Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS01060

Experiment: Filtered_supernatant_MT81_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS01045 and QEN71_RS01050 overlap by 4 nucleotidesQEN71_RS01050 and QEN71_RS01055 overlap by 4 nucleotidesQEN71_RS01055 and QEN71_RS01060 are separated by 21 nucleotidesQEN71_RS01060 and QEN71_RS01065 are separated by 72 nucleotides QEN71_RS01045: QEN71_RS01045 - MaoC family dehydratase, at 240,590 to 241,045 _RS01045 QEN71_RS01050: QEN71_RS01050 - DUF1289 domain-containing protein, at 241,042 to 241,290 _RS01050 QEN71_RS01055: QEN71_RS01055 - YbaK/EbsC family protein, at 241,287 to 241,820 _RS01055 QEN71_RS01060: QEN71_RS01060 - hydroxymethylglutaryl-CoA lyase, at 241,842 to 242,768 _RS01060 QEN71_RS01065: QEN71_RS01065 - glyoxylate/hydroxypyruvate reductase A, at 242,841 to 243,782 _RS01065 Position (kb) 241 242 243Strain fitness (log2 ratio) -2 -1 0 1at 240.915 kb on + strand, within QEN71_RS01045at 240.915 kb on + strand, within QEN71_RS01045at 241.302 kb on + strandat 241.464 kb on + strand, within QEN71_RS01055at 241.464 kb on + strand, within QEN71_RS01055at 241.464 kb on + strand, within QEN71_RS01055at 241.464 kb on + strand, within QEN71_RS01055at 241.464 kb on + strand, within QEN71_RS01055at 241.465 kb on - strand, within QEN71_RS01055at 241.465 kb on - strand, within QEN71_RS01055at 241.784 kb on + strandat 241.784 kb on + strandat 241.784 kb on + strandat 241.784 kb on + strandat 241.785 kb on - strandat 241.785 kb on - strandat 241.785 kb on - strandat 241.785 kb on - strandat 241.785 kb on - strandat 241.785 kb on - strandat 241.999 kb on + strand, within QEN71_RS01060at 241.999 kb on + strand, within QEN71_RS01060at 241.999 kb on + strand, within QEN71_RS01060at 241.999 kb on + strand, within QEN71_RS01060at 241.999 kb on + strand, within QEN71_RS01060at 241.999 kb on + strand, within QEN71_RS01060at 242.000 kb on - strand, within QEN71_RS01060at 242.000 kb on - strand, within QEN71_RS01060at 242.000 kb on - strand, within QEN71_RS01060at 242.000 kb on - strand, within QEN71_RS01060at 242.000 kb on - strand, within QEN71_RS01060at 242.000 kb on - strand, within QEN71_RS01060at 242.000 kb on - strand, within QEN71_RS01060at 242.000 kb on - strand, within QEN71_RS01060at 242.110 kb on + strand, within QEN71_RS01060at 242.110 kb on + strand, within QEN71_RS01060at 242.110 kb on + strand, within QEN71_RS01060at 242.110 kb on + strand, within QEN71_RS01060at 242.110 kb on + strand, within QEN71_RS01060at 242.111 kb on - strand, within QEN71_RS01060at 242.111 kb on - strand, within QEN71_RS01060at 242.138 kb on + strand, within QEN71_RS01060at 242.138 kb on + strand, within QEN71_RS01060at 242.139 kb on - strand, within QEN71_RS01060at 242.139 kb on - strand, within QEN71_RS01060at 242.175 kb on + strand, within QEN71_RS01060at 242.176 kb on - strand, within QEN71_RS01060at 242.292 kb on + strand, within QEN71_RS01060at 242.321 kb on - strand, within QEN71_RS01060at 242.539 kb on + strand, within QEN71_RS01060at 242.539 kb on + strand, within QEN71_RS01060at 242.539 kb on + strand, within QEN71_RS01060at 242.539 kb on + strand, within QEN71_RS01060at 242.539 kb on + strand, within QEN71_RS01060at 242.540 kb on - strand, within QEN71_RS01060at 242.540 kb on - strand, within QEN71_RS01060at 242.823 kb on + strandat 242.823 kb on + strandat 242.823 kb on + strandat 242.823 kb on + strandat 242.824 kb on - strandat 242.824 kb on - strandat 242.824 kb on - strandat 242.824 kb on - strandat 242.824 kb on - strandat 242.824 kb on - strandat 242.954 kb on + strand, within QEN71_RS01065at 242.954 kb on + strand, within QEN71_RS01065at 242.955 kb on - strand, within QEN71_RS01065at 242.955 kb on - strand, within QEN71_RS01065at 242.955 kb on - strand, within QEN71_RS01065at 243.024 kb on + strand, within QEN71_RS01065at 243.024 kb on + strand, within QEN71_RS01065at 243.025 kb on - strand, within QEN71_RS01065at 243.025 kb on - strand, within QEN71_RS01065at 243.025 kb on - strand, within QEN71_RS01065at 243.036 kb on - strand, within QEN71_RS01065at 243.118 kb on + strand, within QEN71_RS01065at 243.119 kb on - strand, within QEN71_RS01065at 243.179 kb on + strand, within QEN71_RS01065at 243.179 kb on + strand, within QEN71_RS01065at 243.179 kb on + strand, within QEN71_RS01065at 243.179 kb on + strand, within QEN71_RS01065at 243.179 kb on + strand, within QEN71_RS01065at 243.179 kb on + strand, within QEN71_RS01065at 243.180 kb on - strand, within QEN71_RS01065at 243.180 kb on - strand, within QEN71_RS01065at 243.180 kb on - strand, within QEN71_RS01065at 243.251 kb on + strand, within QEN71_RS01065at 243.251 kb on + strand, within QEN71_RS01065at 243.252 kb on - strand, within QEN71_RS01065at 243.252 kb on - strand, within QEN71_RS01065at 243.430 kb on + strand, within QEN71_RS01065at 243.431 kb on - strand, within QEN71_RS01065at 243.451 kb on + strand, within QEN71_RS01065at 243.451 kb on + strand, within QEN71_RS01065at 243.451 kb on + strand, within QEN71_RS01065at 243.451 kb on + strand, within QEN71_RS01065at 243.451 kb on + strand, within QEN71_RS01065at 243.452 kb on - strand, within QEN71_RS01065at 243.476 kb on - strand, within QEN71_RS01065at 243.476 kb on - strand, within QEN71_RS01065at 243.503 kb on + strand, within QEN71_RS01065at 243.504 kb on - strand, within QEN71_RS01065at 243.504 kb on - strand, within QEN71_RS01065at 243.694 kb on - strandat 243.699 kb on + strandat 243.699 kb on + strandat 243.699 kb on + strandat 243.700 kb on - strandat 243.700 kb on - strandat 243.700 kb on - strandat 243.766 kb on + strandat 243.766 kb on + strandat 243.766 kb on + strandat 243.766 kb on + strandat 243.767 kb on - strandat 243.767 kb on - strandat 243.767 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB
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240,915 + QEN71_RS01045 0.71 +0.6
240,915 + QEN71_RS01045 0.71 -0.0
241,302 + -0.1
241,464 + QEN71_RS01055 0.33 +0.4
241,464 + QEN71_RS01055 0.33 -0.8
241,464 + QEN71_RS01055 0.33 -0.4
241,464 + QEN71_RS01055 0.33 -2.3
241,464 + QEN71_RS01055 0.33 -0.4
241,465 - QEN71_RS01055 0.33 -1.0
241,465 - QEN71_RS01055 0.33 +0.6
241,784 + -0.1
241,784 + +0.6
241,784 + +1.2
241,784 + -0.3
241,785 - -0.5
241,785 - -0.1
241,785 - +0.7
241,785 - -0.3
241,785 - -0.3
241,785 - -1.1
241,999 + QEN71_RS01060 0.17 -2.1
241,999 + QEN71_RS01060 0.17 -1.2
241,999 + QEN71_RS01060 0.17 -1.4
241,999 + QEN71_RS01060 0.17 -0.6
241,999 + QEN71_RS01060 0.17 -1.4
241,999 + QEN71_RS01060 0.17 -1.3
242,000 - QEN71_RS01060 0.17 -0.9
242,000 - QEN71_RS01060 0.17 -0.1
242,000 - QEN71_RS01060 0.17 -0.7
242,000 - QEN71_RS01060 0.17 -0.2
242,000 - QEN71_RS01060 0.17 -1.0
242,000 - QEN71_RS01060 0.17 -1.1
242,000 - QEN71_RS01060 0.17 -1.6
242,000 - QEN71_RS01060 0.17 -0.9
242,110 + QEN71_RS01060 0.29 -0.4
242,110 + QEN71_RS01060 0.29 -1.5
242,110 + QEN71_RS01060 0.29 -1.4
242,110 + QEN71_RS01060 0.29 -1.0
242,110 + QEN71_RS01060 0.29 -1.9
242,111 - QEN71_RS01060 0.29 -1.3
242,111 - QEN71_RS01060 0.29 -0.4
242,138 + QEN71_RS01060 0.32 -1.2
242,138 + QEN71_RS01060 0.32 -1.6
242,139 - QEN71_RS01060 0.32 -1.6
242,139 - QEN71_RS01060 0.32 -1.0
242,175 + QEN71_RS01060 0.36 -1.0
242,176 - QEN71_RS01060 0.36 -1.9
242,292 + QEN71_RS01060 0.49 -0.8
242,321 - QEN71_RS01060 0.52 -1.0
242,539 + QEN71_RS01060 0.75 -1.5
242,539 + QEN71_RS01060 0.75 -1.8
242,539 + QEN71_RS01060 0.75 -1.1
242,539 + QEN71_RS01060 0.75 -1.7
242,539 + QEN71_RS01060 0.75 -1.0
242,540 - QEN71_RS01060 0.75 -0.6
242,540 - QEN71_RS01060 0.75 -1.1
242,823 + -1.7
242,823 + -0.8
242,823 + -0.9
242,823 + -0.8
242,824 - -0.6
242,824 - -0.7
242,824 - -0.7
242,824 - +0.9
242,824 - -0.0
242,824 - -0.6
242,954 + QEN71_RS01065 0.12 -0.3
242,954 + QEN71_RS01065 0.12 -0.8
242,955 - QEN71_RS01065 0.12 +0.1
242,955 - QEN71_RS01065 0.12 +1.2
242,955 - QEN71_RS01065 0.12 +1.0
243,024 + QEN71_RS01065 0.19 -1.3
243,024 + QEN71_RS01065 0.19 -1.5
243,025 - QEN71_RS01065 0.20 +1.2
243,025 - QEN71_RS01065 0.20 +0.1
243,025 - QEN71_RS01065 0.20 -0.8
243,036 - QEN71_RS01065 0.21 +0.3
243,118 + QEN71_RS01065 0.29 +0.1
243,119 - QEN71_RS01065 0.30 -0.8
243,179 + QEN71_RS01065 0.36 -0.3
243,179 + QEN71_RS01065 0.36 +0.2
243,179 + QEN71_RS01065 0.36 -0.3
243,179 + QEN71_RS01065 0.36 -0.6
243,179 + QEN71_RS01065 0.36 +0.6
243,179 + QEN71_RS01065 0.36 -0.2
243,180 - QEN71_RS01065 0.36 +1.0
243,180 - QEN71_RS01065 0.36 -1.2
243,180 - QEN71_RS01065 0.36 +0.2
243,251 + QEN71_RS01065 0.44 -1.3
243,251 + QEN71_RS01065 0.44 -1.1
243,252 - QEN71_RS01065 0.44 -0.4
243,252 - QEN71_RS01065 0.44 -0.5
243,430 + QEN71_RS01065 0.63 -1.1
243,431 - QEN71_RS01065 0.63 +0.5
243,451 + QEN71_RS01065 0.65 -0.5
243,451 + QEN71_RS01065 0.65 +0.4
243,451 + QEN71_RS01065 0.65 -0.7
243,451 + QEN71_RS01065 0.65 -1.5
243,451 + QEN71_RS01065 0.65 -1.2
243,452 - QEN71_RS01065 0.65 -2.2
243,476 - QEN71_RS01065 0.67 -1.6
243,476 - QEN71_RS01065 0.67 -0.6
243,503 + QEN71_RS01065 0.70 -0.5
243,504 - QEN71_RS01065 0.70 +0.2
243,504 - QEN71_RS01065 0.70 +0.7
243,694 - -0.6
243,699 + -0.9
243,699 + +0.9
243,699 + +1.3
243,700 - -0.7
243,700 - -0.6
243,700 - -0.0
243,766 + -0.6
243,766 + -0.6
243,766 + -0.5
243,766 + -0.4
243,767 - -0.4
243,767 - +0.2
243,767 - +1.0

Or see this region's nucleotide sequence