Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04134

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_04134 and MIT1002_04135 are separated by 29 nucleotides MIT1002_04134: MIT1002_04134 - Sporulation initiation inhibitor protein soj, at 1 to 927 _04134 MIT1002_04135: MIT1002_04135 - ParB/RepB/Spo0J family partition protein, at 957 to 2,048 _04135 Position (kb) 0 1Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 0.008 kb on + strandat 0.008 kb on + strandat 0.008 kb on + strandat 0.034 kb on - strandat 0.051 kb on + strandat 0.051 kb on + strandat 0.054 kb on + strandat 0.059 kb on - strandat 0.061 kb on + strandat 0.074 kb on - strandat 0.100 kb on - strand, within MIT1002_04134at 0.116 kb on + strand, within MIT1002_04134at 0.117 kb on - strand, within MIT1002_04134at 0.119 kb on - strand, within MIT1002_04134at 0.129 kb on + strand, within MIT1002_04134at 0.129 kb on - strand, within MIT1002_04134at 0.151 kb on + strand, within MIT1002_04134at 0.172 kb on - strand, within MIT1002_04134at 0.177 kb on - strand, within MIT1002_04134at 0.227 kb on + strand, within MIT1002_04134at 0.235 kb on + strand, within MIT1002_04134at 0.235 kb on + strand, within MIT1002_04134at 0.237 kb on + strand, within MIT1002_04134at 0.266 kb on + strand, within MIT1002_04134at 0.278 kb on - strand, within MIT1002_04134at 0.304 kb on + strand, within MIT1002_04134at 0.319 kb on + strand, within MIT1002_04134at 0.345 kb on - strand, within MIT1002_04134at 0.345 kb on - strand, within MIT1002_04134at 0.352 kb on + strand, within MIT1002_04134at 0.360 kb on + strand, within MIT1002_04134at 0.370 kb on + strand, within MIT1002_04134at 0.371 kb on + strand, within MIT1002_04134at 0.371 kb on + strand, within MIT1002_04134at 0.373 kb on + strand, within MIT1002_04134at 0.373 kb on + strand, within MIT1002_04134at 0.374 kb on + strand, within MIT1002_04134at 0.383 kb on + strand, within MIT1002_04134at 0.391 kb on - strand, within MIT1002_04134at 0.411 kb on - strand, within MIT1002_04134at 0.433 kb on + strand, within MIT1002_04134at 0.433 kb on + strand, within MIT1002_04134at 0.462 kb on + strand, within MIT1002_04134at 0.474 kb on + strand, within MIT1002_04134at 0.475 kb on + strand, within MIT1002_04134at 0.482 kb on - strand, within MIT1002_04134at 0.482 kb on - strand, within MIT1002_04134at 0.483 kb on - strand, within MIT1002_04134at 0.494 kb on + strand, within MIT1002_04134at 0.529 kb on + strand, within MIT1002_04134at 0.529 kb on + strand, within MIT1002_04134at 0.537 kb on - strand, within MIT1002_04134at 0.542 kb on + strand, within MIT1002_04134at 0.542 kb on + strand, within MIT1002_04134at 0.542 kb on + strand, within MIT1002_04134at 0.570 kb on + strand, within MIT1002_04134at 0.570 kb on + strand, within MIT1002_04134at 0.590 kb on + strand, within MIT1002_04134at 0.595 kb on + strand, within MIT1002_04134at 0.599 kb on + strand, within MIT1002_04134at 0.611 kb on + strand, within MIT1002_04134at 0.611 kb on + strand, within MIT1002_04134at 0.614 kb on + strand, within MIT1002_04134at 0.614 kb on + strand, within MIT1002_04134at 0.617 kb on - strand, within MIT1002_04134at 0.619 kb on + strand, within MIT1002_04134at 0.622 kb on - strand, within MIT1002_04134at 0.622 kb on - strand, within MIT1002_04134at 0.633 kb on + strand, within MIT1002_04134at 0.633 kb on + strand, within MIT1002_04134at 0.633 kb on + strand, within MIT1002_04134at 0.633 kb on + strand, within MIT1002_04134at 0.665 kb on + strand, within MIT1002_04134at 0.673 kb on - strand, within MIT1002_04134at 0.673 kb on - strand, within MIT1002_04134at 0.682 kb on + strand, within MIT1002_04134at 0.795 kb on + strand, within MIT1002_04134at 0.797 kb on + strand, within MIT1002_04134at 0.797 kb on + strand, within MIT1002_04134at 0.797 kb on + strand, within MIT1002_04134at 0.797 kb on + strand, within MIT1002_04134at 0.797 kb on + strand, within MIT1002_04134at 0.797 kb on + strand, within MIT1002_04134at 0.797 kb on + strand, within MIT1002_04134at 0.797 kb on + strand, within MIT1002_04134at 0.797 kb on + strand, within MIT1002_04134at 0.797 kb on + strand, within MIT1002_04134at 0.797 kb on + strand, within MIT1002_04134at 0.797 kb on + strand, within MIT1002_04134at 0.797 kb on + strand, within MIT1002_04134at 0.803 kb on + strand, within MIT1002_04134at 0.805 kb on - strand, within MIT1002_04134at 0.805 kb on - strand, within MIT1002_04134at 0.805 kb on - strand, within MIT1002_04134at 0.816 kb on + strand, within MIT1002_04134at 0.816 kb on + strand, within MIT1002_04134at 0.821 kb on + strand, within MIT1002_04134at 0.823 kb on - strand, within MIT1002_04134at 0.824 kb on - strand, within MIT1002_04134at 0.824 kb on - strand, within MIT1002_04134at 0.847 kb on + strandat 0.894 kb on + strandat 0.899 kb on + strandat 0.899 kb on + strandat 0.902 kb on - strandat 0.907 kb on - strandat 0.912 kb on - strandat 0.921 kb on + strandat 0.946 kb on - strandat 0.949 kb on + strandat 0.955 kb on - strandat 0.959 kb on + strandat 0.960 kb on - strandat 0.967 kb on - strandat 1.005 kb on - strandat 1.068 kb on - strand, within MIT1002_04135at 1.082 kb on + strand, within MIT1002_04135at 1.090 kb on - strand, within MIT1002_04135at 1.090 kb on - strand, within MIT1002_04135at 1.144 kb on - strand, within MIT1002_04135at 1.156 kb on + strand, within MIT1002_04135at 1.157 kb on - strand, within MIT1002_04135at 1.159 kb on + strand, within MIT1002_04135at 1.165 kb on - strand, within MIT1002_04135at 1.165 kb on - strand, within MIT1002_04135at 1.165 kb on - strand, within MIT1002_04135at 1.165 kb on - strand, within MIT1002_04135at 1.188 kb on + strand, within MIT1002_04135at 1.207 kb on + strand, within MIT1002_04135at 1.278 kb on + strand, within MIT1002_04135at 1.280 kb on + strand, within MIT1002_04135at 1.280 kb on + strand, within MIT1002_04135at 1.280 kb on + strand, within MIT1002_04135at 1.280 kb on + strand, within MIT1002_04135at 1.280 kb on + strand, within MIT1002_04135at 1.280 kb on + strand, within MIT1002_04135at 1.280 kb on + strand, within MIT1002_04135at 1.280 kb on + strand, within MIT1002_04135at 1.288 kb on - strand, within MIT1002_04135at 1.288 kb on - strand, within MIT1002_04135at 1.288 kb on - strand, within MIT1002_04135at 1.288 kb on - strand, within MIT1002_04135at 1.288 kb on - strand, within MIT1002_04135at 1.288 kb on - strand, within MIT1002_04135at 1.288 kb on - strand, within MIT1002_04135at 1.288 kb on - strand, within MIT1002_04135at 1.288 kb on - strand, within MIT1002_04135at 1.300 kb on + strand, within MIT1002_04135at 1.308 kb on - strand, within MIT1002_04135at 1.310 kb on + strand, within MIT1002_04135at 1.313 kb on - strand, within MIT1002_04135at 1.318 kb on - strand, within MIT1002_04135at 1.318 kb on - strand, within MIT1002_04135at 1.318 kb on - strand, within MIT1002_04135at 1.318 kb on - strand, within MIT1002_04135at 1.322 kb on + strand, within MIT1002_04135at 1.330 kb on + strand, within MIT1002_04135at 1.330 kb on + strand, within MIT1002_04135at 1.336 kb on + strand, within MIT1002_04135at 1.340 kb on - strand, within MIT1002_04135at 1.414 kb on - strand, within MIT1002_04135at 1.415 kb on + strand, within MIT1002_04135at 1.529 kb on + strand, within MIT1002_04135at 1.564 kb on - strand, within MIT1002_04135at 1.570 kb on - strand, within MIT1002_04135at 1.613 kb on + strand, within MIT1002_04135at 1.613 kb on + strand, within MIT1002_04135at 1.613 kb on + strand, within MIT1002_04135at 1.613 kb on - strand, within MIT1002_04135at 1.624 kb on + strand, within MIT1002_04135at 1.626 kb on - strand, within MIT1002_04135at 1.626 kb on - strand, within MIT1002_04135at 1.626 kb on - strand, within MIT1002_04135at 1.632 kb on - strand, within MIT1002_04135at 1.706 kb on + strand, within MIT1002_04135at 1.709 kb on - strand, within MIT1002_04135at 1.723 kb on + strand, within MIT1002_04135at 1.744 kb on - strand, within MIT1002_04135at 1.744 kb on - strand, within MIT1002_04135at 1.757 kb on + strand, within MIT1002_04135at 1.757 kb on + strand, within MIT1002_04135at 1.757 kb on + strand, within MIT1002_04135at 1.757 kb on + strand, within MIT1002_04135at 1.757 kb on + strand, within MIT1002_04135at 1.757 kb on + strand, within MIT1002_04135at 1.757 kb on + strand, within MIT1002_04135at 1.757 kb on + strand, within MIT1002_04135at 1.757 kb on + strand, within MIT1002_04135at 1.757 kb on + strand, within MIT1002_04135at 1.757 kb on + strand, within MIT1002_04135at 1.765 kb on + strand, within MIT1002_04135at 1.765 kb on - strand, within MIT1002_04135at 1.765 kb on - strand, within MIT1002_04135at 1.765 kb on - strand, within MIT1002_04135at 1.765 kb on - strand, within MIT1002_04135at 1.765 kb on - strand, within MIT1002_04135at 1.801 kb on + strand, within MIT1002_04135at 1.810 kb on + strand, within MIT1002_04135at 1.810 kb on + strand, within MIT1002_04135at 1.810 kb on + strand, within MIT1002_04135at 1.810 kb on + strand, within MIT1002_04135at 1.810 kb on + strand, within MIT1002_04135at 1.810 kb on + strand, within MIT1002_04135at 1.810 kb on + strand, within MIT1002_04135at 1.810 kb on + strand, within MIT1002_04135at 1.810 kb on + strand, within MIT1002_04135at 1.810 kb on + strand, within MIT1002_04135at 1.818 kb on - strand, within MIT1002_04135at 1.818 kb on - strand, within MIT1002_04135at 1.818 kb on - strand, within MIT1002_04135at 1.826 kb on - strand, within MIT1002_04135at 1.860 kb on - strand, within MIT1002_04135at 1.892 kb on - strand, within MIT1002_04135

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6
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8 + -3.8
8 + -0.2
8 + -1.1
34 - -1.4
51 + +0.1
51 + -3.1
54 + -1.1
59 - -3.0
61 + -2.9
74 - -3.2
100 - MIT1002_04134 0.11 -3.0
116 + MIT1002_04134 0.12 -1.9
117 - MIT1002_04134 0.13 -0.9
119 - MIT1002_04134 0.13 -2.9
129 + MIT1002_04134 0.14 -0.9
129 - MIT1002_04134 0.14 -1.7
151 + MIT1002_04134 0.16 -1.7
172 - MIT1002_04134 0.18 -0.2
177 - MIT1002_04134 0.19 -2.3
227 + MIT1002_04134 0.24 +0.1
235 + MIT1002_04134 0.25 -2.3
235 + MIT1002_04134 0.25 -3.6
237 + MIT1002_04134 0.25 -2.7
266 + MIT1002_04134 0.29 -0.2
278 - MIT1002_04134 0.30 -0.6
304 + MIT1002_04134 0.33 +0.3
319 + MIT1002_04134 0.34 -4.0
345 - MIT1002_04134 0.37 +0.5
345 - MIT1002_04134 0.37 -1.7
352 + MIT1002_04134 0.38 -3.6
360 + MIT1002_04134 0.39 -2.3
370 + MIT1002_04134 0.40 -2.7
371 + MIT1002_04134 0.40 -0.2
371 + MIT1002_04134 0.40 -2.6
373 + MIT1002_04134 0.40 -0.5
373 + MIT1002_04134 0.40 -2.3
374 + MIT1002_04134 0.40 -0.4
383 + MIT1002_04134 0.41 -1.5
391 - MIT1002_04134 0.42 -4.3
411 - MIT1002_04134 0.44 -2.6
433 + MIT1002_04134 0.47 -4.7
433 + MIT1002_04134 0.47 -2.4
462 + MIT1002_04134 0.50 -4.7
474 + MIT1002_04134 0.51 -2.8
475 + MIT1002_04134 0.51 -3.2
482 - MIT1002_04134 0.52 -2.2
482 - MIT1002_04134 0.52 -0.2
483 - MIT1002_04134 0.52 -3.2
494 + MIT1002_04134 0.53 -2.3
529 + MIT1002_04134 0.57 -3.0
529 + MIT1002_04134 0.57 -1.3
537 - MIT1002_04134 0.58 -4.0
542 + MIT1002_04134 0.58 -0.9
542 + MIT1002_04134 0.58 -2.4
542 + MIT1002_04134 0.58 -3.4
570 + MIT1002_04134 0.61 -0.4
570 + MIT1002_04134 0.61 +1.1
590 + MIT1002_04134 0.64 -0.2
595 + MIT1002_04134 0.64 -2.7
599 + MIT1002_04134 0.65 +0.8
611 + MIT1002_04134 0.66 +0.3
611 + MIT1002_04134 0.66 -3.3
614 + MIT1002_04134 0.66 +0.3
614 + MIT1002_04134 0.66 -4.1
617 - MIT1002_04134 0.66 -0.4
619 + MIT1002_04134 0.67 -0.6
622 - MIT1002_04134 0.67 -1.5
622 - MIT1002_04134 0.67 -1.2
633 + MIT1002_04134 0.68 -0.6
633 + MIT1002_04134 0.68 -0.4
633 + MIT1002_04134 0.68 -4.7
633 + MIT1002_04134 0.68 -0.8
665 + MIT1002_04134 0.72 -5.1
673 - MIT1002_04134 0.72 -2.3
673 - MIT1002_04134 0.72 +0.3
682 + MIT1002_04134 0.73 -2.5
795 + MIT1002_04134 0.86 -4.6
797 + MIT1002_04134 0.86 -0.2
797 + MIT1002_04134 0.86 +0.8
797 + MIT1002_04134 0.86 -4.0
797 + MIT1002_04134 0.86 -4.3
797 + MIT1002_04134 0.86 -2.9
797 + MIT1002_04134 0.86 -0.4
797 + MIT1002_04134 0.86 -2.5
797 + MIT1002_04134 0.86 -1.7
797 + MIT1002_04134 0.86 +0.3
797 + MIT1002_04134 0.86 -2.8
797 + MIT1002_04134 0.86 +0.5
797 + MIT1002_04134 0.86 -4.2
797 + MIT1002_04134 0.86 -4.2
803 + MIT1002_04134 0.87 -4.4
805 - MIT1002_04134 0.87 -1.8
805 - MIT1002_04134 0.87 -1.4
805 - MIT1002_04134 0.87 -0.2
816 + MIT1002_04134 0.88 -0.4
816 + MIT1002_04134 0.88 -2.2
821 + MIT1002_04134 0.88 -2.9
823 - MIT1002_04134 0.89 -2.8
824 - MIT1002_04134 0.89 -0.4
824 - MIT1002_04134 0.89 -2.4
847 + -3.4
894 + -1.5
899 + -3.3
899 + -2.5
902 - -2.5
907 - -1.5
912 - -2.6
921 + -1.0
946 - -2.5
949 + -2.2
955 - -1.0
959 + -1.2
960 - -1.2
967 - -1.8
1,005 - -2.9
1,068 - MIT1002_04135 0.10 +0.5
1,082 + MIT1002_04135 0.11 -2.5
1,090 - MIT1002_04135 0.12 -0.6
1,090 - MIT1002_04135 0.12 +0.8
1,144 - MIT1002_04135 0.17 -0.1
1,156 + MIT1002_04135 0.18 -1.9
1,157 - MIT1002_04135 0.18 -0.5
1,159 + MIT1002_04135 0.18 -1.5
1,165 - MIT1002_04135 0.19 -0.5
1,165 - MIT1002_04135 0.19 -2.5
1,165 - MIT1002_04135 0.19 -1.4
1,165 - MIT1002_04135 0.19 +0.5
1,188 + MIT1002_04135 0.21 -2.5
1,207 + MIT1002_04135 0.23 +1.1
1,278 + MIT1002_04135 0.29 -2.4
1,280 + MIT1002_04135 0.30 -1.4
1,280 + MIT1002_04135 0.30 -3.2
1,280 + MIT1002_04135 0.30 -1.0
1,280 + MIT1002_04135 0.30 -2.3
1,280 + MIT1002_04135 0.30 -1.1
1,280 + MIT1002_04135 0.30 -1.5
1,280 + MIT1002_04135 0.30 +0.8
1,280 + MIT1002_04135 0.30 -0.1
1,288 - MIT1002_04135 0.30 -0.5
1,288 - MIT1002_04135 0.30 -1.9
1,288 - MIT1002_04135 0.30 -2.1
1,288 - MIT1002_04135 0.30 -0.4
1,288 - MIT1002_04135 0.30 -1.7
1,288 - MIT1002_04135 0.30 -2.2
1,288 - MIT1002_04135 0.30 -0.2
1,288 - MIT1002_04135 0.30 -0.8
1,288 - MIT1002_04135 0.30 -4.7
1,300 + MIT1002_04135 0.31 -1.0
1,308 - MIT1002_04135 0.32 +0.5
1,310 + MIT1002_04135 0.32 +0.3
1,313 - MIT1002_04135 0.33 -0.9
1,318 - MIT1002_04135 0.33 -2.5
1,318 - MIT1002_04135 0.33 -2.0
1,318 - MIT1002_04135 0.33 -1.5
1,318 - MIT1002_04135 0.33 -1.1
1,322 + MIT1002_04135 0.33 -1.4
1,330 + MIT1002_04135 0.34 -0.6
1,330 + MIT1002_04135 0.34 +0.8
1,336 + MIT1002_04135 0.35 -2.7
1,340 - MIT1002_04135 0.35 -1.0
1,414 - MIT1002_04135 0.42 +0.8
1,415 + MIT1002_04135 0.42 -0.2
1,529 + MIT1002_04135 0.52 +0.3
1,564 - MIT1002_04135 0.56 -1.2
1,570 - MIT1002_04135 0.56 -1.7
1,613 + MIT1002_04135 0.60 +0.5
1,613 + MIT1002_04135 0.60 -1.0
1,613 + MIT1002_04135 0.60 +0.5
1,613 - MIT1002_04135 0.60 -1.7
1,624 + MIT1002_04135 0.61 -1.0
1,626 - MIT1002_04135 0.61 -2.2
1,626 - MIT1002_04135 0.61 -2.6
1,626 - MIT1002_04135 0.61 -1.1
1,632 - MIT1002_04135 0.62 -1.7
1,706 + MIT1002_04135 0.69 -1.9
1,709 - MIT1002_04135 0.69 -0.2
1,723 + MIT1002_04135 0.70 -0.2
1,744 - MIT1002_04135 0.72 -2.5
1,744 - MIT1002_04135 0.72 -2.8
1,757 + MIT1002_04135 0.73 -3.0
1,757 + MIT1002_04135 0.73 -1.4
1,757 + MIT1002_04135 0.73 -0.1
1,757 + MIT1002_04135 0.73 -2.1
1,757 + MIT1002_04135 0.73 -3.1
1,757 + MIT1002_04135 0.73 -1.7
1,757 + MIT1002_04135 0.73 -1.3
1,757 + MIT1002_04135 0.73 -2.8
1,757 + MIT1002_04135 0.73 -1.1
1,757 + MIT1002_04135 0.73 -0.9
1,757 + MIT1002_04135 0.73 -0.8
1,765 + MIT1002_04135 0.74 -1.1
1,765 - MIT1002_04135 0.74 -1.0
1,765 - MIT1002_04135 0.74 -2.0
1,765 - MIT1002_04135 0.74 -1.0
1,765 - MIT1002_04135 0.74 +0.3
1,765 - MIT1002_04135 0.74 -1.0
1,801 + MIT1002_04135 0.77 -0.2
1,810 + MIT1002_04135 0.78 -2.5
1,810 + MIT1002_04135 0.78 +0.8
1,810 + MIT1002_04135 0.78 -2.2
1,810 + MIT1002_04135 0.78 -1.5
1,810 + MIT1002_04135 0.78 -1.9
1,810 + MIT1002_04135 0.78 -2.1
1,810 + MIT1002_04135 0.78 -2.0
1,810 + MIT1002_04135 0.78 -1.4
1,810 + MIT1002_04135 0.78 -1.5
1,810 + MIT1002_04135 0.78 -1.5
1,818 - MIT1002_04135 0.79 -2.8
1,818 - MIT1002_04135 0.79 -1.2
1,818 - MIT1002_04135 0.79 -2.6
1,826 - MIT1002_04135 0.80 +0.3
1,860 - MIT1002_04135 0.83 -0.4
1,892 - MIT1002_04135 0.86 -1.2

Or see this region's nucleotide sequence