Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03886

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_03885 and MIT1002_03886 are separated by 185 nucleotidesMIT1002_03886 and MIT1002_03887 are separated by 317 nucleotidesMIT1002_03887 and MIT1002_03888 are separated by 194 nucleotides MIT1002_03885: MIT1002_03885 - NADH dehydrogenase, at 4,348,996 to 4,350,288 _03885 MIT1002_03886: MIT1002_03886 - Outer membrane cobalamin translocator, at 4,350,474 to 4,352,543 _03886 MIT1002_03887: MIT1002_03887 - hypothetical protein, at 4,352,861 to 4,353,304 _03887 MIT1002_03888: MIT1002_03888 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, at 4,353,499 to 4,354,509 _03888 Position (kb) 4350 4351 4352 4353Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4349.499 kb on - strand, within MIT1002_03885at 4349.560 kb on + strand, within MIT1002_03885at 4349.585 kb on + strand, within MIT1002_03885at 4349.684 kb on + strand, within MIT1002_03885at 4349.756 kb on - strand, within MIT1002_03885at 4349.756 kb on - strand, within MIT1002_03885at 4349.805 kb on - strand, within MIT1002_03885at 4349.855 kb on + strand, within MIT1002_03885at 4349.873 kb on - strand, within MIT1002_03885at 4349.892 kb on + strand, within MIT1002_03885at 4349.926 kb on - strand, within MIT1002_03885at 4349.975 kb on + strand, within MIT1002_03885at 4350.031 kb on - strand, within MIT1002_03885at 4350.099 kb on + strand, within MIT1002_03885at 4350.099 kb on + strand, within MIT1002_03885at 4350.117 kb on - strand, within MIT1002_03885at 4350.290 kb on + strandat 4350.322 kb on + strandat 4350.322 kb on + strandat 4350.322 kb on + strandat 4350.346 kb on - strandat 4350.346 kb on - strandat 4350.346 kb on - strandat 4350.346 kb on - strandat 4350.363 kb on - strandat 4350.380 kb on + strandat 4350.383 kb on - strandat 4350.532 kb on - strandat 4350.573 kb on - strandat 4350.646 kb on + strandat 4350.651 kb on + strandat 4350.651 kb on + strandat 4350.651 kb on + strandat 4350.659 kb on + strandat 4350.659 kb on - strandat 4350.659 kb on - strandat 4350.723 kb on + strand, within MIT1002_03886at 4350.743 kb on + strand, within MIT1002_03886at 4350.784 kb on + strand, within MIT1002_03886at 4350.784 kb on + strand, within MIT1002_03886at 4350.786 kb on + strand, within MIT1002_03886at 4350.817 kb on + strand, within MIT1002_03886at 4350.825 kb on - strand, within MIT1002_03886at 4350.825 kb on - strand, within MIT1002_03886at 4350.829 kb on - strand, within MIT1002_03886at 4350.885 kb on + strand, within MIT1002_03886at 4350.886 kb on - strand, within MIT1002_03886at 4350.886 kb on - strand, within MIT1002_03886at 4350.904 kb on - strand, within MIT1002_03886at 4350.909 kb on - strand, within MIT1002_03886at 4350.917 kb on - strand, within MIT1002_03886at 4350.918 kb on + strand, within MIT1002_03886at 4350.924 kb on - strand, within MIT1002_03886at 4350.934 kb on - strand, within MIT1002_03886at 4350.998 kb on + strand, within MIT1002_03886at 4351.012 kb on - strand, within MIT1002_03886at 4351.083 kb on + strand, within MIT1002_03886at 4351.088 kb on + strand, within MIT1002_03886at 4351.090 kb on - strand, within MIT1002_03886at 4351.090 kb on - strand, within MIT1002_03886at 4351.112 kb on - strand, within MIT1002_03886at 4351.116 kb on + strand, within MIT1002_03886at 4351.138 kb on + strand, within MIT1002_03886at 4351.155 kb on - strand, within MIT1002_03886at 4351.169 kb on - strand, within MIT1002_03886at 4351.206 kb on - strand, within MIT1002_03886at 4351.242 kb on - strand, within MIT1002_03886at 4351.253 kb on + strand, within MIT1002_03886at 4351.428 kb on - strand, within MIT1002_03886at 4351.445 kb on - strand, within MIT1002_03886at 4351.490 kb on + strand, within MIT1002_03886at 4351.563 kb on - strand, within MIT1002_03886at 4351.608 kb on + strand, within MIT1002_03886at 4351.664 kb on + strand, within MIT1002_03886at 4351.676 kb on - strand, within MIT1002_03886at 4351.684 kb on - strand, within MIT1002_03886at 4351.684 kb on - strand, within MIT1002_03886at 4351.684 kb on - strand, within MIT1002_03886at 4351.726 kb on - strand, within MIT1002_03886at 4351.752 kb on - strand, within MIT1002_03886at 4351.799 kb on + strand, within MIT1002_03886at 4351.846 kb on - strand, within MIT1002_03886at 4351.846 kb on - strand, within MIT1002_03886at 4351.846 kb on - strand, within MIT1002_03886at 4351.876 kb on + strand, within MIT1002_03886at 4351.879 kb on - strand, within MIT1002_03886at 4351.879 kb on - strand, within MIT1002_03886at 4351.879 kb on - strand, within MIT1002_03886at 4351.904 kb on + strand, within MIT1002_03886at 4351.916 kb on + strand, within MIT1002_03886at 4351.916 kb on + strand, within MIT1002_03886at 4351.922 kb on - strand, within MIT1002_03886at 4351.922 kb on - strand, within MIT1002_03886at 4351.973 kb on + strand, within MIT1002_03886at 4351.976 kb on - strand, within MIT1002_03886at 4351.990 kb on + strand, within MIT1002_03886at 4351.998 kb on - strand, within MIT1002_03886at 4351.998 kb on - strand, within MIT1002_03886at 4352.049 kb on + strand, within MIT1002_03886at 4352.049 kb on + strand, within MIT1002_03886at 4352.057 kb on - strand, within MIT1002_03886at 4352.057 kb on - strand, within MIT1002_03886at 4352.060 kb on + strand, within MIT1002_03886at 4352.067 kb on - strand, within MIT1002_03886at 4352.103 kb on - strand, within MIT1002_03886at 4352.164 kb on + strand, within MIT1002_03886at 4352.164 kb on + strand, within MIT1002_03886at 4352.164 kb on + strand, within MIT1002_03886at 4352.215 kb on - strand, within MIT1002_03886at 4352.217 kb on + strand, within MIT1002_03886at 4352.256 kb on + strand, within MIT1002_03886at 4352.256 kb on + strand, within MIT1002_03886at 4352.281 kb on + strand, within MIT1002_03886at 4352.281 kb on + strand, within MIT1002_03886at 4352.289 kb on - strand, within MIT1002_03886at 4352.301 kb on + strand, within MIT1002_03886at 4352.315 kb on - strand, within MIT1002_03886at 4352.330 kb on + strand, within MIT1002_03886at 4352.351 kb on + strandat 4352.398 kb on + strandat 4352.416 kb on + strandat 4352.539 kb on - strandat 4352.580 kb on + strandat 4352.616 kb on + strandat 4352.677 kb on - strandat 4352.680 kb on + strandat 4352.680 kb on + strandat 4352.688 kb on - strandat 4352.688 kb on - strandat 4352.688 kb on - strandat 4352.725 kb on - strandat 4352.766 kb on + strandat 4352.783 kb on + strandat 4352.791 kb on - strandat 4352.811 kb on - strandat 4352.813 kb on - strandat 4352.847 kb on + strandat 4352.858 kb on + strandat 4352.866 kb on - strandat 4352.866 kb on - strandat 4352.866 kb on - strandat 4352.868 kb on + strandat 4352.916 kb on + strand, within MIT1002_03887at 4352.949 kb on + strand, within MIT1002_03887at 4352.949 kb on + strand, within MIT1002_03887at 4352.951 kb on - strand, within MIT1002_03887at 4352.958 kb on + strand, within MIT1002_03887at 4352.966 kb on - strand, within MIT1002_03887at 4352.985 kb on + strand, within MIT1002_03887at 4352.985 kb on + strand, within MIT1002_03887at 4352.985 kb on + strand, within MIT1002_03887at 4352.985 kb on + strand, within MIT1002_03887at 4352.985 kb on + strand, within MIT1002_03887at 4352.985 kb on + strand, within MIT1002_03887at 4352.985 kb on + strand, within MIT1002_03887at 4352.985 kb on + strand, within MIT1002_03887at 4352.985 kb on + strand, within MIT1002_03887at 4352.985 kb on + strand, within MIT1002_03887at 4352.985 kb on + strand, within MIT1002_03887at 4352.985 kb on + strand, within MIT1002_03887at 4352.985 kb on + strand, within MIT1002_03887at 4352.993 kb on - strand, within MIT1002_03887at 4352.993 kb on - strand, within MIT1002_03887at 4352.993 kb on - strand, within MIT1002_03887at 4352.993 kb on - strand, within MIT1002_03887at 4352.993 kb on - strand, within MIT1002_03887at 4353.015 kb on - strand, within MIT1002_03887at 4353.037 kb on - strand, within MIT1002_03887at 4353.075 kb on + strand, within MIT1002_03887at 4353.075 kb on + strand, within MIT1002_03887at 4353.075 kb on + strand, within MIT1002_03887at 4353.078 kb on - strand, within MIT1002_03887at 4353.119 kb on + strand, within MIT1002_03887at 4353.124 kb on - strand, within MIT1002_03887at 4353.127 kb on + strand, within MIT1002_03887at 4353.127 kb on + strand, within MIT1002_03887at 4353.127 kb on + strand, within MIT1002_03887at 4353.127 kb on + strand, within MIT1002_03887at 4353.128 kb on - strand, within MIT1002_03887at 4353.138 kb on - strand, within MIT1002_03887at 4353.276 kb on + strandat 4353.294 kb on - strandat 4353.376 kb on - strandat 4353.391 kb on - strandat 4353.393 kb on + strandat 4353.482 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6
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4,349,499 - MIT1002_03885 0.39 -3.5
4,349,560 + MIT1002_03885 0.44 -0.1
4,349,585 + MIT1002_03885 0.46 -3.3
4,349,684 + MIT1002_03885 0.53 -3.7
4,349,756 - MIT1002_03885 0.59 -0.1
4,349,756 - MIT1002_03885 0.59 -1.1
4,349,805 - MIT1002_03885 0.63 -2.6
4,349,855 + MIT1002_03885 0.66 -0.1
4,349,873 - MIT1002_03885 0.68 -1.4
4,349,892 + MIT1002_03885 0.69 -2.3
4,349,926 - MIT1002_03885 0.72 -4.4
4,349,975 + MIT1002_03885 0.76 -4.1
4,350,031 - MIT1002_03885 0.80 -3.1
4,350,099 + MIT1002_03885 0.85 -3.7
4,350,099 + MIT1002_03885 0.85 -1.3
4,350,117 - MIT1002_03885 0.87 +0.4
4,350,290 + -1.3
4,350,322 + -4.0
4,350,322 + -3.9
4,350,322 + -1.8
4,350,346 - -1.4
4,350,346 - -1.9
4,350,346 - -1.2
4,350,346 - -2.8
4,350,363 - -0.5
4,350,380 + -3.9
4,350,383 - -3.2
4,350,532 - +1.9
4,350,573 - -0.5
4,350,646 + +0.6
4,350,651 + -1.1
4,350,651 + +2.1
4,350,651 + +1.3
4,350,659 + +0.1
4,350,659 - -0.5
4,350,659 - -0.4
4,350,723 + MIT1002_03886 0.12 +0.7
4,350,743 + MIT1002_03886 0.13 -1.8
4,350,784 + MIT1002_03886 0.15 +0.1
4,350,784 + MIT1002_03886 0.15 +2.3
4,350,786 + MIT1002_03886 0.15 -0.9
4,350,817 + MIT1002_03886 0.17 -0.2
4,350,825 - MIT1002_03886 0.17 -0.8
4,350,825 - MIT1002_03886 0.17 +1.1
4,350,829 - MIT1002_03886 0.17 +0.2
4,350,885 + MIT1002_03886 0.20 -0.2
4,350,886 - MIT1002_03886 0.20 +1.1
4,350,886 - MIT1002_03886 0.20 +0.1
4,350,904 - MIT1002_03886 0.21 +1.0
4,350,909 - MIT1002_03886 0.21 -1.2
4,350,917 - MIT1002_03886 0.21 +0.4
4,350,918 + MIT1002_03886 0.21 -0.7
4,350,924 - MIT1002_03886 0.22 +0.0
4,350,934 - MIT1002_03886 0.22 -0.5
4,350,998 + MIT1002_03886 0.25 -0.2
4,351,012 - MIT1002_03886 0.26 -1.1
4,351,083 + MIT1002_03886 0.29 -1.7
4,351,088 + MIT1002_03886 0.30 -1.9
4,351,090 - MIT1002_03886 0.30 +0.7
4,351,090 - MIT1002_03886 0.30 +1.5
4,351,112 - MIT1002_03886 0.31 -1.0
4,351,116 + MIT1002_03886 0.31 +1.1
4,351,138 + MIT1002_03886 0.32 -0.7
4,351,155 - MIT1002_03886 0.33 -1.3
4,351,169 - MIT1002_03886 0.34 -2.1
4,351,206 - MIT1002_03886 0.35 -1.7
4,351,242 - MIT1002_03886 0.37 +1.9
4,351,253 + MIT1002_03886 0.38 +0.3
4,351,428 - MIT1002_03886 0.46 -1.4
4,351,445 - MIT1002_03886 0.47 +1.0
4,351,490 + MIT1002_03886 0.49 +0.7
4,351,563 - MIT1002_03886 0.53 -0.1
4,351,608 + MIT1002_03886 0.55 -0.0
4,351,664 + MIT1002_03886 0.57 -0.5
4,351,676 - MIT1002_03886 0.58 -0.0
4,351,684 - MIT1002_03886 0.58 +0.5
4,351,684 - MIT1002_03886 0.58 +0.3
4,351,684 - MIT1002_03886 0.58 -0.4
4,351,726 - MIT1002_03886 0.60 +2.6
4,351,752 - MIT1002_03886 0.62 +1.5
4,351,799 + MIT1002_03886 0.64 -0.1
4,351,846 - MIT1002_03886 0.66 +0.4
4,351,846 - MIT1002_03886 0.66 +1.1
4,351,846 - MIT1002_03886 0.66 +0.7
4,351,876 + MIT1002_03886 0.68 -1.4
4,351,879 - MIT1002_03886 0.68 -0.3
4,351,879 - MIT1002_03886 0.68 +1.3
4,351,879 - MIT1002_03886 0.68 -0.5
4,351,904 + MIT1002_03886 0.69 -0.2
4,351,916 + MIT1002_03886 0.70 +0.4
4,351,916 + MIT1002_03886 0.70 -1.3
4,351,922 - MIT1002_03886 0.70 -0.5
4,351,922 - MIT1002_03886 0.70 -0.7
4,351,973 + MIT1002_03886 0.72 +0.3
4,351,976 - MIT1002_03886 0.73 -1.7
4,351,990 + MIT1002_03886 0.73 -0.5
4,351,998 - MIT1002_03886 0.74 -1.8
4,351,998 - MIT1002_03886 0.74 -1.9
4,352,049 + MIT1002_03886 0.76 -1.4
4,352,049 + MIT1002_03886 0.76 +1.1
4,352,057 - MIT1002_03886 0.76 +0.6
4,352,057 - MIT1002_03886 0.76 -0.6
4,352,060 + MIT1002_03886 0.77 +0.9
4,352,067 - MIT1002_03886 0.77 +0.7
4,352,103 - MIT1002_03886 0.79 +0.9
4,352,164 + MIT1002_03886 0.82 -0.2
4,352,164 + MIT1002_03886 0.82 -1.4
4,352,164 + MIT1002_03886 0.82 -1.2
4,352,215 - MIT1002_03886 0.84 +0.6
4,352,217 + MIT1002_03886 0.84 +0.4
4,352,256 + MIT1002_03886 0.86 +0.5
4,352,256 + MIT1002_03886 0.86 +0.8
4,352,281 + MIT1002_03886 0.87 -0.0
4,352,281 + MIT1002_03886 0.87 +3.0
4,352,289 - MIT1002_03886 0.88 +1.5
4,352,301 + MIT1002_03886 0.88 -0.1
4,352,315 - MIT1002_03886 0.89 -0.5
4,352,330 + MIT1002_03886 0.90 -2.5
4,352,351 + -1.2
4,352,398 + -2.6
4,352,416 + -1.4
4,352,539 - -2.1
4,352,580 + +0.3
4,352,616 + -0.5
4,352,677 - +0.2
4,352,680 + +0.2
4,352,680 + +1.1
4,352,688 - +0.6
4,352,688 - -1.4
4,352,688 - +2.1
4,352,725 - -1.6
4,352,766 + +0.1
4,352,783 + -1.9
4,352,791 - -0.6
4,352,811 - -0.1
4,352,813 - -2.1
4,352,847 + +0.3
4,352,858 + -0.6
4,352,866 - -0.3
4,352,866 - -1.1
4,352,866 - +0.1
4,352,868 + -1.0
4,352,916 + MIT1002_03887 0.12 +1.0
4,352,949 + MIT1002_03887 0.20 -1.4
4,352,949 + MIT1002_03887 0.20 +1.6
4,352,951 - MIT1002_03887 0.20 -2.0
4,352,958 + MIT1002_03887 0.22 -0.3
4,352,966 - MIT1002_03887 0.24 +0.6
4,352,985 + MIT1002_03887 0.28 -0.4
4,352,985 + MIT1002_03887 0.28 +0.1
4,352,985 + MIT1002_03887 0.28 -0.0
4,352,985 + MIT1002_03887 0.28 -2.3
4,352,985 + MIT1002_03887 0.28 +1.5
4,352,985 + MIT1002_03887 0.28 +1.1
4,352,985 + MIT1002_03887 0.28 -0.4
4,352,985 + MIT1002_03887 0.28 +1.6
4,352,985 + MIT1002_03887 0.28 +0.9
4,352,985 + MIT1002_03887 0.28 -0.2
4,352,985 + MIT1002_03887 0.28 -0.1
4,352,985 + MIT1002_03887 0.28 +0.8
4,352,985 + MIT1002_03887 0.28 +1.1
4,352,993 - MIT1002_03887 0.30 -0.5
4,352,993 - MIT1002_03887 0.30 -0.5
4,352,993 - MIT1002_03887 0.30 +0.6
4,352,993 - MIT1002_03887 0.30 +0.4
4,352,993 - MIT1002_03887 0.30 +0.2
4,353,015 - MIT1002_03887 0.35 +1.6
4,353,037 - MIT1002_03887 0.40 +1.1
4,353,075 + MIT1002_03887 0.48 +0.9
4,353,075 + MIT1002_03887 0.48 -0.4
4,353,075 + MIT1002_03887 0.48 +1.0
4,353,078 - MIT1002_03887 0.49 +1.3
4,353,119 + MIT1002_03887 0.58 +0.4
4,353,124 - MIT1002_03887 0.59 -1.4
4,353,127 + MIT1002_03887 0.60 +0.5
4,353,127 + MIT1002_03887 0.60 +1.1
4,353,127 + MIT1002_03887 0.60 +0.4
4,353,127 + MIT1002_03887 0.60 +0.7
4,353,128 - MIT1002_03887 0.60 -2.6
4,353,138 - MIT1002_03887 0.62 +0.7
4,353,276 + +0.7
4,353,294 - -1.0
4,353,376 - +1.4
4,353,391 - -1.1
4,353,393 + +1.1
4,353,482 - +0.8

Or see this region's nucleotide sequence