Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04034

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6
4,519,343	+		MIT1002_04032	0.79	-2.5
4,519,351	-		MIT1002_04032	0.80	-2.6
4,519,476	-				-2.7
4,519,540	+				+0.2
4,519,547	+				-2.1
4,519,548	-				+0.4
4,519,548	-				-3.7
4,519,588	-				+3.1
4,519,596	+				-0.4
4,519,616	-		MIT1002_04033	0.10	-0.5
4,519,638	-		MIT1002_04033	0.14	-0.6
4,519,638	-		MIT1002_04033	0.14	+0.2
4,519,688	+		MIT1002_04033	0.23	-1.3
4,519,696	-		MIT1002_04033	0.24	-1.0
4,519,703	+		MIT1002_04033	0.25	-3.2
4,519,715	+		MIT1002_04033	0.27	-1.1
4,519,768	-		MIT1002_04033	0.36	-4.2
4,519,779	-		MIT1002_04033	0.38	-3.3
4,519,784	-		MIT1002_04033	0.39	-0.8
4,519,815	-		MIT1002_04033	0.44	-2.3
4,519,876	-		MIT1002_04033	0.55	-2.3
4,519,884	-		MIT1002_04033	0.56	-0.8
4,519,968	+		MIT1002_04033	0.70	-1.9
4,519,972	+		MIT1002_04033	0.71	-1.2
4,520,095	+				+0.1
4,520,140	+				-1.5
4,520,151	-				-1.9
4,520,168	+				-3.8
4,520,176	-				-2.5
4,520,278	-				-0.3
4,520,301	-				-0.1
4,520,328	-				+0.2
4,520,464	+		MIT1002_04034	0.11	-1.1
4,520,477	-		MIT1002_04034	0.11	-0.3
4,520,505	-		MIT1002_04034	0.13	-1.5
4,520,505	-		MIT1002_04034	0.13	-0.5
4,520,521	-		MIT1002_04034	0.14	+2.7
4,520,550	+		MIT1002_04034	0.16	-3.0
4,520,555	+		MIT1002_04034	0.16	+0.2
4,520,615	+		MIT1002_04034	0.20	-1.4
4,520,650	+		MIT1002_04034	0.22	-1.2
4,520,656	-		MIT1002_04034	0.22	-2.5
4,520,656	-		MIT1002_04034	0.22	-1.6
4,520,699	-		MIT1002_04034	0.25	-2.8
4,520,758	-		MIT1002_04034	0.29	-0.4
4,520,758	-		MIT1002_04034	0.29	+0.7
4,520,772	-		MIT1002_04034	0.30	-2.0
4,520,781	+		MIT1002_04034	0.30	-1.1
4,520,802	-		MIT1002_04034	0.31	-2.9
4,520,877	+		MIT1002_04034	0.36	-2.0
4,520,877	-		MIT1002_04034	0.36	-3.7
4,520,897	+		MIT1002_04034	0.37	-1.8
4,520,967	-		MIT1002_04034	0.42	-1.7
4,520,969	+		MIT1002_04034	0.42	-0.6
4,520,976	+		MIT1002_04034	0.42	+0.4
4,520,976	+		MIT1002_04034	0.42	-1.3
4,520,984	-		MIT1002_04034	0.43	-0.3
4,520,984	-		MIT1002_04034	0.43	-1.5
4,520,984	-		MIT1002_04034	0.43	-3.3
4,520,984	-		MIT1002_04034	0.43	-1.4
4,520,984	-		MIT1002_04034	0.43	-2.1
4,520,989	-		MIT1002_04034	0.43	+0.9
4,520,989	-		MIT1002_04034	0.43	+1.2
4,520,989	-		MIT1002_04034	0.43	-0.8
4,520,994	-		MIT1002_04034	0.43	-1.4
4,521,007	+		MIT1002_04034	0.44	-2.5
4,521,023	-		MIT1002_04034	0.45	-4.1
4,521,113	-		MIT1002_04034	0.51	-1.8
4,521,154	+		MIT1002_04034	0.53	+0.0
4,521,275	+		MIT1002_04034	0.60	-1.5
4,521,301	+		MIT1002_04034	0.62	-3.2
4,521,309	-		MIT1002_04034	0.63	-1.1
4,521,309	-		MIT1002_04034	0.63	+1.3
4,521,321	+		MIT1002_04034	0.63	+0.4
4,521,321	+		MIT1002_04034	0.63	-1.8
4,521,371	+		MIT1002_04034	0.66	-1.8
4,521,384	-		MIT1002_04034	0.67	-4.0
4,521,544	+		MIT1002_04034	0.77	-3.7
4,521,544	+		MIT1002_04034	0.77	-0.8
4,521,645	+		MIT1002_04034	0.83	+0.9
4,521,650	-		MIT1002_04034	0.83	-1.9
4,521,695	+		MIT1002_04034	0.86	-2.1
4,521,698	-		MIT1002_04034	0.86	-1.1
4,521,703	-		MIT1002_04034	0.87	-0.6
4,521,703	-		MIT1002_04034	0.87	-0.5
4,521,703	-		MIT1002_04034	0.87	-2.0
4,521,708	-		MIT1002_04034	0.87	-3.5
4,521,713	-		MIT1002_04034	0.87	-0.5
4,521,761	+				-1.3
4,521,778	+				-1.2
4,521,778	+				-0.4
4,521,784	-				-0.4
4,521,793	-				-0.3
4,521,813	+				+0.4
4,521,876	+				-0.6
4,521,878	+				-0.3
4,521,884	-				-2.0
4,521,884	-				-2.0
4,521,955	-				-1.6
4,521,957	-				-3.2
4,522,156	+		MIT1002_04035	0.20	-2.1
4,522,164	-		MIT1002_04035	0.20	-1.4
4,522,190	+		MIT1002_04035	0.23	-1.8
4,522,358	+		MIT1002_04035	0.37	-2.1
4,522,371	-		MIT1002_04035	0.38	-0.4
4,522,391	-		MIT1002_04035	0.40	-2.9
4,522,400	+		MIT1002_04035	0.41	-1.2
4,522,402	+		MIT1002_04035	0.41	-1.9
4,522,416	+		MIT1002_04035	0.42	-4.0
4,522,416	+		MIT1002_04035	0.42	+0.6
4,522,424	-		MIT1002_04035	0.43	-0.8
4,522,424	-		MIT1002_04035	0.43	-2.7
4,522,477	+		MIT1002_04035	0.47	-1.1
4,522,477	+		MIT1002_04035	0.47	-2.2
4,522,487	+		MIT1002_04035	0.48	+0.2
4,522,497	+		MIT1002_04035	0.49	-0.8
4,522,514	-		MIT1002_04035	0.50	-2.8
4,522,573	-		MIT1002_04035	0.55	-2.0
4,522,642	-		MIT1002_04035	0.61	-1.7
4,522,699	-		MIT1002_04035	0.66	-2.0
4,522,699	-		MIT1002_04035	0.66	+0.7
4,522,899	-		MIT1002_04035	0.83	-1.7