Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04138

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_04137 and MIT1002_04138 are separated by 57 nucleotidesMIT1002_04138 and MIT1002_04139 are separated by 3 nucleotidesMIT1002_04139 and MIT1002_04140 are separated by 286 nucleotides MIT1002_04137: MIT1002_04137 - hypothetical protein, at 3,258 to 3,992 _04137 MIT1002_04138: MIT1002_04138 - hypothetical protein, at 4,050 to 4,268 _04138 MIT1002_04139: MIT1002_04139 - hypothetical protein, at 4,272 to 4,784 _04139 MIT1002_04140: MIT1002_04140 - hypothetical protein, at 5,071 to 6,039 _04140 Position (kb) 4 5Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3.059 kb on + strandat 3.064 kb on + strandat 3.064 kb on + strandat 3.122 kb on - strandat 3.125 kb on - strandat 3.142 kb on + strandat 3.186 kb on + strandat 3.187 kb on - strandat 3.196 kb on - strandat 3.202 kb on - strandat 3.217 kb on + strandat 3.217 kb on + strandat 3.225 kb on - strandat 3.225 kb on - strandat 3.225 kb on - strandat 3.225 kb on - strandat 3.230 kb on - strandat 3.257 kb on - strandat 3.325 kb on - strandat 3.333 kb on - strand, within MIT1002_04137at 3.340 kb on - strand, within MIT1002_04137at 3.401 kb on + strand, within MIT1002_04137at 3.437 kb on + strand, within MIT1002_04137at 3.437 kb on + strand, within MIT1002_04137at 3.437 kb on - strand, within MIT1002_04137at 3.445 kb on - strand, within MIT1002_04137at 3.445 kb on - strand, within MIT1002_04137at 3.445 kb on - strand, within MIT1002_04137at 3.452 kb on + strand, within MIT1002_04137at 3.455 kb on - strand, within MIT1002_04137at 3.522 kb on + strand, within MIT1002_04137at 3.522 kb on + strand, within MIT1002_04137at 3.530 kb on - strand, within MIT1002_04137at 3.557 kb on + strand, within MIT1002_04137at 3.583 kb on - strand, within MIT1002_04137at 3.583 kb on - strand, within MIT1002_04137at 3.634 kb on + strand, within MIT1002_04137at 3.634 kb on + strand, within MIT1002_04137at 3.634 kb on + strand, within MIT1002_04137at 3.634 kb on + strand, within MIT1002_04137at 3.634 kb on + strand, within MIT1002_04137at 3.642 kb on - strand, within MIT1002_04137at 3.642 kb on - strand, within MIT1002_04137at 3.661 kb on - strand, within MIT1002_04137at 3.663 kb on - strand, within MIT1002_04137at 3.702 kb on + strand, within MIT1002_04137at 3.710 kb on + strand, within MIT1002_04137at 3.757 kb on - strand, within MIT1002_04137at 3.801 kb on + strand, within MIT1002_04137at 3.801 kb on + strand, within MIT1002_04137at 3.801 kb on + strand, within MIT1002_04137at 3.801 kb on + strand, within MIT1002_04137at 3.809 kb on + strand, within MIT1002_04137at 3.809 kb on + strand, within MIT1002_04137at 3.809 kb on - strand, within MIT1002_04137at 3.817 kb on + strand, within MIT1002_04137at 3.817 kb on - strand, within MIT1002_04137at 3.817 kb on - strand, within MIT1002_04137at 3.817 kb on - strand, within MIT1002_04137at 3.852 kb on + strand, within MIT1002_04137at 3.906 kb on - strand, within MIT1002_04137at 3.914 kb on - strand, within MIT1002_04137at 3.915 kb on - strand, within MIT1002_04137at 3.928 kb on + strandat 3.936 kb on - strandat 3.943 kb on + strandat 3.973 kb on + strandat 4.079 kb on - strand, within MIT1002_04138at 4.107 kb on + strand, within MIT1002_04138at 4.111 kb on - strand, within MIT1002_04138at 4.115 kb on - strand, within MIT1002_04138at 4.122 kb on - strand, within MIT1002_04138at 4.122 kb on - strand, within MIT1002_04138at 4.123 kb on - strand, within MIT1002_04138at 4.133 kb on + strand, within MIT1002_04138at 4.133 kb on - strand, within MIT1002_04138at 4.140 kb on + strand, within MIT1002_04138at 4.141 kb on - strand, within MIT1002_04138at 4.141 kb on - strand, within MIT1002_04138at 4.199 kb on - strand, within MIT1002_04138at 4.226 kb on + strand, within MIT1002_04138at 4.229 kb on + strand, within MIT1002_04138at 4.229 kb on + strand, within MIT1002_04138at 4.229 kb on + strand, within MIT1002_04138at 4.231 kb on + strand, within MIT1002_04138at 4.231 kb on + strand, within MIT1002_04138at 4.231 kb on + strand, within MIT1002_04138at 4.234 kb on - strand, within MIT1002_04138at 4.237 kb on - strand, within MIT1002_04138at 4.237 kb on - strand, within MIT1002_04138at 4.239 kb on - strand, within MIT1002_04138at 4.239 kb on - strand, within MIT1002_04138at 4.239 kb on - strand, within MIT1002_04138at 4.239 kb on - strand, within MIT1002_04138at 4.239 kb on - strand, within MIT1002_04138at 4.239 kb on - strand, within MIT1002_04138at 4.239 kb on - strand, within MIT1002_04138at 4.239 kb on - strand, within MIT1002_04138at 4.250 kb on + strandat 4.293 kb on - strandat 4.396 kb on + strand, within MIT1002_04139at 4.396 kb on + strand, within MIT1002_04139at 4.396 kb on + strand, within MIT1002_04139at 4.396 kb on + strand, within MIT1002_04139at 4.396 kb on + strand, within MIT1002_04139at 4.396 kb on + strand, within MIT1002_04139at 4.396 kb on + strand, within MIT1002_04139at 4.404 kb on - strand, within MIT1002_04139at 4.404 kb on - strand, within MIT1002_04139at 4.404 kb on - strand, within MIT1002_04139at 4.404 kb on - strand, within MIT1002_04139at 4.404 kb on - strand, within MIT1002_04139at 4.418 kb on - strand, within MIT1002_04139at 4.425 kb on + strand, within MIT1002_04139at 4.430 kb on + strand, within MIT1002_04139at 4.474 kb on + strand, within MIT1002_04139at 4.485 kb on + strand, within MIT1002_04139at 4.493 kb on - strand, within MIT1002_04139at 4.506 kb on + strand, within MIT1002_04139at 4.514 kb on - strand, within MIT1002_04139at 4.535 kb on + strand, within MIT1002_04139at 4.575 kb on - strand, within MIT1002_04139at 4.591 kb on + strand, within MIT1002_04139at 4.654 kb on + strand, within MIT1002_04139at 4.752 kb on - strandat 4.752 kb on - strandat 4.820 kb on + strandat 4.827 kb on + strandat 4.828 kb on - strandat 4.828 kb on - strandat 4.843 kb on + strandat 4.868 kb on + strandat 4.868 kb on - strandat 4.882 kb on + strandat 4.882 kb on + strandat 4.882 kb on + strandat 4.882 kb on + strandat 4.884 kb on - strandat 4.887 kb on + strandat 4.887 kb on + strandat 4.890 kb on - strandat 4.890 kb on - strandat 4.890 kb on - strandat 4.890 kb on - strandat 4.890 kb on - strandat 4.890 kb on - strandat 4.890 kb on - strandat 4.895 kb on - strandat 4.911 kb on + strandat 4.956 kb on - strandat 4.980 kb on - strandat 4.982 kb on - strandat 5.013 kb on + strandat 5.020 kb on - strandat 5.021 kb on - strandat 5.036 kb on + strandat 5.056 kb on - strandat 5.069 kb on - strandat 5.078 kb on + strandat 5.078 kb on + strandat 5.086 kb on - strandat 5.141 kb on + strandat 5.205 kb on + strand, within MIT1002_04140

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6
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3,059 + +0.9
3,064 + -2.4
3,064 + +0.8
3,122 - -0.7
3,125 - -0.8
3,142 + +0.7
3,186 + -0.5
3,187 - -0.2
3,196 - +1.2
3,202 - +1.1
3,217 + -0.5
3,217 + +0.6
3,225 - -1.1
3,225 - +1.3
3,225 - -0.5
3,225 - -0.4
3,230 - +0.5
3,257 - -0.9
3,325 - +0.3
3,333 - MIT1002_04137 0.10 -0.1
3,340 - MIT1002_04137 0.11 -1.3
3,401 + MIT1002_04137 0.19 -0.1
3,437 + MIT1002_04137 0.24 +1.0
3,437 + MIT1002_04137 0.24 +1.7
3,437 - MIT1002_04137 0.24 +1.1
3,445 - MIT1002_04137 0.25 +0.5
3,445 - MIT1002_04137 0.25 -0.1
3,445 - MIT1002_04137 0.25 +0.8
3,452 + MIT1002_04137 0.26 -1.6
3,455 - MIT1002_04137 0.27 -2.4
3,522 + MIT1002_04137 0.36 -0.4
3,522 + MIT1002_04137 0.36 +1.0
3,530 - MIT1002_04137 0.37 +1.4
3,557 + MIT1002_04137 0.41 +0.1
3,583 - MIT1002_04137 0.44 -0.5
3,583 - MIT1002_04137 0.44 +0.0
3,634 + MIT1002_04137 0.51 +1.0
3,634 + MIT1002_04137 0.51 +0.7
3,634 + MIT1002_04137 0.51 -0.5
3,634 + MIT1002_04137 0.51 +0.5
3,634 + MIT1002_04137 0.51 +1.3
3,642 - MIT1002_04137 0.52 -1.2
3,642 - MIT1002_04137 0.52 -0.7
3,661 - MIT1002_04137 0.55 +0.6
3,663 - MIT1002_04137 0.55 +0.6
3,702 + MIT1002_04137 0.60 -3.0
3,710 + MIT1002_04137 0.61 +0.6
3,757 - MIT1002_04137 0.68 +1.6
3,801 + MIT1002_04137 0.74 +1.0
3,801 + MIT1002_04137 0.74 +0.5
3,801 + MIT1002_04137 0.74 -0.4
3,801 + MIT1002_04137 0.74 +0.1
3,809 + MIT1002_04137 0.75 +0.8
3,809 + MIT1002_04137 0.75 -0.9
3,809 - MIT1002_04137 0.75 +0.5
3,817 + MIT1002_04137 0.76 -1.1
3,817 - MIT1002_04137 0.76 -0.7
3,817 - MIT1002_04137 0.76 +3.1
3,817 - MIT1002_04137 0.76 +1.1
3,852 + MIT1002_04137 0.81 -0.5
3,906 - MIT1002_04137 0.88 -0.4
3,914 - MIT1002_04137 0.89 -0.3
3,915 - MIT1002_04137 0.89 -0.7
3,928 + -1.0
3,936 - +0.8
3,943 + -0.6
3,973 + +0.2
4,079 - MIT1002_04138 0.13 -1.3
4,107 + MIT1002_04138 0.26 +0.9
4,111 - MIT1002_04138 0.28 +0.1
4,115 - MIT1002_04138 0.30 +0.3
4,122 - MIT1002_04138 0.33 -2.3
4,122 - MIT1002_04138 0.33 -0.2
4,123 - MIT1002_04138 0.33 +0.3
4,133 + MIT1002_04138 0.38 +0.2
4,133 - MIT1002_04138 0.38 +1.8
4,140 + MIT1002_04138 0.41 +0.5
4,141 - MIT1002_04138 0.42 -0.6
4,141 - MIT1002_04138 0.42 -0.1
4,199 - MIT1002_04138 0.68 -0.7
4,226 + MIT1002_04138 0.80 -0.7
4,229 + MIT1002_04138 0.82 -1.0
4,229 + MIT1002_04138 0.82 -0.3
4,229 + MIT1002_04138 0.82 -1.2
4,231 + MIT1002_04138 0.83 +0.2
4,231 + MIT1002_04138 0.83 -0.2
4,231 + MIT1002_04138 0.83 +1.6
4,234 - MIT1002_04138 0.84 +1.9
4,237 - MIT1002_04138 0.85 -1.1
4,237 - MIT1002_04138 0.85 +0.7
4,239 - MIT1002_04138 0.86 -0.5
4,239 - MIT1002_04138 0.86 -0.1
4,239 - MIT1002_04138 0.86 +0.9
4,239 - MIT1002_04138 0.86 +0.3
4,239 - MIT1002_04138 0.86 +1.8
4,239 - MIT1002_04138 0.86 -0.2
4,239 - MIT1002_04138 0.86 -0.1
4,239 - MIT1002_04138 0.86 +0.2
4,250 + -0.7
4,293 - +0.1
4,396 + MIT1002_04139 0.24 +1.1
4,396 + MIT1002_04139 0.24 +0.4
4,396 + MIT1002_04139 0.24 +0.2
4,396 + MIT1002_04139 0.24 +0.1
4,396 + MIT1002_04139 0.24 +2.6
4,396 + MIT1002_04139 0.24 +1.1
4,396 + MIT1002_04139 0.24 -1.4
4,404 - MIT1002_04139 0.26 -0.2
4,404 - MIT1002_04139 0.26 +1.2
4,404 - MIT1002_04139 0.26 -1.1
4,404 - MIT1002_04139 0.26 -1.3
4,404 - MIT1002_04139 0.26 -0.6
4,418 - MIT1002_04139 0.28 -1.3
4,425 + MIT1002_04139 0.30 +1.3
4,430 + MIT1002_04139 0.31 -0.1
4,474 + MIT1002_04139 0.39 +0.9
4,485 + MIT1002_04139 0.42 -0.2
4,493 - MIT1002_04139 0.43 +0.1
4,506 + MIT1002_04139 0.46 -1.2
4,514 - MIT1002_04139 0.47 +0.2
4,535 + MIT1002_04139 0.51 -0.5
4,575 - MIT1002_04139 0.59 -0.1
4,591 + MIT1002_04139 0.62 -1.9
4,654 + MIT1002_04139 0.74 +0.5
4,752 - -0.9
4,752 - -1.0
4,820 + -1.5
4,827 + +0.2
4,828 - +0.4
4,828 - +1.1
4,843 + -0.5
4,868 + +0.7
4,868 - +0.4
4,882 + -0.0
4,882 + +0.4
4,882 + +0.7
4,882 + +1.6
4,884 - +1.3
4,887 + +0.0
4,887 + -1.6
4,890 - -1.0
4,890 - -2.0
4,890 - +1.4
4,890 - -0.7
4,890 - -0.0
4,890 - +1.4
4,890 - -0.4
4,895 - +1.3
4,911 + +0.1
4,956 - +0.1
4,980 - +0.2
4,982 - -0.1
5,013 + -1.2
5,020 - +0.7
5,021 - -0.6
5,036 + -0.1
5,056 - -1.2
5,069 - +0.3
5,078 + -0.2
5,078 + +0.3
5,086 - -0.9
5,141 + +0.0
5,205 + MIT1002_04140 0.14 -0.5

Or see this region's nucleotide sequence