Experiment: Filtered_supernatant_MT81_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS03655 and QEN71_RS03660 are separated by 62 nucleotides QEN71_RS03660 and QEN71_RS03665 are separated by 79 nucleotides QEN71_RS03665 and QEN71_RS03670 are separated by 67 nucleotides QEN71_RS03670 and QEN71_RS03675 are separated by 86 nucleotides QEN71_RS03675 and QEN71_RS03680 are separated by 105 nucleotides
QEN71_RS03655: QEN71_RS03655 - guanylate kinase, at 814,509 to 815,183
_RS03655
QEN71_RS03660: QEN71_RS03660 - DNA-directed RNA polymerase subunit omega, at 815,246 to 815,449
_RS03660
QEN71_RS03665: QEN71_RS03665 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 815,529 to 817,913
_RS03665
QEN71_RS03670: QEN71_RS03670 - DUF2591 family protein, at 817,981 to 818,469
_RS03670
QEN71_RS03675: QEN71_RS03675 - tRNA-Arg, at 818,556 to 818,632
_RS03675
QEN71_RS03680: QEN71_RS03680 - tRNA-Arg, at 818,738 to 818,814
_RS03680
Position (kb) 815
816
817
818 Strain fitness (log2 ratio) -2
-1
0
1
2 at 815.185 kb on - strand at 815.206 kb on + strand at 815.206 kb on + strand at 815.206 kb on + strand at 815.206 kb on + strand at 815.206 kb on + strand at 815.206 kb on + strand at 815.206 kb on + strand at 815.206 kb on + strand at 815.206 kb on + strand at 815.206 kb on + strand at 815.206 kb on + strand at 815.206 kb on + strand at 815.206 kb on + strand at 815.206 kb on + strand at 815.207 kb on - strand at 815.207 kb on - strand at 815.207 kb on - strand at 815.207 kb on - strand at 815.207 kb on - strand at 815.211 kb on + strand at 815.211 kb on + strand at 815.211 kb on + strand at 815.211 kb on + strand at 815.211 kb on + strand at 815.211 kb on + strand at 815.212 kb on - strand at 815.216 kb on + strand at 815.225 kb on + strand at 815.225 kb on + strand at 815.225 kb on + strand at 815.447 kb on + strand at 815.458 kb on + strand at 815.458 kb on + strand at 815.458 kb on + strand at 815.458 kb on + strand at 815.458 kb on + strand at 815.458 kb on + strand at 815.458 kb on + strand at 815.458 kb on + strand at 815.458 kb on + strand at 815.458 kb on + strand at 815.458 kb on + strand at 815.458 kb on + strand at 815.481 kb on + strand at 815.481 kb on + strand at 815.481 kb on + strand at 815.481 kb on + strand at 815.481 kb on + strand at 815.481 kb on + strand at 815.481 kb on + strand at 815.481 kb on + strand at 815.481 kb on + strand at 815.481 kb on + strand at 815.481 kb on + strand at 815.481 kb on + strand at 815.481 kb on + strand at 815.481 kb on + strand at 815.481 kb on + strand at 816.861 kb on + strand, within QEN71_RS03665 at 816.861 kb on + strand, within QEN71_RS03665 at 816.861 kb on + strand, within QEN71_RS03665 at 816.861 kb on + strand, within QEN71_RS03665 at 816.862 kb on - strand, within QEN71_RS03665 at 817.185 kb on + strand, within QEN71_RS03665 at 817.319 kb on + strand, within QEN71_RS03665 at 817.488 kb on + strand, within QEN71_RS03665 at 817.488 kb on + strand, within QEN71_RS03665 at 817.489 kb on - strand, within QEN71_RS03665 at 817.757 kb on + strand at 817.822 kb on + strand at 817.822 kb on + strand at 817.822 kb on + strand at 817.966 kb on + strand at 817.966 kb on + strand at 817.966 kb on + strand at 817.966 kb on + strand at 817.967 kb on - strand at 817.988 kb on + strand at 817.988 kb on + strand at 817.988 kb on + strand at 817.988 kb on + strand at 817.988 kb on + strand at 817.988 kb on + strand at 817.988 kb on + strand at 817.988 kb on + strand at 817.988 kb on + strand at 817.988 kb on + strand at 817.988 kb on + strand at 817.988 kb on + strand at 817.988 kb on + strand at 817.989 kb on - strand at 817.989 kb on - strand at 817.989 kb on - strand at 817.989 kb on - strand at 817.989 kb on - strand at 817.989 kb on - strand at 817.989 kb on - strand at 817.989 kb on - strand at 817.989 kb on - strand at 817.989 kb on - strand at 817.989 kb on - strand at 818.017 kb on + strand at 818.017 kb on + strand at 818.064 kb on + strand, within QEN71_RS03670 at 818.065 kb on - strand, within QEN71_RS03670 at 818.279 kb on + strand, within QEN71_RS03670 at 818.280 kb on - strand, within QEN71_RS03670 at 818.280 kb on - strand, within QEN71_RS03670 at 818.280 kb on - strand, within QEN71_RS03670 at 818.280 kb on - strand, within QEN71_RS03670 at 818.420 kb on + strand, within QEN71_RS03670 at 818.449 kb on - strand at 818.607 kb on - strand, within QEN71_RS03675 at 818.607 kb on - strand, within QEN71_RS03675 at 818.607 kb on - strand, within QEN71_RS03675 at 818.607 kb on - strand, within QEN71_RS03675 at 818.607 kb on - strand, within QEN71_RS03675 at 818.607 kb on - strand, within QEN71_RS03675 at 818.607 kb on - strand, within QEN71_RS03675 at 818.607 kb on - strand, within QEN71_RS03675 at 818.607 kb on - strand, within QEN71_RS03675 at 818.607 kb on - strand, within QEN71_RS03675 at 818.607 kb on - strand, within QEN71_RS03675 at 818.625 kb on - strand at 818.625 kb on - strand at 818.638 kb on - strand at 818.678 kb on - strand at 818.678 kb on - strand at 818.678 kb on - strand at 818.887 kb on + strand at 818.888 kb on - strand at 818.894 kb on + strand at 818.894 kb on + strand at 818.894 kb on + strand at 818.894 kb on + strand at 818.894 kb on + strand at 818.894 kb on + strand at 818.894 kb on + strand at 818.894 kb on + strand at 818.894 kb on + strand at 818.894 kb on + strand at 818.895 kb on - strand at 818.895 kb on - strand at 818.895 kb on - strand at 818.895 kb on - strand at 818.895 kb on - strand at 818.895 kb on - strand at 818.895 kb on - strand at 818.895 kb on - strand at 818.895 kb on - strand at 818.895 kb on - strand at 818.895 kb on - strand at 818.895 kb on - strand at 818.899 kb on + strand at 818.899 kb on + strand at 818.899 kb on + strand at 818.899 kb on + strand at 818.899 kb on + strand at 818.899 kb on + strand at 818.899 kb on + strand at 818.899 kb on + strand at 818.899 kb on + strand at 818.900 kb on - strand at 818.900 kb on - strand at 818.900 kb on - strand at 818.900 kb on - strand at 818.900 kb on - strand at 818.900 kb on - strand at 818.900 kb on - strand at 818.900 kb on - strand at 818.900 kb on - strand at 818.903 kb on + strand at 818.903 kb on + strand at 818.903 kb on + strand at 818.903 kb on + strand at 818.903 kb on + strand at 818.904 kb on - strand at 818.904 kb on - strand at 818.904 kb on - strand at 818.904 kb on - strand at 818.904 kb on - strand at 818.904 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB remove 815,185 - -0.6 815,206 + -0.6 815,206 + +0.1 815,206 + +0.5 815,206 + -0.6 815,206 + +0.7 815,206 + -0.6 815,206 + +0.1 815,206 + -0.4 815,206 + -0.0 815,206 + -0.0 815,206 + -0.0 815,206 + -0.5 815,206 + +0.0 815,206 + +0.5 815,207 - -0.0 815,207 - +0.6 815,207 - -0.6 815,207 - -0.0 815,207 - -1.6 815,211 + -0.9 815,211 + +1.0 815,211 + +0.9 815,211 + -0.0 815,211 + -0.9 815,211 + +0.6 815,212 - -0.6 815,216 + -0.0 815,225 + -2.7 815,225 + -0.2 815,225 + -0.0 815,447 + +0.6 815,458 + +0.7 815,458 + +1.0 815,458 + +1.4 815,458 + -1.6 815,458 + -0.3 815,458 + +1.2 815,458 + +0.8 815,458 + -0.3 815,458 + +0.1 815,458 + +0.6 815,458 + +0.5 815,458 + -0.3 815,481 + -1.2 815,481 + -0.2 815,481 + +1.4 815,481 + -0.2 815,481 + -0.0 815,481 + +1.1 815,481 + +1.0 815,481 + -2.1 815,481 + +0.2 815,481 + +0.8 815,481 + +1.0 815,481 + +0.2 815,481 + +0.9 815,481 + +2.0 815,481 + -0.4 816,861 + QEN71_RS03665 0.56 -1.0 816,861 + QEN71_RS03665 0.56 -0.4 816,861 + QEN71_RS03665 0.56 +0.7 816,861 + QEN71_RS03665 0.56 -0.8 816,862 - QEN71_RS03665 0.56 +0.6 817,185 + QEN71_RS03665 0.69 +0.2 817,319 + QEN71_RS03665 0.75 -0.4 817,488 + QEN71_RS03665 0.82 -1.2 817,488 + QEN71_RS03665 0.82 -0.6 817,489 - QEN71_RS03665 0.82 -0.0 817,757 + -0.0 817,822 + -0.8 817,822 + -0.5 817,822 + -0.6 817,966 + +0.0 817,966 + -0.2 817,966 + +0.5 817,966 + +0.3 817,967 - -0.2 817,988 + -0.2 817,988 + +0.3 817,988 + +1.0 817,988 + +0.3 817,988 + +0.2 817,988 + +0.6 817,988 + -0.9 817,988 + +0.1 817,988 + -0.5 817,988 + -1.2 817,988 + +1.2 817,988 + -0.9 817,988 + -1.9 817,989 - -0.4 817,989 - +0.6 817,989 - -1.4 817,989 - -0.0 817,989 - -0.0 817,989 - +0.1 817,989 - -1.2 817,989 - +0.4 817,989 - +0.6 817,989 - -1.2 817,989 - +0.1 818,017 + -1.2 818,017 + -0.2 818,064 + QEN71_RS03670 0.17 -1.8 818,065 - QEN71_RS03670 0.17 -0.0 818,279 + QEN71_RS03670 0.61 +0.0 818,280 - QEN71_RS03670 0.61 +1.7 818,280 - QEN71_RS03670 0.61 +0.4 818,280 - QEN71_RS03670 0.61 -0.6 818,280 - QEN71_RS03670 0.61 -0.7 818,420 + QEN71_RS03670 0.90 +0.3 818,449 - +1.0 818,607 - QEN71_RS03675 0.66 -0.2 818,607 - QEN71_RS03675 0.66 -0.4 818,607 - QEN71_RS03675 0.66 -0.8 818,607 - QEN71_RS03675 0.66 -0.2 818,607 - QEN71_RS03675 0.66 +2.3 818,607 - QEN71_RS03675 0.66 +1.2 818,607 - QEN71_RS03675 0.66 +1.2 818,607 - QEN71_RS03675 0.66 -0.7 818,607 - QEN71_RS03675 0.66 -0.4 818,607 - QEN71_RS03675 0.66 +0.4 818,607 - QEN71_RS03675 0.66 +1.0 818,625 - -0.4 818,625 - +1.5 818,638 - -0.8 818,678 - +0.5 818,678 - -0.8 818,678 - -0.2 818,887 + -0.9 818,888 - +0.2 818,894 + -0.5 818,894 + -0.4 818,894 + -0.0 818,894 + +0.0 818,894 + -1.0 818,894 + -1.0 818,894 + -1.0 818,894 + +1.0 818,894 + +0.1 818,894 + -0.6 818,895 - +2.2 818,895 - -0.2 818,895 - -0.6 818,895 - +0.3 818,895 - +0.2 818,895 - -0.1 818,895 - -0.2 818,895 - -0.2 818,895 - -0.3 818,895 - -1.4 818,895 - -0.6 818,895 - +1.0 818,899 + -1.2 818,899 + +0.1 818,899 + +0.3 818,899 + -1.0 818,899 + -0.6 818,899 + +0.1 818,899 + +1.3 818,899 + -0.7 818,899 + -0.6 818,900 - +0.0 818,900 - -0.0 818,900 - +0.6 818,900 - +0.4 818,900 - -0.8 818,900 - -1.0 818,900 - -0.2 818,900 - +0.8 818,900 - +0.7 818,903 + -0.8 818,903 + -0.8 818,903 + -0.4 818,903 + -0.0 818,903 + -1.0 818,904 - -0.4 818,904 - +0.5 818,904 - -0.4 818,904 - -0.4 818,904 - +0.5 818,904 - +0.1
Or see this region's nucleotide sequence