Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS03645

Experiment: Filtered_supernatant_MT81_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS03635 and QEN71_RS03640 overlap by 4 nucleotidesQEN71_RS03640 and QEN71_RS03645 overlap by 8 nucleotidesQEN71_RS03645 and QEN71_RS03650 are separated by 297 nucleotides QEN71_RS03635: QEN71_RS03635 - radical SAM family heme chaperone HemW, at 810,690 to 811,904 _RS03635 QEN71_RS03640: QEN71_RS03640 - RdgB/HAM1 family non-canonical purine NTP pyrophosphatase, at 811,901 to 812,536 _RS03640 QEN71_RS03645: QEN71_RS03645 - ribonuclease PH, at 812,529 to 813,269 _RS03645 QEN71_RS03650: QEN71_RS03650 - YicC/YloC family endoribonuclease, at 813,567 to 814,490 _RS03650 Position (kb) 812 813 814Strain fitness (log2 ratio) -2 -1 0 1 2at 811.655 kb on + strand, within QEN71_RS03635at 811.655 kb on + strand, within QEN71_RS03635at 811.656 kb on - strand, within QEN71_RS03635at 811.656 kb on - strand, within QEN71_RS03635at 811.720 kb on + strand, within QEN71_RS03635at 811.721 kb on - strand, within QEN71_RS03635at 811.721 kb on - strand, within QEN71_RS03635at 811.721 kb on - strand, within QEN71_RS03635at 811.752 kb on + strand, within QEN71_RS03635at 811.752 kb on + strand, within QEN71_RS03635at 811.810 kb on + strandat 811.810 kb on + strandat 811.810 kb on + strandat 811.810 kb on + strandat 811.810 kb on + strandat 811.810 kb on + strandat 811.810 kb on + strandat 811.810 kb on + strandat 811.810 kb on + strandat 811.811 kb on - strandat 811.811 kb on - strandat 811.811 kb on - strandat 811.811 kb on - strandat 812.022 kb on + strand, within QEN71_RS03640at 812.022 kb on + strand, within QEN71_RS03640at 812.022 kb on + strand, within QEN71_RS03640at 812.022 kb on + strand, within QEN71_RS03640at 812.023 kb on - strand, within QEN71_RS03640at 812.023 kb on - strand, within QEN71_RS03640at 812.023 kb on - strand, within QEN71_RS03640at 812.023 kb on - strand, within QEN71_RS03640at 812.023 kb on - strand, within QEN71_RS03640at 812.146 kb on - strand, within QEN71_RS03640at 812.146 kb on - strand, within QEN71_RS03640at 812.146 kb on - strand, within QEN71_RS03640at 812.146 kb on - strand, within QEN71_RS03640at 812.146 kb on - strand, within QEN71_RS03640at 812.149 kb on - strand, within QEN71_RS03640at 812.149 kb on - strand, within QEN71_RS03640at 812.250 kb on + strand, within QEN71_RS03640at 812.725 kb on + strand, within QEN71_RS03645at 812.755 kb on + strand, within QEN71_RS03645at 812.767 kb on + strand, within QEN71_RS03645at 812.782 kb on + strand, within QEN71_RS03645at 812.783 kb on - strand, within QEN71_RS03645at 812.783 kb on - strand, within QEN71_RS03645at 813.041 kb on + strand, within QEN71_RS03645at 813.042 kb on - strand, within QEN71_RS03645at 813.067 kb on + strand, within QEN71_RS03645at 813.196 kb on + strandat 813.278 kb on + strandat 813.279 kb on - strandat 813.279 kb on - strandat 813.425 kb on + strandat 813.426 kb on - strandat 813.432 kb on - strandat 813.469 kb on + strandat 813.497 kb on + strandat 813.563 kb on + strandat 813.563 kb on + strandat 813.563 kb on + strandat 813.563 kb on + strandat 813.563 kb on + strandat 813.563 kb on + strandat 813.563 kb on + strandat 813.563 kb on + strandat 813.563 kb on + strandat 813.563 kb on + strandat 813.563 kb on + strandat 813.563 kb on + strandat 813.564 kb on - strandat 813.564 kb on - strandat 813.564 kb on - strandat 813.564 kb on - strandat 813.564 kb on - strandat 813.564 kb on - strandat 813.564 kb on - strandat 813.564 kb on - strandat 813.564 kb on - strandat 813.564 kb on - strandat 813.573 kb on + strandat 813.573 kb on + strandat 813.573 kb on + strandat 813.573 kb on + strandat 813.573 kb on + strandat 813.573 kb on + strandat 813.578 kb on + strandat 813.578 kb on + strandat 813.578 kb on + strandat 813.578 kb on + strandat 813.578 kb on + strandat 813.578 kb on + strandat 813.578 kb on + strandat 813.578 kb on + strandat 813.588 kb on + strandat 813.588 kb on + strandat 814.248 kb on + strand, within QEN71_RS03650at 814.248 kb on + strand, within QEN71_RS03650at 814.248 kb on + strand, within QEN71_RS03650at 814.248 kb on + strand, within QEN71_RS03650at 814.248 kb on + strand, within QEN71_RS03650at 814.248 kb on + strand, within QEN71_RS03650at 814.248 kb on + strand, within QEN71_RS03650

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB
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811,655 + QEN71_RS03635 0.79 -1.0
811,655 + QEN71_RS03635 0.79 -0.2
811,656 - QEN71_RS03635 0.80 -0.8
811,656 - QEN71_RS03635 0.80 -1.6
811,720 + QEN71_RS03635 0.85 -0.0
811,721 - QEN71_RS03635 0.85 -1.3
811,721 - QEN71_RS03635 0.85 -1.9
811,721 - QEN71_RS03635 0.85 +0.4
811,752 + QEN71_RS03635 0.87 +0.1
811,752 + QEN71_RS03635 0.87 +0.2
811,810 + +0.2
811,810 + +0.2
811,810 + -0.2
811,810 + -0.1
811,810 + +1.0
811,810 + -1.0
811,810 + -0.6
811,810 + +1.4
811,810 + -0.4
811,811 - -0.6
811,811 - -0.4
811,811 - +1.0
811,811 - +2.0
812,022 + QEN71_RS03640 0.19 -0.1
812,022 + QEN71_RS03640 0.19 +0.3
812,022 + QEN71_RS03640 0.19 +0.9
812,022 + QEN71_RS03640 0.19 -0.0
812,023 - QEN71_RS03640 0.19 +0.5
812,023 - QEN71_RS03640 0.19 +0.7
812,023 - QEN71_RS03640 0.19 +0.0
812,023 - QEN71_RS03640 0.19 -0.0
812,023 - QEN71_RS03640 0.19 +0.3
812,146 - QEN71_RS03640 0.39 -0.3
812,146 - QEN71_RS03640 0.39 -0.9
812,146 - QEN71_RS03640 0.39 -0.1
812,146 - QEN71_RS03640 0.39 -0.5
812,146 - QEN71_RS03640 0.39 +0.1
812,149 - QEN71_RS03640 0.39 +0.5
812,149 - QEN71_RS03640 0.39 +1.3
812,250 + QEN71_RS03640 0.55 -0.0
812,725 + QEN71_RS03645 0.26 +1.5
812,755 + QEN71_RS03645 0.30 -0.0
812,767 + QEN71_RS03645 0.32 +0.2
812,782 + QEN71_RS03645 0.34 -0.5
812,783 - QEN71_RS03645 0.34 -1.7
812,783 - QEN71_RS03645 0.34 -1.1
813,041 + QEN71_RS03645 0.69 -0.0
813,042 - QEN71_RS03645 0.69 -1.4
813,067 + QEN71_RS03645 0.73 -1.2
813,196 + -0.0
813,278 + +1.0
813,279 - +0.0
813,279 - -0.4
813,425 + -1.0
813,426 - -0.3
813,432 - -0.1
813,469 + -0.5
813,497 + +0.1
813,563 + +0.3
813,563 + -0.0
813,563 + -0.7
813,563 + -1.2
813,563 + -0.8
813,563 + +0.3
813,563 + +0.4
813,563 + +0.4
813,563 + +1.0
813,563 + +0.3
813,563 + +0.1
813,563 + -0.6
813,564 - +1.6
813,564 - +1.1
813,564 - +0.2
813,564 - +0.2
813,564 - -0.2
813,564 - +1.0
813,564 - -0.6
813,564 - -1.7
813,564 - -0.2
813,564 - -0.1
813,573 + -1.3
813,573 + +0.8
813,573 + -0.0
813,573 + +0.4
813,573 + +0.3
813,573 + -1.9
813,578 + +0.7
813,578 + -0.6
813,578 + +0.5
813,578 + -1.9
813,578 + +0.5
813,578 + -0.8
813,578 + -1.0
813,578 + +0.7
813,588 + -0.5
813,588 + -0.6
814,248 + QEN71_RS03650 0.74 +0.7
814,248 + QEN71_RS03650 0.74 +1.5
814,248 + QEN71_RS03650 0.74 -1.5
814,248 + QEN71_RS03650 0.74 -1.0
814,248 + QEN71_RS03650 0.74 +0.3
814,248 + QEN71_RS03650 0.74 -1.2
814,248 + QEN71_RS03650 0.74 -0.2

Or see this region's nucleotide sequence