Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02861

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6
3,174,714	-				+0.8
3,174,736	-				+1.0
3,174,809	+				+0.6
3,174,817	+				-0.5
3,174,817	+				-0.4
3,174,817	-				+1.6
3,174,826	-				-0.3
3,174,854	+				-0.0
3,174,881	+		MIT1002_02860	0.10	-0.3
3,174,881	+		MIT1002_02860	0.10	-2.4
3,174,947	+		MIT1002_02860	0.17	+1.1
3,174,955	-		MIT1002_02860	0.18	+0.8
3,174,970	-		MIT1002_02860	0.20	-0.2
3,174,976	-		MIT1002_02860	0.21	-0.1
3,175,052	+		MIT1002_02860	0.29	+0.3
3,175,069	+		MIT1002_02860	0.31	+0.4
3,175,079	-		MIT1002_02860	0.32	+0.8
3,175,115	+		MIT1002_02860	0.36	-0.8
3,175,128	-		MIT1002_02860	0.38	+0.3
3,175,146	+		MIT1002_02860	0.40	+0.9
3,175,156	-		MIT1002_02860	0.41	+1.1
3,175,186	-		MIT1002_02860	0.44	-2.0
3,175,189	-		MIT1002_02860	0.45	+0.3
3,175,190	+		MIT1002_02860	0.45	+0.5
3,175,190	+		MIT1002_02860	0.45	-0.1
3,175,190	+		MIT1002_02860	0.45	+1.6
3,175,190	+		MIT1002_02860	0.45	-0.6
3,175,190	+		MIT1002_02860	0.45	+1.7
3,175,190	+		MIT1002_02860	0.45	-1.3
3,175,191	+		MIT1002_02860	0.45	-0.7
3,175,198	-		MIT1002_02860	0.46	-0.2
3,175,198	-		MIT1002_02860	0.46	-2.1
3,175,198	-		MIT1002_02860	0.46	-0.0
3,175,198	-		MIT1002_02860	0.46	+0.4
3,175,198	-		MIT1002_02860	0.46	-1.0
3,175,198	-		MIT1002_02860	0.46	+0.5
3,175,199	-		MIT1002_02860	0.46	-1.4
3,175,263	-		MIT1002_02860	0.53	-2.4
3,175,287	-		MIT1002_02860	0.56	-1.0
3,175,297	-		MIT1002_02860	0.57	-3.6
3,175,297	-		MIT1002_02860	0.57	-0.5
3,175,313	+		MIT1002_02860	0.58	-1.5
3,175,319	-		MIT1002_02860	0.59	-0.7
3,175,321	-		MIT1002_02860	0.59	+1.8
3,175,321	-		MIT1002_02860	0.59	-0.3
3,175,340	-		MIT1002_02860	0.62	-1.3
3,175,409	+		MIT1002_02860	0.69	-1.1
3,175,417	-		MIT1002_02860	0.70	+0.3
3,175,439	-		MIT1002_02860	0.73	+2.3
3,175,472	-		MIT1002_02860	0.76	+0.2
3,175,489	-		MIT1002_02860	0.78	+0.2
3,175,533	+		MIT1002_02860	0.83	-2.7
3,175,533	+		MIT1002_02860	0.83	+0.3
3,175,533	+		MIT1002_02860	0.83	-0.1
3,175,559	-		MIT1002_02860	0.86	-0.1
3,175,561	-		MIT1002_02860	0.86	+1.3
3,175,583	-		MIT1002_02860	0.89	+2.2
3,175,587	+		MIT1002_02860	0.89	+2.1
3,175,595	-				-0.0
3,175,723	-				-0.7
3,175,723	-				+1.9
3,175,837	-		MIT1002_02861	0.12	-1.0
3,175,858	+		MIT1002_02861	0.14	-1.2
3,175,860	+		MIT1002_02861	0.14	-0.3
3,175,915	+		MIT1002_02861	0.18	+0.2
3,176,010	+		MIT1002_02861	0.25	-2.6
3,176,049	+		MIT1002_02861	0.28	-0.1
3,176,072	+		MIT1002_02861	0.30	+0.8
3,176,072	+		MIT1002_02861	0.30	-0.8
3,176,077	+		MIT1002_02861	0.30	-1.2
3,176,080	-		MIT1002_02861	0.31	+3.0
3,176,080	-		MIT1002_02861	0.31	-1.6
3,176,124	+		MIT1002_02861	0.34	+2.2
3,176,153	+		MIT1002_02861	0.36	-0.1
3,176,153	+		MIT1002_02861	0.36	+0.0
3,176,161	-		MIT1002_02861	0.37	-0.1
3,176,185	+		MIT1002_02861	0.39	+0.1
3,176,188	-		MIT1002_02861	0.39	-0.8
3,176,188	-		MIT1002_02861	0.39	-0.0
3,176,188	-		MIT1002_02861	0.39	-0.4
3,176,380	+		MIT1002_02861	0.53	-0.3
3,176,400	+		MIT1002_02861	0.55	+0.7
3,176,443	+		MIT1002_02861	0.58	+1.7
3,176,451	-		MIT1002_02861	0.59	-0.3
3,176,505	-		MIT1002_02861	0.63	+0.6
3,176,522	-		MIT1002_02861	0.64	+0.5
3,176,586	+		MIT1002_02861	0.69	-3.4
3,176,586	+		MIT1002_02861	0.69	+1.7
3,176,595	-		MIT1002_02861	0.70	-0.1
3,176,604	+		MIT1002_02861	0.70	+1.0
3,176,612	-		MIT1002_02861	0.71	-1.3
3,176,614	+		MIT1002_02861	0.71	-1.2
3,176,614	+		MIT1002_02861	0.71	+1.0
3,176,622	-		MIT1002_02861	0.72	-2.6
3,176,691	-		MIT1002_02861	0.77	-0.7
3,176,704	-		MIT1002_02861	0.78	+0.3
3,176,713	-		MIT1002_02861	0.78	-0.5
3,176,716	+		MIT1002_02861	0.79	-0.4
3,176,723	+		MIT1002_02861	0.79	-0.0
3,176,723	+		MIT1002_02861	0.79	-0.1
3,176,751	+		MIT1002_02861	0.81	-1.1
3,176,751	+		MIT1002_02861	0.81	-0.2
3,176,759	-		MIT1002_02861	0.82	+1.4
3,176,759	-		MIT1002_02861	0.82	-1.4
3,176,769	-		MIT1002_02861	0.83	-0.4
3,176,795	-		MIT1002_02861	0.85	+0.4
3,176,823	+		MIT1002_02861	0.87	-1.5
3,176,829	+		MIT1002_02861	0.87	+0.2
3,176,831	-		MIT1002_02861	0.87	+1.0
3,176,831	-		MIT1002_02861	0.87	+0.5
3,176,839	+		MIT1002_02861	0.88	-1.3
3,176,878	+				-0.3
3,176,886	-				-0.3
3,176,886	-				-0.3
3,176,897	+				-1.6
3,176,907	-				-1.8
3,176,922	+				-0.9
3,176,925	-				+0.8
3,176,932	+				-0.1
3,176,935	-				-1.1
3,176,940	-				+1.1
3,176,951	-				+1.7
3,176,988	-				-0.8
3,177,066	-		MIT1002_02862	0.32	-1.0
3,177,067	-		MIT1002_02862	0.33	-1.7
3,177,067	-		MIT1002_02862	0.33	-0.9
3,177,126	+		MIT1002_02862	0.62	+0.4
3,177,126	+		MIT1002_02862	0.62	-1.0
3,177,134	-		MIT1002_02862	0.66	+1.4
3,177,134	-		MIT1002_02862	0.66	+1.8
3,177,134	-		MIT1002_02862	0.66	+1.2
3,177,134	-		MIT1002_02862	0.66	-1.0
3,177,134	-		MIT1002_02862	0.66	+2.7
3,177,139	-		MIT1002_02862	0.68	+0.5
3,177,139	-		MIT1002_02862	0.68	-0.8
3,177,146	+		MIT1002_02862	0.72	+0.2
3,177,159	-		MIT1002_02862	0.78	-0.3
3,177,159	-		MIT1002_02862	0.78	-1.5
3,177,161	+		MIT1002_02862	0.79	+1.1
3,177,169	-		MIT1002_02862	0.83	-0.1
3,177,169	-		MIT1002_02862	0.83	-2.3
3,177,181	+		MIT1002_02862	0.89	+0.2
3,177,194	-				+0.1
3,177,196	+				+2.8
3,177,204	+				+1.1
3,177,204	+				-0.3
3,177,204	+				-1.4
3,177,204	+				-2.5
3,177,205	+				+1.2
3,177,205	+				+0.2
3,177,206	+				+0.7
3,177,207	-				-1.3
3,177,212	-				+0.3
3,177,212	-				+1.2
3,177,212	-				-0.0
3,177,212	-				-0.0
3,177,213	-				-0.2
3,177,222	-				+0.9
3,177,229	+				+1.3
3,177,229	+				+0.1
3,177,233	+				+0.7
3,177,262	-				-0.5
3,177,275	-				+0.4
3,177,282	+				+0.5
3,177,282	+				-0.7
3,177,282	+				-0.1
3,177,290	-				-0.1
3,177,290	-				+0.5
3,177,290	-				+0.3
3,177,290	-				-0.7
3,177,290	-				-0.7
3,177,290	-				-0.1
3,177,349	-				+0.8
3,177,376	+		MIT1002_02863	0.13	+0.9
3,177,395	-		MIT1002_02863	0.17	-1.1
3,177,457	-		MIT1002_02863	0.30	+0.7
3,177,459	+		MIT1002_02863	0.31	+0.9
3,177,459	+		MIT1002_02863	0.31	+0.4
3,177,459	+		MIT1002_02863	0.31	-0.8
3,177,459	+		MIT1002_02863	0.31	+0.3
3,177,467	-		MIT1002_02863	0.32	-1.7
3,177,467	-		MIT1002_02863	0.32	+0.0
3,177,467	-		MIT1002_02863	0.32	+0.1
3,177,467	-		MIT1002_02863	0.32	+0.5
3,177,467	-		MIT1002_02863	0.32	-0.5
3,177,467	-		MIT1002_02863	0.32	+1.1
3,177,467	-		MIT1002_02863	0.32	+0.4
3,177,467	-		MIT1002_02863	0.32	-0.1
3,177,467	-		MIT1002_02863	0.32	-1.7
3,177,467	-		MIT1002_02863	0.32	+1.4
3,177,496	+		MIT1002_02863	0.39	-0.1
3,177,526	+		MIT1002_02863	0.45	+0.3
3,177,532	+		MIT1002_02863	0.46	+1.0
3,177,534	-		MIT1002_02863	0.47	+2.4
3,177,538	+		MIT1002_02863	0.47	+0.7
3,177,538	+		MIT1002_02863	0.47	-0.5
3,177,541	-		MIT1002_02863	0.48	-0.4
3,177,541	-		MIT1002_02863	0.48	-0.1
3,177,543	+		MIT1002_02863	0.48	-0.8
3,177,543	+		MIT1002_02863	0.48	-2.6
3,177,543	+		MIT1002_02863	0.48	-0.7
3,177,543	+		MIT1002_02863	0.48	+0.3
3,177,543	+		MIT1002_02863	0.48	-0.4
3,177,543	+		MIT1002_02863	0.48	-2.4
3,177,543	+		MIT1002_02863	0.48	-1.2
3,177,543	+		MIT1002_02863	0.48	+1.7
3,177,543	+		MIT1002_02863	0.48	-1.4
3,177,548	+		MIT1002_02863	0.49	-1.1
3,177,548	+		MIT1002_02863	0.49	-0.7
3,177,551	+		MIT1002_02863	0.50	-1.0
3,177,551	-		MIT1002_02863	0.50	+1.5
3,177,551	-		MIT1002_02863	0.50	-0.3
3,177,551	-		MIT1002_02863	0.50	+0.5
3,177,551	-		MIT1002_02863	0.50	+1.1
3,177,551	-		MIT1002_02863	0.50	+0.7
3,177,556	+		MIT1002_02863	0.51	+0.6
3,177,556	-		MIT1002_02863	0.51	+0.5
3,177,556	-		MIT1002_02863	0.51	-0.3
3,177,556	-		MIT1002_02863	0.51	-0.6
3,177,557	-		MIT1002_02863	0.51	-1.0
3,177,561	+		MIT1002_02863	0.52	+0.8
3,177,566	+		MIT1002_02863	0.53	+0.9
3,177,566	-		MIT1002_02863	0.53	-0.4
3,177,574	-		MIT1002_02863	0.55	-0.6
3,177,574	-		MIT1002_02863	0.55	+1.6
3,177,594	-		MIT1002_02863	0.59	+1.5
3,177,679	+		MIT1002_02863	0.77	+1.8
3,177,679	+		MIT1002_02863	0.77	-0.4
3,177,679	+		MIT1002_02863	0.77	-0.2
3,177,679	+		MIT1002_02863	0.77	-0.1
3,177,679	+		MIT1002_02863	0.77	-1.4
3,177,679	+		MIT1002_02863	0.77	-0.6
3,177,679	+		MIT1002_02863	0.77	+1.5
3,177,681	+		MIT1002_02863	0.77	+0.2
3,177,684	+		MIT1002_02863	0.78	+1.7
3,177,686	-		MIT1002_02863	0.78	+0.4
3,177,687	-		MIT1002_02863	0.79	-1.0
3,177,687	-		MIT1002_02863	0.79	-0.3
3,177,687	-		MIT1002_02863	0.79	-0.1
3,177,687	-		MIT1002_02863	0.79	+0.4
3,177,687	-		MIT1002_02863	0.79	+0.5
3,177,687	-		MIT1002_02863	0.79	-0.8
3,177,687	-		MIT1002_02863	0.79	-0.1
3,177,687	-		MIT1002_02863	0.79	-0.3
3,177,689	+		MIT1002_02863	0.79	-1.4
3,177,689	+		MIT1002_02863	0.79	+1.2
3,177,697	-		MIT1002_02863	0.81	-0.1
3,177,717	-		MIT1002_02863	0.85	+0.4
3,177,717	-		MIT1002_02863	0.85	-2.6
3,177,781	+				-2.2
3,177,797	-				-0.1
3,177,815	+				-1.6
3,177,823	-				-1.6
3,177,823	-				+0.9
3,177,825	-				+0.1
3,177,828	+				-0.2
3,177,833	-				+1.5
3,177,834	+				-0.4
3,177,834	+				+0.2
3,177,835	-				-1.6
3,177,835	-				+2.0
3,177,935	+		MIT1002_02864	0.13	+2.5
3,177,963	+		MIT1002_02864	0.16	-0.6
3,177,971	-		MIT1002_02864	0.17	-0.2
3,177,979	+		MIT1002_02864	0.18	+1.1
3,177,982	-		MIT1002_02864	0.19	+0.3
3,177,984	+		MIT1002_02864	0.19	+0.4
3,177,987	-		MIT1002_02864	0.19	+0.2