Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS06680

Experiment: Filtered_supernatant_MT81_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS06670 and QEN71_RS06675 are separated by 241 nucleotidesQEN71_RS06675 and QEN71_RS06680 are separated by 116 nucleotidesQEN71_RS06680 and QEN71_RS06685 overlap by 20 nucleotidesQEN71_RS06685 and QEN71_RS06690 are separated by 344 nucleotides QEN71_RS06670: QEN71_RS06670 - ACT domain-containing protein, at 1,483,565 to 1,483,963 _RS06670 QEN71_RS06675: QEN71_RS06675 - hypothetical protein, at 1,484,205 to 1,484,741 _RS06675 QEN71_RS06680: QEN71_RS06680 - AlpA family phage regulatory protein, at 1,484,858 to 1,485,091 _RS06680 QEN71_RS06685: QEN71_RS06685 - hypothetical protein, at 1,485,072 to 1,485,368 _RS06685 QEN71_RS06690: QEN71_RS06690 - hypothetical protein, at 1,485,713 to 1,486,312 _RS06690 Position (kb) 1484 1485 1486Strain fitness (log2 ratio) -2 -1 0 1at 1483.862 kb on - strand, within QEN71_RS06670at 1483.862 kb on - strand, within QEN71_RS06670at 1483.880 kb on + strand, within QEN71_RS06670at 1484.018 kb on - strandat 1484.084 kb on - strandat 1484.309 kb on - strand, within QEN71_RS06675at 1484.352 kb on - strand, within QEN71_RS06675at 1484.372 kb on + strand, within QEN71_RS06675at 1484.372 kb on + strand, within QEN71_RS06675at 1484.373 kb on - strand, within QEN71_RS06675at 1484.450 kb on + strand, within QEN71_RS06675at 1484.450 kb on + strand, within QEN71_RS06675at 1484.509 kb on + strand, within QEN71_RS06675at 1484.565 kb on + strand, within QEN71_RS06675at 1484.565 kb on + strand, within QEN71_RS06675at 1484.673 kb on - strand, within QEN71_RS06675at 1484.760 kb on - strandat 1484.872 kb on - strandat 1484.890 kb on - strand, within QEN71_RS06680at 1484.893 kb on - strand, within QEN71_RS06680at 1484.943 kb on - strand, within QEN71_RS06680at 1485.208 kb on + strand, within QEN71_RS06685at 1485.237 kb on + strand, within QEN71_RS06685at 1485.238 kb on - strand, within QEN71_RS06685at 1485.238 kb on - strand, within QEN71_RS06685at 1485.265 kb on + strand, within QEN71_RS06685at 1485.265 kb on + strand, within QEN71_RS06685at 1485.266 kb on - strand, within QEN71_RS06685at 1485.266 kb on - strand, within QEN71_RS06685at 1485.476 kb on + strandat 1485.476 kb on + strandat 1485.506 kb on + strandat 1485.506 kb on + strandat 1485.520 kb on + strandat 1485.590 kb on - strandat 1485.603 kb on + strandat 1485.718 kb on + strandat 1485.718 kb on + strandat 1485.718 kb on + strandat 1485.718 kb on + strandat 1485.718 kb on + strandat 1485.718 kb on + strandat 1485.719 kb on - strandat 1485.900 kb on - strand, within QEN71_RS06690at 1485.900 kb on - strand, within QEN71_RS06690at 1485.900 kb on - strand, within QEN71_RS06690at 1485.930 kb on + strand, within QEN71_RS06690at 1485.931 kb on - strand, within QEN71_RS06690at 1486.013 kb on - strand, within QEN71_RS06690at 1486.031 kb on + strand, within QEN71_RS06690at 1486.052 kb on + strand, within QEN71_RS06690

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB
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1,483,862 - QEN71_RS06670 0.74 -0.3
1,483,862 - QEN71_RS06670 0.74 +0.8
1,483,880 + QEN71_RS06670 0.79 +0.3
1,484,018 - +1.5
1,484,084 - +0.4
1,484,309 - QEN71_RS06675 0.19 +0.1
1,484,352 - QEN71_RS06675 0.27 +1.2
1,484,372 + QEN71_RS06675 0.31 -0.4
1,484,372 + QEN71_RS06675 0.31 -0.4
1,484,373 - QEN71_RS06675 0.31 +0.2
1,484,450 + QEN71_RS06675 0.46 -1.0
1,484,450 + QEN71_RS06675 0.46 -1.0
1,484,509 + QEN71_RS06675 0.57 +0.3
1,484,565 + QEN71_RS06675 0.67 +0.4
1,484,565 + QEN71_RS06675 0.67 +0.8
1,484,673 - QEN71_RS06675 0.87 +1.6
1,484,760 - -2.7
1,484,872 - -1.3
1,484,890 - QEN71_RS06680 0.14 -1.2
1,484,893 - QEN71_RS06680 0.15 -2.7
1,484,943 - QEN71_RS06680 0.36 -0.0
1,485,208 + QEN71_RS06685 0.46 +0.6
1,485,237 + QEN71_RS06685 0.56 -0.1
1,485,238 - QEN71_RS06685 0.56 -2.6
1,485,238 - QEN71_RS06685 0.56 +1.6
1,485,265 + QEN71_RS06685 0.65 +0.2
1,485,265 + QEN71_RS06685 0.65 +0.8
1,485,266 - QEN71_RS06685 0.65 -0.1
1,485,266 - QEN71_RS06685 0.65 -0.8
1,485,476 + +0.3
1,485,476 + +1.1
1,485,506 + +0.7
1,485,506 + -0.4
1,485,520 + +1.6
1,485,590 - -1.5
1,485,603 + +0.2
1,485,718 + +0.4
1,485,718 + -0.6
1,485,718 + -0.1
1,485,718 + -0.2
1,485,718 + +0.5
1,485,718 + +0.0
1,485,719 - -0.2
1,485,900 - QEN71_RS06690 0.31 +0.4
1,485,900 - QEN71_RS06690 0.31 +0.3
1,485,900 - QEN71_RS06690 0.31 -0.0
1,485,930 + QEN71_RS06690 0.36 +1.4
1,485,931 - QEN71_RS06690 0.36 +0.5
1,486,013 - QEN71_RS06690 0.50 +0.5
1,486,031 + QEN71_RS06690 0.53 -0.5
1,486,052 + QEN71_RS06690 0.56 +0.6

Or see this region's nucleotide sequence