Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04067

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_04065 and MIT1002_04066 are separated by 24 nucleotidesMIT1002_04066 and MIT1002_04067 are separated by 162 nucleotidesMIT1002_04067 and MIT1002_04068 are separated by 25 nucleotidesMIT1002_04068 and MIT1002_04069 are separated by 21 nucleotidesMIT1002_04069 and MIT1002_04070 overlap by 11 nucleotides MIT1002_04065: MIT1002_04065 - imidazolonepropionase, at 4,565,820 to 4,567,112 _04065 MIT1002_04066: MIT1002_04066 - SNARE associated Golgi protein, at 4,567,137 to 4,567,727 _04066 MIT1002_04067: MIT1002_04067 - hypothetical protein, at 4,567,890 to 4,568,351 _04067 MIT1002_04068: MIT1002_04068 - hypothetical protein, at 4,568,377 to 4,568,556 _04068 MIT1002_04069: MIT1002_04069 - Sulfurtransferase TusA, at 4,568,578 to 4,568,838 _04069 MIT1002_04070: MIT1002_04070 - Orotate phosphoribosyltransferase, at 4,568,828 to 4,569,469 _04070 Position (kb) 4567 4568 4569Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4566.899 kb on - strand, within MIT1002_04065at 4566.915 kb on + strand, within MIT1002_04065at 4566.915 kb on + strand, within MIT1002_04065at 4566.915 kb on + strand, within MIT1002_04065at 4566.915 kb on + strand, within MIT1002_04065at 4566.916 kb on + strand, within MIT1002_04065at 4566.923 kb on - strand, within MIT1002_04065at 4566.946 kb on - strand, within MIT1002_04065at 4566.994 kb on + strandat 4566.994 kb on + strandat 4567.004 kb on + strandat 4567.029 kb on + strandat 4567.037 kb on - strandat 4567.037 kb on - strandat 4567.185 kb on + strandat 4567.195 kb on + strandat 4567.202 kb on + strand, within MIT1002_04066at 4567.231 kb on + strand, within MIT1002_04066at 4567.328 kb on - strand, within MIT1002_04066at 4567.328 kb on - strand, within MIT1002_04066at 4567.344 kb on + strand, within MIT1002_04066at 4567.344 kb on + strand, within MIT1002_04066at 4567.344 kb on + strand, within MIT1002_04066at 4567.344 kb on + strand, within MIT1002_04066at 4567.344 kb on + strand, within MIT1002_04066at 4567.344 kb on + strand, within MIT1002_04066at 4567.344 kb on + strand, within MIT1002_04066at 4567.344 kb on + strand, within MIT1002_04066at 4567.344 kb on + strand, within MIT1002_04066at 4567.347 kb on - strand, within MIT1002_04066at 4567.351 kb on + strand, within MIT1002_04066at 4567.352 kb on - strand, within MIT1002_04066at 4567.352 kb on - strand, within MIT1002_04066at 4567.352 kb on - strand, within MIT1002_04066at 4567.352 kb on - strand, within MIT1002_04066at 4567.352 kb on - strand, within MIT1002_04066at 4567.352 kb on - strand, within MIT1002_04066at 4567.352 kb on - strand, within MIT1002_04066at 4567.393 kb on + strand, within MIT1002_04066at 4567.427 kb on - strand, within MIT1002_04066at 4567.484 kb on - strand, within MIT1002_04066at 4567.522 kb on - strand, within MIT1002_04066at 4567.589 kb on + strand, within MIT1002_04066at 4567.622 kb on + strand, within MIT1002_04066at 4567.622 kb on + strand, within MIT1002_04066at 4567.622 kb on + strand, within MIT1002_04066at 4567.627 kb on + strand, within MIT1002_04066at 4567.630 kb on - strand, within MIT1002_04066at 4567.630 kb on - strand, within MIT1002_04066at 4567.630 kb on - strand, within MIT1002_04066at 4567.630 kb on - strand, within MIT1002_04066at 4567.630 kb on - strand, within MIT1002_04066at 4567.630 kb on - strand, within MIT1002_04066at 4567.630 kb on - strand, within MIT1002_04066at 4567.678 kb on + strandat 4567.686 kb on - strandat 4567.736 kb on + strandat 4567.739 kb on - strandat 4567.745 kb on + strandat 4567.767 kb on + strandat 4567.784 kb on + strandat 4567.814 kb on - strandat 4567.912 kb on - strandat 4567.912 kb on - strandat 4567.940 kb on - strand, within MIT1002_04067at 4567.942 kb on - strand, within MIT1002_04067at 4567.961 kb on + strand, within MIT1002_04067at 4567.961 kb on + strand, within MIT1002_04067at 4567.964 kb on - strand, within MIT1002_04067at 4567.969 kb on - strand, within MIT1002_04067at 4568.001 kb on - strand, within MIT1002_04067at 4568.025 kb on + strand, within MIT1002_04067at 4568.033 kb on - strand, within MIT1002_04067at 4568.056 kb on + strand, within MIT1002_04067at 4568.057 kb on + strand, within MIT1002_04067at 4568.071 kb on - strand, within MIT1002_04067at 4568.078 kb on + strand, within MIT1002_04067at 4568.086 kb on - strand, within MIT1002_04067at 4568.086 kb on - strand, within MIT1002_04067at 4568.086 kb on - strand, within MIT1002_04067at 4568.115 kb on + strand, within MIT1002_04067at 4568.136 kb on + strand, within MIT1002_04067at 4568.152 kb on - strand, within MIT1002_04067at 4568.245 kb on + strand, within MIT1002_04067at 4568.290 kb on + strand, within MIT1002_04067at 4568.290 kb on + strand, within MIT1002_04067at 4568.290 kb on + strand, within MIT1002_04067at 4568.298 kb on - strand, within MIT1002_04067at 4568.298 kb on - strand, within MIT1002_04067at 4568.298 kb on - strand, within MIT1002_04067at 4568.298 kb on - strand, within MIT1002_04067at 4568.310 kb on - strandat 4568.424 kb on + strand, within MIT1002_04068at 4568.464 kb on + strand, within MIT1002_04068at 4568.464 kb on + strand, within MIT1002_04068at 4568.464 kb on - strand, within MIT1002_04068at 4568.467 kb on - strand, within MIT1002_04068at 4568.472 kb on - strand, within MIT1002_04068at 4568.489 kb on + strand, within MIT1002_04068at 4568.861 kb on - strandat 4569.083 kb on - strand, within MIT1002_04070

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6
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4,566,899 - MIT1002_04065 0.83 -1.8
4,566,915 + MIT1002_04065 0.85 -0.8
4,566,915 + MIT1002_04065 0.85 -2.4
4,566,915 + MIT1002_04065 0.85 +0.2
4,566,915 + MIT1002_04065 0.85 +0.3
4,566,916 + MIT1002_04065 0.85 -0.1
4,566,923 - MIT1002_04065 0.85 +1.4
4,566,946 - MIT1002_04065 0.87 -0.1
4,566,994 + -1.2
4,566,994 + -1.4
4,567,004 + -2.0
4,567,029 + -1.1
4,567,037 - -0.4
4,567,037 - -0.9
4,567,185 + -0.5
4,567,195 + +0.4
4,567,202 + MIT1002_04066 0.11 +1.1
4,567,231 + MIT1002_04066 0.16 +0.2
4,567,328 - MIT1002_04066 0.32 -1.2
4,567,328 - MIT1002_04066 0.32 +1.7
4,567,344 + MIT1002_04066 0.35 +1.1
4,567,344 + MIT1002_04066 0.35 +0.2
4,567,344 + MIT1002_04066 0.35 -0.4
4,567,344 + MIT1002_04066 0.35 +0.9
4,567,344 + MIT1002_04066 0.35 -0.3
4,567,344 + MIT1002_04066 0.35 -2.4
4,567,344 + MIT1002_04066 0.35 +0.6
4,567,344 + MIT1002_04066 0.35 -0.4
4,567,344 + MIT1002_04066 0.35 -0.7
4,567,347 - MIT1002_04066 0.36 -1.1
4,567,351 + MIT1002_04066 0.36 -0.5
4,567,352 - MIT1002_04066 0.36 +2.5
4,567,352 - MIT1002_04066 0.36 +0.4
4,567,352 - MIT1002_04066 0.36 +1.4
4,567,352 - MIT1002_04066 0.36 +1.3
4,567,352 - MIT1002_04066 0.36 -3.3
4,567,352 - MIT1002_04066 0.36 +1.4
4,567,352 - MIT1002_04066 0.36 -0.5
4,567,393 + MIT1002_04066 0.43 +1.2
4,567,427 - MIT1002_04066 0.49 -0.1
4,567,484 - MIT1002_04066 0.59 -1.0
4,567,522 - MIT1002_04066 0.65 -1.6
4,567,589 + MIT1002_04066 0.76 -0.1
4,567,622 + MIT1002_04066 0.82 +1.4
4,567,622 + MIT1002_04066 0.82 +1.7
4,567,622 + MIT1002_04066 0.82 +1.7
4,567,627 + MIT1002_04066 0.83 -0.4
4,567,630 - MIT1002_04066 0.83 +0.3
4,567,630 - MIT1002_04066 0.83 +0.1
4,567,630 - MIT1002_04066 0.83 -0.5
4,567,630 - MIT1002_04066 0.83 -0.6
4,567,630 - MIT1002_04066 0.83 +0.3
4,567,630 - MIT1002_04066 0.83 +3.0
4,567,630 - MIT1002_04066 0.83 +0.5
4,567,678 + +0.5
4,567,686 - -0.0
4,567,736 + +0.7
4,567,739 - +0.8
4,567,745 + -1.8
4,567,767 + +0.4
4,567,784 + +0.0
4,567,814 - -0.3
4,567,912 - +0.4
4,567,912 - -0.7
4,567,940 - MIT1002_04067 0.11 -1.0
4,567,942 - MIT1002_04067 0.11 +1.5
4,567,961 + MIT1002_04067 0.15 -0.1
4,567,961 + MIT1002_04067 0.15 +2.1
4,567,964 - MIT1002_04067 0.16 -1.2
4,567,969 - MIT1002_04067 0.17 +0.1
4,568,001 - MIT1002_04067 0.24 -1.1
4,568,025 + MIT1002_04067 0.29 -0.4
4,568,033 - MIT1002_04067 0.31 +4.9
4,568,056 + MIT1002_04067 0.36 +1.7
4,568,057 + MIT1002_04067 0.36 +2.4
4,568,071 - MIT1002_04067 0.39 +0.6
4,568,078 + MIT1002_04067 0.41 -1.7
4,568,086 - MIT1002_04067 0.42 -0.3
4,568,086 - MIT1002_04067 0.42 +2.7
4,568,086 - MIT1002_04067 0.42 -0.1
4,568,115 + MIT1002_04067 0.49 -1.6
4,568,136 + MIT1002_04067 0.53 +0.5
4,568,152 - MIT1002_04067 0.57 +2.4
4,568,245 + MIT1002_04067 0.77 -0.5
4,568,290 + MIT1002_04067 0.87 +1.3
4,568,290 + MIT1002_04067 0.87 -0.8
4,568,290 + MIT1002_04067 0.87 +0.7
4,568,298 - MIT1002_04067 0.88 +0.8
4,568,298 - MIT1002_04067 0.88 -0.2
4,568,298 - MIT1002_04067 0.88 -2.4
4,568,298 - MIT1002_04067 0.88 +1.1
4,568,310 - -1.1
4,568,424 + MIT1002_04068 0.26 -2.3
4,568,464 + MIT1002_04068 0.48 -0.4
4,568,464 + MIT1002_04068 0.48 -0.2
4,568,464 - MIT1002_04068 0.48 +2.2
4,568,467 - MIT1002_04068 0.50 +0.1
4,568,472 - MIT1002_04068 0.53 -0.6
4,568,489 + MIT1002_04068 0.62 -1.3
4,568,861 - -0.6
4,569,083 - MIT1002_04070 0.40 -0.6

Or see this region's nucleotide sequence