Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03992

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_03990 and MIT1002_03991 are separated by 26 nucleotidesMIT1002_03991 and MIT1002_03992 are separated by 71 nucleotidesMIT1002_03992 and MIT1002_03993 are separated by 3 nucleotidesMIT1002_03993 and MIT1002_03994 are separated by 127 nucleotides MIT1002_03990: MIT1002_03990 - Non-canonical purine NTP phosphatase, at 4,477,785 to 4,478,330 _03990 MIT1002_03991: MIT1002_03991 - GMP/IMP nucleotidase YrfG, at 4,478,357 to 4,479,070 _03991 MIT1002_03992: MIT1002_03992 - ADP compounds hydrolase NudE, at 4,479,142 to 4,479,705 _03992 MIT1002_03993: MIT1002_03993 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 4,479,709 to 4,480,554 _03993 MIT1002_03994: MIT1002_03994 - hypothetical protein, at 4,480,682 to 4,481,266 _03994 Position (kb) 4479 4480Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4478.198 kb on + strand, within MIT1002_03990at 4478.211 kb on + strand, within MIT1002_03990at 4478.216 kb on + strand, within MIT1002_03990at 4478.221 kb on + strand, within MIT1002_03990at 4478.221 kb on + strand, within MIT1002_03990at 4478.221 kb on + strand, within MIT1002_03990at 4478.221 kb on + strand, within MIT1002_03990at 4478.221 kb on + strand, within MIT1002_03990at 4478.221 kb on + strand, within MIT1002_03990at 4478.221 kb on + strand, within MIT1002_03990at 4478.221 kb on + strand, within MIT1002_03990at 4478.221 kb on + strand, within MIT1002_03990at 4478.221 kb on + strand, within MIT1002_03990at 4478.221 kb on + strand, within MIT1002_03990at 4478.221 kb on + strand, within MIT1002_03990at 4478.221 kb on + strand, within MIT1002_03990at 4478.221 kb on + strand, within MIT1002_03990at 4478.221 kb on + strand, within MIT1002_03990at 4478.229 kb on - strand, within MIT1002_03990at 4478.229 kb on - strand, within MIT1002_03990at 4478.229 kb on - strand, within MIT1002_03990at 4478.229 kb on - strand, within MIT1002_03990at 4478.229 kb on - strand, within MIT1002_03990at 4478.229 kb on - strand, within MIT1002_03990at 4478.229 kb on - strand, within MIT1002_03990at 4478.229 kb on - strand, within MIT1002_03990at 4478.229 kb on - strand, within MIT1002_03990at 4478.229 kb on - strand, within MIT1002_03990at 4478.229 kb on - strand, within MIT1002_03990at 4478.229 kb on - strand, within MIT1002_03990at 4478.229 kb on - strand, within MIT1002_03990at 4478.229 kb on - strand, within MIT1002_03990at 4478.257 kb on - strand, within MIT1002_03990at 4478.271 kb on - strand, within MIT1002_03990at 4478.286 kb on - strandat 4478.379 kb on + strandat 4478.386 kb on - strandat 4478.433 kb on + strand, within MIT1002_03991at 4478.433 kb on + strand, within MIT1002_03991at 4478.469 kb on + strand, within MIT1002_03991at 4478.513 kb on - strand, within MIT1002_03991at 4478.592 kb on - strand, within MIT1002_03991at 4478.651 kb on + strand, within MIT1002_03991at 4478.651 kb on + strand, within MIT1002_03991at 4478.679 kb on - strand, within MIT1002_03991at 4478.697 kb on + strand, within MIT1002_03991at 4478.979 kb on + strand, within MIT1002_03991at 4478.987 kb on - strand, within MIT1002_03991at 4479.015 kb on + strandat 4479.034 kb on - strandat 4479.088 kb on + strandat 4479.211 kb on + strand, within MIT1002_03992at 4479.213 kb on + strand, within MIT1002_03992at 4479.213 kb on + strand, within MIT1002_03992at 4479.213 kb on + strand, within MIT1002_03992at 4479.221 kb on - strand, within MIT1002_03992at 4479.221 kb on - strand, within MIT1002_03992at 4479.227 kb on + strand, within MIT1002_03992at 4479.234 kb on - strand, within MIT1002_03992at 4479.235 kb on - strand, within MIT1002_03992at 4479.272 kb on - strand, within MIT1002_03992at 4479.334 kb on + strand, within MIT1002_03992at 4479.373 kb on + strand, within MIT1002_03992at 4479.494 kb on + strand, within MIT1002_03992at 4479.497 kb on - strand, within MIT1002_03992at 4479.532 kb on + strand, within MIT1002_03992at 4479.546 kb on + strand, within MIT1002_03992at 4479.577 kb on + strand, within MIT1002_03992at 4479.583 kb on - strand, within MIT1002_03992at 4479.584 kb on - strand, within MIT1002_03992at 4479.657 kb on + strandat 4479.659 kb on + strandat 4479.665 kb on - strandat 4479.724 kb on + strandat 4479.725 kb on + strandat 4479.735 kb on + strandat 4479.794 kb on + strand, within MIT1002_03993at 4479.804 kb on + strand, within MIT1002_03993at 4479.835 kb on + strand, within MIT1002_03993at 4479.835 kb on + strand, within MIT1002_03993at 4479.843 kb on - strand, within MIT1002_03993at 4479.843 kb on - strand, within MIT1002_03993at 4479.938 kb on + strand, within MIT1002_03993at 4479.938 kb on + strand, within MIT1002_03993at 4479.938 kb on + strand, within MIT1002_03993at 4479.938 kb on + strand, within MIT1002_03993at 4479.946 kb on - strand, within MIT1002_03993at 4479.946 kb on - strand, within MIT1002_03993at 4479.946 kb on - strand, within MIT1002_03993at 4479.946 kb on - strand, within MIT1002_03993at 4479.966 kb on + strand, within MIT1002_03993at 4479.979 kb on - strand, within MIT1002_03993at 4479.984 kb on + strand, within MIT1002_03993at 4480.042 kb on - strand, within MIT1002_03993at 4480.172 kb on + strand, within MIT1002_03993at 4480.208 kb on + strand, within MIT1002_03993at 4480.297 kb on + strand, within MIT1002_03993at 4480.373 kb on - strand, within MIT1002_03993at 4480.410 kb on - strand, within MIT1002_03993at 4480.410 kb on - strand, within MIT1002_03993at 4480.432 kb on + strand, within MIT1002_03993at 4480.506 kb on + strandat 4480.519 kb on - strandat 4480.530 kb on - strandat 4480.580 kb on + strandat 4480.580 kb on + strandat 4480.580 kb on + strandat 4480.580 kb on + strandat 4480.580 kb on + strandat 4480.588 kb on - strandat 4480.590 kb on + strandat 4480.590 kb on + strandat 4480.598 kb on - strandat 4480.679 kb on + strandat 4480.687 kb on - strandat 4480.689 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6
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4,478,198 + MIT1002_03990 0.76 -1.4
4,478,211 + MIT1002_03990 0.78 -1.3
4,478,216 + MIT1002_03990 0.79 -1.5
4,478,221 + MIT1002_03990 0.80 -2.2
4,478,221 + MIT1002_03990 0.80 -1.6
4,478,221 + MIT1002_03990 0.80 +2.7
4,478,221 + MIT1002_03990 0.80 -1.5
4,478,221 + MIT1002_03990 0.80 -0.2
4,478,221 + MIT1002_03990 0.80 +0.6
4,478,221 + MIT1002_03990 0.80 -1.8
4,478,221 + MIT1002_03990 0.80 -0.7
4,478,221 + MIT1002_03990 0.80 +1.5
4,478,221 + MIT1002_03990 0.80 +0.2
4,478,221 + MIT1002_03990 0.80 +0.4
4,478,221 + MIT1002_03990 0.80 +0.2
4,478,221 + MIT1002_03990 0.80 +1.2
4,478,221 + MIT1002_03990 0.80 -1.0
4,478,221 + MIT1002_03990 0.80 +0.8
4,478,229 - MIT1002_03990 0.81 -0.5
4,478,229 - MIT1002_03990 0.81 +2.3
4,478,229 - MIT1002_03990 0.81 +1.8
4,478,229 - MIT1002_03990 0.81 -1.0
4,478,229 - MIT1002_03990 0.81 -1.2
4,478,229 - MIT1002_03990 0.81 -0.6
4,478,229 - MIT1002_03990 0.81 +1.0
4,478,229 - MIT1002_03990 0.81 +0.7
4,478,229 - MIT1002_03990 0.81 -0.6
4,478,229 - MIT1002_03990 0.81 -2.2
4,478,229 - MIT1002_03990 0.81 -0.5
4,478,229 - MIT1002_03990 0.81 -0.1
4,478,229 - MIT1002_03990 0.81 +1.9
4,478,229 - MIT1002_03990 0.81 +3.6
4,478,257 - MIT1002_03990 0.86 -1.3
4,478,271 - MIT1002_03990 0.89 -1.2
4,478,286 - +0.5
4,478,379 + +0.2
4,478,386 - -1.9
4,478,433 + MIT1002_03991 0.11 +2.4
4,478,433 + MIT1002_03991 0.11 -0.3
4,478,469 + MIT1002_03991 0.16 -0.1
4,478,513 - MIT1002_03991 0.22 -0.1
4,478,592 - MIT1002_03991 0.33 +0.7
4,478,651 + MIT1002_03991 0.41 +1.3
4,478,651 + MIT1002_03991 0.41 -0.0
4,478,679 - MIT1002_03991 0.45 -0.8
4,478,697 + MIT1002_03991 0.48 -0.7
4,478,979 + MIT1002_03991 0.87 -1.2
4,478,987 - MIT1002_03991 0.88 +1.1
4,479,015 + -1.8
4,479,034 - +0.3
4,479,088 + -1.1
4,479,211 + MIT1002_03992 0.12 +0.9
4,479,213 + MIT1002_03992 0.13 +0.7
4,479,213 + MIT1002_03992 0.13 -0.3
4,479,213 + MIT1002_03992 0.13 +0.4
4,479,221 - MIT1002_03992 0.14 -0.1
4,479,221 - MIT1002_03992 0.14 -0.8
4,479,227 + MIT1002_03992 0.15 -1.5
4,479,234 - MIT1002_03992 0.16 +0.4
4,479,235 - MIT1002_03992 0.16 +0.1
4,479,272 - MIT1002_03992 0.23 -0.4
4,479,334 + MIT1002_03992 0.34 +0.1
4,479,373 + MIT1002_03992 0.41 +0.7
4,479,494 + MIT1002_03992 0.62 +0.6
4,479,497 - MIT1002_03992 0.63 -2.4
4,479,532 + MIT1002_03992 0.69 -1.5
4,479,546 + MIT1002_03992 0.72 -1.6
4,479,577 + MIT1002_03992 0.77 +0.0
4,479,583 - MIT1002_03992 0.78 +0.4
4,479,584 - MIT1002_03992 0.78 +0.1
4,479,657 + -0.6
4,479,659 + +1.0
4,479,665 - +0.4
4,479,724 + +0.3
4,479,725 + +0.2
4,479,735 + +0.3
4,479,794 + MIT1002_03993 0.10 +2.7
4,479,804 + MIT1002_03993 0.11 +0.7
4,479,835 + MIT1002_03993 0.15 -2.3
4,479,835 + MIT1002_03993 0.15 +0.6
4,479,843 - MIT1002_03993 0.16 +0.2
4,479,843 - MIT1002_03993 0.16 +1.0
4,479,938 + MIT1002_03993 0.27 -1.2
4,479,938 + MIT1002_03993 0.27 +1.6
4,479,938 + MIT1002_03993 0.27 +1.4
4,479,938 + MIT1002_03993 0.27 +0.2
4,479,946 - MIT1002_03993 0.28 -0.5
4,479,946 - MIT1002_03993 0.28 +1.3
4,479,946 - MIT1002_03993 0.28 +0.5
4,479,946 - MIT1002_03993 0.28 -1.5
4,479,966 + MIT1002_03993 0.30 -0.5
4,479,979 - MIT1002_03993 0.32 -0.6
4,479,984 + MIT1002_03993 0.33 -0.7
4,480,042 - MIT1002_03993 0.39 +0.2
4,480,172 + MIT1002_03993 0.55 +2.0
4,480,208 + MIT1002_03993 0.59 +0.3
4,480,297 + MIT1002_03993 0.70 +1.7
4,480,373 - MIT1002_03993 0.78 +0.9
4,480,410 - MIT1002_03993 0.83 +0.6
4,480,410 - MIT1002_03993 0.83 +0.0
4,480,432 + MIT1002_03993 0.85 +0.5
4,480,506 + +0.8
4,480,519 - +0.4
4,480,530 - +1.2
4,480,580 + +0.9
4,480,580 + -1.0
4,480,580 + +1.3
4,480,580 + +1.7
4,480,580 + +1.2
4,480,588 - +0.4
4,480,590 + -0.4
4,480,590 + +0.6
4,480,598 - +0.2
4,480,679 + -0.6
4,480,687 - +0.7
4,480,689 + -0.5

Or see this region's nucleotide sequence