Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02016

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6
2,256,971	+				-1.5
2,256,983	+				-0.7
2,256,991	-				-1.2
2,257,009	-				-1.7
2,257,099	+		MIT1002_02015	0.15	-0.2
2,257,102	-		MIT1002_02015	0.16	-0.1
2,257,146	+		MIT1002_02015	0.21	-0.0
2,257,186	+		MIT1002_02015	0.25	-0.3
2,257,362	-		MIT1002_02015	0.45	+0.8
2,257,431	+		MIT1002_02015	0.53	+0.7
2,257,466	+		MIT1002_02015	0.57	+0.3
2,257,508	-		MIT1002_02015	0.62	+0.3
2,257,516	-		MIT1002_02015	0.63	-1.3
2,257,641	-		MIT1002_02015	0.77	+0.7
2,257,700	-		MIT1002_02015	0.84	-1.1
2,257,876	-				-0.4
2,257,917	+				-0.2
2,257,935	+				-2.3
2,258,020	+				-1.1
2,258,049	+				-0.6
2,258,055	+				-1.1
2,258,096	-				-0.4
2,258,170	-		MIT1002_02016	0.13	-0.7
2,258,225	-		MIT1002_02016	0.16	-0.0
2,258,303	-		MIT1002_02016	0.20	-2.8
2,258,309	-		MIT1002_02016	0.20	-2.1
2,258,439	+		MIT1002_02016	0.27	-2.0
2,258,439	+		MIT1002_02016	0.27	+0.7
2,258,459	+		MIT1002_02016	0.28	+0.3
2,258,467	-		MIT1002_02016	0.29	-0.2
2,258,506	+		MIT1002_02016	0.31	-0.8
2,258,511	+		MIT1002_02016	0.31	-1.7
2,258,582	+		MIT1002_02016	0.35	-2.8
2,258,641	-		MIT1002_02016	0.38	-1.5
2,258,835	-		MIT1002_02016	0.48	+0.4
2,258,837	+		MIT1002_02016	0.48	-0.4
2,258,879	+		MIT1002_02016	0.51	+1.0
2,258,879	+		MIT1002_02016	0.51	-1.5
2,258,879	+		MIT1002_02016	0.51	-1.5
2,258,887	-		MIT1002_02016	0.51	-0.3
2,258,887	-		MIT1002_02016	0.51	-1.2
2,258,889	+		MIT1002_02016	0.51	-0.2
2,258,889	+		MIT1002_02016	0.51	+0.1
2,258,891	+		MIT1002_02016	0.51	+1.7
2,258,891	+		MIT1002_02016	0.51	-0.2
2,258,899	-		MIT1002_02016	0.52	+0.5
2,258,928	+		MIT1002_02016	0.53	-1.6
2,258,936	-		MIT1002_02016	0.54	+0.6
2,258,936	-		MIT1002_02016	0.54	+0.6
2,258,992	+		MIT1002_02016	0.57	-1.4
2,259,000	-		MIT1002_02016	0.57	-1.0
2,259,001	-		MIT1002_02016	0.57	-1.0
2,259,046	-		MIT1002_02016	0.60	-2.2
2,259,089	+		MIT1002_02016	0.62	-1.2
2,259,091	+		MIT1002_02016	0.62	-2.7
2,259,099	-		MIT1002_02016	0.62	-2.8
2,259,128	+		MIT1002_02016	0.64	-1.6
2,259,140	+		MIT1002_02016	0.65	+0.3
2,259,140	+		MIT1002_02016	0.65	+0.1
2,259,153	-		MIT1002_02016	0.65	-0.1
2,259,153	-		MIT1002_02016	0.65	-2.2
2,259,168	-		MIT1002_02016	0.66	+1.1
2,259,168	-		MIT1002_02016	0.66	-1.5
2,259,282	+		MIT1002_02016	0.72	-1.0
2,259,289	+		MIT1002_02016	0.72	-0.2
2,259,291	+		MIT1002_02016	0.73	-2.0
2,259,299	+		MIT1002_02016	0.73	-1.9
2,259,299	+		MIT1002_02016	0.73	-0.6
2,259,299	+		MIT1002_02016	0.73	+0.3
2,259,307	-		MIT1002_02016	0.73	-0.8
2,259,307	-		MIT1002_02016	0.73	-0.6
2,259,307	-		MIT1002_02016	0.73	+0.5
2,259,307	-		MIT1002_02016	0.73	+0.3
2,259,307	-		MIT1002_02016	0.73	-0.5
2,259,307	-		MIT1002_02016	0.73	-0.8
2,259,307	-		MIT1002_02016	0.73	-0.5
2,259,307	-		MIT1002_02016	0.73	-1.0
2,259,307	-		MIT1002_02016	0.73	-1.2
2,259,307	-		MIT1002_02016	0.73	-3.8
2,259,365	+		MIT1002_02016	0.77	-2.1
2,259,365	+		MIT1002_02016	0.77	+1.7
2,259,365	-		MIT1002_02016	0.77	-0.5
2,259,393	-		MIT1002_02016	0.78	-1.0
2,259,410	+		MIT1002_02016	0.79	-0.9
2,259,426	+		MIT1002_02016	0.80	-0.7
2,259,441	-		MIT1002_02016	0.81	-1.7
2,259,477	+		MIT1002_02016	0.82	+1.1
2,259,477	+		MIT1002_02016	0.82	-0.1
2,259,587	+		MIT1002_02016	0.88	-0.1
2,259,618	-		MIT1002_02016	0.90	-1.0
2,259,680	-				+0.0
2,259,696	+				+0.1
2,259,915	-		MIT1002_02017	0.13	+0.1
2,260,065	+		MIT1002_02017	0.31	-0.4
2,260,065	+		MIT1002_02017	0.31	-1.9
2,260,073	-		MIT1002_02017	0.32	-2.2
2,260,073	-		MIT1002_02017	0.32	+0.1
2,260,136	-		MIT1002_02017	0.39	+0.6
2,260,188	+		MIT1002_02017	0.45	-1.0
2,260,196	-		MIT1002_02017	0.46	-0.5
2,260,246	+		MIT1002_02017	0.52	-1.0
2,260,246	+		MIT1002_02017	0.52	-1.0
2,260,256	+		MIT1002_02017	0.53	+0.0
2,260,280	+		MIT1002_02017	0.56	+0.9
2,260,288	-		MIT1002_02017	0.57	-0.9
2,260,345	-		MIT1002_02017	0.63	-1.4
2,260,345	-		MIT1002_02017	0.63	-2.3
2,260,365	+		MIT1002_02017	0.66	-2.8
2,260,395	-		MIT1002_02017	0.69	+0.3
2,260,424	-		MIT1002_02017	0.73	-1.3
2,260,442	+		MIT1002_02017	0.75	-0.5
2,260,442	+		MIT1002_02017	0.75	+0.0
2,260,450	-		MIT1002_02017	0.76	-1.4
2,260,450	-		MIT1002_02017	0.76	+0.1
2,260,478	+		MIT1002_02017	0.79	+0.0
2,260,563	+		MIT1002_02017	0.89	+0.2
2,260,563	+		MIT1002_02017	0.89	+0.5
2,260,563	+		MIT1002_02017	0.89	+1.9
2,260,571	-		MIT1002_02017	0.90	+2.0
2,260,571	-		MIT1002_02017	0.90	-1.0
2,260,668	-				+1.6
2,260,673	-				-0.7
2,260,738	-		MIT1002_02018	0.13	-0.1
2,260,773	-		MIT1002_02018	0.20	+0.6
2,260,775	-		MIT1002_02018	0.20	+0.3