Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01440

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6
1,582,909	+				+1.0
1,582,917	-				+1.5
1,582,917	-				-0.3
1,582,920	+				+1.8
1,582,928	-				+1.7
1,582,995	+				+0.0
1,582,998	-				+1.1
1,583,002	+				-0.4
1,583,002	+				-0.3
1,583,002	+				-1.7
1,583,002	+				-1.0
1,583,002	+				+0.2
1,583,003	-				-1.7
1,583,008	-				-3.6
1,583,010	-				-1.5
1,583,010	-				+1.1
1,583,014	+				+1.2
1,583,140	+				-1.6
1,583,146	-				+0.0
1,583,172	+				+0.5
1,583,172	+				+0.1
1,583,172	+				-0.1
1,583,172	+				+0.7
1,583,172	+				-1.4
1,583,180	-				-0.9
1,583,180	-				+2.7
1,583,182	+				+0.3
1,583,272	+				-0.7
1,583,314	+		MIT1002_01439	0.15	-0.4
1,583,314	+		MIT1002_01439	0.15	+1.2
1,583,314	+		MIT1002_01439	0.15	+0.2
1,583,322	-		MIT1002_01439	0.17	+0.5
1,583,322	-		MIT1002_01439	0.17	-0.4
1,583,359	+		MIT1002_01439	0.27	+0.3
1,583,365	+		MIT1002_01439	0.28	+0.2
1,583,386	-		MIT1002_01439	0.34	-0.8
1,583,406	+		MIT1002_01439	0.39	-1.8
1,583,406	+		MIT1002_01439	0.39	-0.5
1,583,415	-		MIT1002_01439	0.42	-0.1
1,583,421	-		MIT1002_01439	0.43	-1.7
1,583,426	-		MIT1002_01439	0.44	-0.3
1,583,532	+		MIT1002_01439	0.72	-0.4
1,583,532	+		MIT1002_01439	0.72	-1.3
1,583,532	+		MIT1002_01439	0.72	-1.9
1,583,540	-		MIT1002_01439	0.75	+0.2
1,583,540	-		MIT1002_01439	0.75	-1.3
1,583,540	-		MIT1002_01439	0.75	+0.8
1,583,599	+				-0.8
1,583,667	-				-0.9
1,583,725	+				+0.6
1,583,767	-				-1.0
1,583,801	+				-1.8
1,583,801	-				-0.6
1,583,814	-				-1.8
1,583,819	-				-0.1
1,583,885	+				-0.1
1,583,887	+				-1.0
1,583,902	-		MIT1002_01440	0.11	-0.4
1,583,902	-		MIT1002_01440	0.11	-2.5
1,583,959	-		MIT1002_01440	0.15	+0.5
1,583,959	-		MIT1002_01440	0.15	+0.7
1,583,991	+		MIT1002_01440	0.18	-0.0
1,584,014	-		MIT1002_01440	0.19	-1.1
1,584,024	+		MIT1002_01440	0.20	+0.5
1,584,126	+		MIT1002_01440	0.28	-3.1
1,584,243	+		MIT1002_01440	0.37	-1.0
1,584,330	+		MIT1002_01440	0.44	-1.1
1,584,360	-		MIT1002_01440	0.46	+0.3
1,584,496	-		MIT1002_01440	0.57	+0.2
1,584,554	-		MIT1002_01440	0.61	-0.2
1,584,601	+		MIT1002_01440	0.65	+1.0
1,584,601	+		MIT1002_01440	0.65	-0.8
1,584,601	+		MIT1002_01440	0.65	-1.1
1,584,601	+		MIT1002_01440	0.65	-0.8
1,584,609	-		MIT1002_01440	0.66	-0.8
1,584,723	-		MIT1002_01440	0.75	-1.8
1,584,725	+		MIT1002_01440	0.75	+0.3
1,584,733	-		MIT1002_01440	0.75	-0.9
1,584,733	-		MIT1002_01440	0.75	+1.5
1,584,812	-		MIT1002_01440	0.81	+1.5
1,584,839	-		MIT1002_01440	0.84	-1.2
1,584,851	+		MIT1002_01440	0.84	-3.1
1,584,999	-				+0.4
1,585,018	-				+1.6
1,585,093	-				-1.1
1,585,095	+				+0.8
1,585,115	-				+0.3
1,585,132	+				-0.1
1,585,258	+		MIT1002_01441	0.11	-0.5
1,585,266	-		MIT1002_01441	0.13	+1.5
1,585,273	-		MIT1002_01441	0.14	+0.5
1,585,274	+		MIT1002_01441	0.14	-0.3
1,585,332	-		MIT1002_01441	0.23	+1.0
1,585,410	+		MIT1002_01441	0.35	-0.0
1,585,562	+		MIT1002_01441	0.58	+2.6
1,585,570	-		MIT1002_01441	0.59	+0.7
1,585,576	+		MIT1002_01441	0.60	+1.5
1,585,576	+		MIT1002_01441	0.60	-1.4
1,585,576	+		MIT1002_01441	0.60	-2.1
1,585,611	-		MIT1002_01441	0.65	+0.8
1,585,619	+		MIT1002_01441	0.67	-2.2
1,585,624	+		MIT1002_01441	0.67	-0.2
1,585,632	-		MIT1002_01441	0.69	-0.4
1,585,632	-		MIT1002_01441	0.69	-0.5
1,585,632	-		MIT1002_01441	0.69	+0.5
1,585,632	-		MIT1002_01441	0.69	+2.3
1,585,632	-		MIT1002_01441	0.69	-0.3
1,585,647	-		MIT1002_01441	0.71	-1.2
1,585,676	+		MIT1002_01441	0.75	-1.2
1,585,678	+		MIT1002_01441	0.76	+0.2
1,585,701	-		MIT1002_01441	0.79	-0.3
1,585,765	+		MIT1002_01441	0.89	-0.4
1,585,772	+				+0.3
1,585,772	+				-0.6
1,585,780	-				+0.1
1,585,780	-				+1.0
1,585,789	+				-0.1
1,585,834	-				+0.1
1,585,893	+				+0.3
1,585,967	-				-1.4
1,585,989	+		MIT1002_01442	0.13	-1.4