Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01484

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01481 and MIT1002_01482 overlap by 1 nucleotidesMIT1002_01482 and MIT1002_01483 are separated by 81 nucleotidesMIT1002_01483 and MIT1002_01484 are separated by 77 nucleotidesMIT1002_01484 and MIT1002_01485 are separated by 149 nucleotidesMIT1002_01485 and MIT1002_01486 are separated by 231 nucleotides MIT1002_01481: MIT1002_01481 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 1,641,030 to 1,642,229 _01481 MIT1002_01482: MIT1002_01482 - hypothetical protein, at 1,642,229 to 1,642,405 _01482 MIT1002_01483: MIT1002_01483 - hypothetical protein, at 1,642,487 to 1,642,969 _01483 MIT1002_01484: MIT1002_01484 - Copper outer membrane regulator, at 1,643,047 to 1,643,637 _01484 MIT1002_01485: MIT1002_01485 - putative peroxidase-related enzyme, at 1,643,787 to 1,644,326 _01485 MIT1002_01486: MIT1002_01486 - Transposase IS116/IS110/IS902 family protein, at 1,644,558 to 1,645,592 _01486 Position (kb) 1643 1644Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1642.178 kb on + strandat 1642.219 kb on + strandat 1642.284 kb on + strand, within MIT1002_01482at 1642.552 kb on - strand, within MIT1002_01483at 1642.553 kb on - strand, within MIT1002_01483at 1642.553 kb on - strand, within MIT1002_01483at 1642.580 kb on + strand, within MIT1002_01483at 1642.644 kb on - strand, within MIT1002_01483at 1642.646 kb on + strand, within MIT1002_01483at 1642.677 kb on + strand, within MIT1002_01483at 1642.685 kb on - strand, within MIT1002_01483at 1642.701 kb on + strand, within MIT1002_01483at 1642.701 kb on + strand, within MIT1002_01483at 1642.740 kb on + strand, within MIT1002_01483at 1642.740 kb on + strand, within MIT1002_01483at 1642.750 kb on + strand, within MIT1002_01483at 1642.807 kb on + strand, within MIT1002_01483at 1642.830 kb on - strand, within MIT1002_01483at 1642.830 kb on - strand, within MIT1002_01483at 1642.860 kb on + strand, within MIT1002_01483at 1642.872 kb on + strand, within MIT1002_01483at 1642.879 kb on + strand, within MIT1002_01483at 1642.881 kb on - strand, within MIT1002_01483at 1643.042 kb on - strandat 1643.145 kb on - strand, within MIT1002_01484at 1643.184 kb on - strand, within MIT1002_01484at 1643.351 kb on + strand, within MIT1002_01484at 1643.351 kb on + strand, within MIT1002_01484at 1643.374 kb on + strand, within MIT1002_01484at 1643.382 kb on - strand, within MIT1002_01484at 1643.436 kb on + strand, within MIT1002_01484at 1643.537 kb on + strand, within MIT1002_01484at 1643.647 kb on + strandat 1643.655 kb on - strandat 1643.837 kb on + strandat 1643.897 kb on + strand, within MIT1002_01485at 1643.915 kb on + strand, within MIT1002_01485at 1643.924 kb on + strand, within MIT1002_01485at 1643.934 kb on - strand, within MIT1002_01485at 1643.934 kb on - strand, within MIT1002_01485at 1643.936 kb on + strand, within MIT1002_01485at 1644.095 kb on + strand, within MIT1002_01485at 1644.115 kb on - strand, within MIT1002_01485at 1644.193 kb on - strand, within MIT1002_01485at 1644.194 kb on + strand, within MIT1002_01485at 1644.278 kb on + strandat 1644.286 kb on - strandat 1644.305 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6
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1,642,178 + -0.1
1,642,219 + -1.2
1,642,284 + MIT1002_01482 0.31 +0.3
1,642,552 - MIT1002_01483 0.13 +0.5
1,642,553 - MIT1002_01483 0.14 +0.9
1,642,553 - MIT1002_01483 0.14 +3.4
1,642,580 + MIT1002_01483 0.19 +1.6
1,642,644 - MIT1002_01483 0.33 +0.6
1,642,646 + MIT1002_01483 0.33 -1.3
1,642,677 + MIT1002_01483 0.39 -0.6
1,642,685 - MIT1002_01483 0.41 +1.9
1,642,701 + MIT1002_01483 0.44 -0.6
1,642,701 + MIT1002_01483 0.44 +1.5
1,642,740 + MIT1002_01483 0.52 -1.1
1,642,740 + MIT1002_01483 0.52 +0.9
1,642,750 + MIT1002_01483 0.54 +0.4
1,642,807 + MIT1002_01483 0.66 -2.7
1,642,830 - MIT1002_01483 0.71 +0.7
1,642,830 - MIT1002_01483 0.71 -0.3
1,642,860 + MIT1002_01483 0.77 +0.7
1,642,872 + MIT1002_01483 0.80 +0.9
1,642,879 + MIT1002_01483 0.81 -0.2
1,642,881 - MIT1002_01483 0.82 -1.2
1,643,042 - +0.0
1,643,145 - MIT1002_01484 0.17 -0.5
1,643,184 - MIT1002_01484 0.23 -2.2
1,643,351 + MIT1002_01484 0.51 -0.1
1,643,351 + MIT1002_01484 0.51 -0.5
1,643,374 + MIT1002_01484 0.55 -0.6
1,643,382 - MIT1002_01484 0.57 +0.1
1,643,436 + MIT1002_01484 0.66 -1.3
1,643,537 + MIT1002_01484 0.83 -0.1
1,643,647 + +0.2
1,643,655 - +1.8
1,643,837 + +1.4
1,643,897 + MIT1002_01485 0.20 +0.1
1,643,915 + MIT1002_01485 0.24 -0.1
1,643,924 + MIT1002_01485 0.25 +0.8
1,643,934 - MIT1002_01485 0.27 -0.1
1,643,934 - MIT1002_01485 0.27 -0.3
1,643,936 + MIT1002_01485 0.28 -2.2
1,644,095 + MIT1002_01485 0.57 -1.4
1,644,115 - MIT1002_01485 0.61 +1.3
1,644,193 - MIT1002_01485 0.75 -0.1
1,644,194 + MIT1002_01485 0.75 -1.1
1,644,278 + -1.1
1,644,286 - +0.5
1,644,305 - -0.1

Or see this region's nucleotide sequence