Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02423

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6
2,705,026	+		MIT1002_02422	0.71	+1.1
2,705,048	+		MIT1002_02422	0.72	+0.9
2,705,048	+		MIT1002_02422	0.72	-0.1
2,705,053	+		MIT1002_02422	0.72	-1.1
2,705,056	-		MIT1002_02422	0.72	+0.7
2,705,056	-		MIT1002_02422	0.72	-1.0
2,705,058	+		MIT1002_02422	0.72	+0.6
2,705,066	-		MIT1002_02422	0.73	+0.4
2,705,161	+		MIT1002_02422	0.78	-1.6
2,705,169	-		MIT1002_02422	0.78	+0.0
2,705,206	+		MIT1002_02422	0.80	+0.1
2,705,222	-		MIT1002_02422	0.81	-2.3
2,705,237	-		MIT1002_02422	0.82	-1.2
2,705,237	-		MIT1002_02422	0.82	-2.4
2,705,239	-		MIT1002_02422	0.82	+0.8
2,705,324	+		MIT1002_02422	0.87	+1.5
2,705,332	-		MIT1002_02422	0.87	+2.3
2,705,351	-		MIT1002_02422	0.88	-0.9
2,705,351	-		MIT1002_02422	0.88	-1.4
2,705,353	+		MIT1002_02422	0.88	-1.7
2,705,361	-		MIT1002_02422	0.89	+0.7
2,705,361	-		MIT1002_02422	0.89	+0.9
2,705,390	-				-2.7
2,705,438	+				-1.5
2,705,458	+				+0.0
2,705,458	+				-1.5
2,705,466	-				-0.2
2,705,466	-				+1.0
2,705,468	-				-0.5
2,705,470	+				+0.7
2,705,508	+				-2.0
2,705,514	+				+1.4
2,705,514	+				+1.0
2,705,524	-				+0.0
2,705,613	-				-0.6
2,705,617	+				-0.9
2,705,617	+				+0.5
2,705,649	-				+1.9
2,705,649	-				-0.2
2,705,863	-				+0.4
2,705,863	-				-2.2
2,705,863	-				+0.3
2,705,863	-				+0.9
2,705,885	+				+0.8
2,705,893	-				+0.1
2,706,088	+				+0.9
2,706,096	-				+1.0
2,706,159	+		MIT1002_02423	0.11	-0.6
2,706,159	+		MIT1002_02423	0.11	+0.2
2,706,201	+		MIT1002_02423	0.14	+0.5
2,706,298	-		MIT1002_02423	0.22	-0.8
2,706,309	+		MIT1002_02423	0.23	-1.7
2,706,309	+		MIT1002_02423	0.23	-0.9
2,706,309	+		MIT1002_02423	0.23	+0.5
2,706,317	-		MIT1002_02423	0.24	-2.2
2,706,317	-		MIT1002_02423	0.24	+2.1
2,706,337	+		MIT1002_02423	0.26	-0.9
2,706,337	+		MIT1002_02423	0.26	-1.7
2,706,394	-		MIT1002_02423	0.30	+0.7
2,706,394	-		MIT1002_02423	0.30	+0.6
2,706,430	-		MIT1002_02423	0.33	-0.8
2,706,433	+		MIT1002_02423	0.33	-0.7
2,706,441	-		MIT1002_02423	0.34	-0.8
2,706,480	-		MIT1002_02423	0.37	-0.5
2,706,483	+		MIT1002_02423	0.37	+1.1
2,706,491	-		MIT1002_02423	0.38	-0.6
2,706,551	+		MIT1002_02423	0.43	+0.4
2,706,551	+		MIT1002_02423	0.43	-2.5
2,706,553	+		MIT1002_02423	0.43	+1.3
2,706,559	-		MIT1002_02423	0.44	+0.1
2,706,565	+		MIT1002_02423	0.44	+1.1
2,706,565	+		MIT1002_02423	0.44	-1.8
2,706,573	-		MIT1002_02423	0.45	+1.5
2,706,575	+		MIT1002_02423	0.45	-1.0
2,706,575	+		MIT1002_02423	0.45	-0.2
2,706,634	+		MIT1002_02423	0.50	-0.1
2,706,653	-		MIT1002_02423	0.51	+0.3
2,706,686	+		MIT1002_02423	0.54	+1.4
2,706,686	+		MIT1002_02423	0.54	+1.1
2,706,706	+		MIT1002_02423	0.56	-0.8
2,706,714	-		MIT1002_02423	0.56	+0.0
2,706,714	-		MIT1002_02423	0.56	-0.2
2,706,714	-		MIT1002_02423	0.56	+0.1
2,706,744	+		MIT1002_02423	0.59	+0.1
2,706,744	-		MIT1002_02423	0.59	+0.2
2,706,885	+		MIT1002_02423	0.70	-2.2
2,706,887	+		MIT1002_02423	0.70	+0.4
2,706,893	-		MIT1002_02423	0.71	-0.7
2,706,893	-		MIT1002_02423	0.71	+1.1
2,706,895	-		MIT1002_02423	0.71	-1.8
2,707,029	+		MIT1002_02423	0.82	-0.8
2,707,050	+		MIT1002_02423	0.83	+2.1
2,707,057	+		MIT1002_02423	0.84	-0.4
2,707,148	-				+1.0
2,707,206	-				+0.7
2,707,417	-				-2.4
2,707,500	-				+0.7
2,707,504	+				-0.1
2,707,538	-		MIT1002_02424	0.14	+0.8
2,707,546	+		MIT1002_02424	0.15	+0.9
2,707,546	+		MIT1002_02424	0.15	+0.0
2,707,554	-		MIT1002_02424	0.16	+1.4
2,707,599	+		MIT1002_02424	0.22	+1.9
2,707,607	-		MIT1002_02424	0.23	-0.4
2,707,672	+		MIT1002_02424	0.32	-0.1
2,707,817	+		MIT1002_02424	0.51	-0.8
2,707,868	+		MIT1002_02424	0.58	-0.1
2,707,878	+		MIT1002_02424	0.59	-0.9
2,707,903	-		MIT1002_02424	0.62	+0.9
2,707,903	-		MIT1002_02424	0.62	-0.5
2,707,968	-		MIT1002_02424	0.71	-0.5
2,707,997	+		MIT1002_02424	0.75	-1.0
2,708,012	+		MIT1002_02424	0.77	-0.0
2,708,012	+		MIT1002_02424	0.77	-0.4
2,708,012	+		MIT1002_02424	0.77	-0.0
2,708,012	+		MIT1002_02424	0.77	-0.4
2,708,020	-		MIT1002_02424	0.78	+0.4
2,708,022	-		MIT1002_02424	0.78	-0.9
2,708,149	+				+0.2
2,708,157	-				-0.6
2,708,157	-				-2.5
2,708,157	-				+0.6
2,708,202	+				+0.2
2,708,210	-				+1.4
2,708,210	-				+0.4