Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01326

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6
1,471,628	-		MIT1002_01324	0.73	-0.6
1,471,628	-		MIT1002_01324	0.73	-0.1
1,471,649	-		MIT1002_01324	0.74	+0.3
1,471,666	+		MIT1002_01324	0.76	-0.7
1,471,667	-		MIT1002_01324	0.76	-0.4
1,471,677	+		MIT1002_01324	0.76	+0.2
1,471,685	-		MIT1002_01324	0.77	+0.3
1,471,685	-		MIT1002_01324	0.77	+2.1
1,471,704	+		MIT1002_01324	0.78	+1.9
1,471,712	-		MIT1002_01324	0.79	-0.4
1,471,753	-		MIT1002_01324	0.82	+0.5
1,471,811	-		MIT1002_01324	0.86	-0.3
1,471,811	-		MIT1002_01324	0.86	+0.1
1,471,818	-		MIT1002_01324	0.86	-0.1
1,471,821	+		MIT1002_01324	0.87	+1.5
1,471,848	-		MIT1002_01324	0.89	-0.2
1,471,888	+				-0.3
1,471,888	+				+0.3
1,471,888	+				+1.7
1,471,888	+				+1.1
1,471,888	+				+3.2
1,471,888	+				-0.2
1,471,888	+				-2.1
1,471,888	+				+0.5
1,471,896	-				+0.6
1,471,896	-				-0.8
1,471,896	-				-0.6
1,471,896	-				-0.3
1,471,896	-				+0.2
1,471,896	-				-0.9
1,471,896	-				+0.8
1,471,896	-				+0.5
1,471,896	-				+0.4
1,471,896	-				-0.2
1,471,931	+				+0.1
1,471,939	-				-0.7
1,471,969	-				+4.1
1,472,035	-				+0.6
1,472,151	+		MIT1002_01325	0.24	-0.4
1,472,161	-		MIT1002_01325	0.26	+0.3
1,472,161	-		MIT1002_01325	0.26	+0.4
1,472,221	+		MIT1002_01325	0.36	-0.0
1,472,226	+		MIT1002_01325	0.37	-0.1
1,472,265	-		MIT1002_01325	0.44	-0.3
1,472,279	+		MIT1002_01325	0.46	+0.6
1,472,279	+		MIT1002_01325	0.46	+0.6
1,472,308	+		MIT1002_01325	0.51	+0.1
1,472,347	-		MIT1002_01325	0.58	+1.3
1,472,367	+		MIT1002_01325	0.61	+1.6
1,472,367	+		MIT1002_01325	0.61	+0.9
1,472,511	+		MIT1002_01325	0.86	+0.0
1,472,511	+		MIT1002_01325	0.86	+1.5
1,472,519	-		MIT1002_01325	0.87	+1.2
1,472,556	-				-1.3
1,472,580	+				+0.2
1,472,580	+				-0.1
1,472,580	+				-1.7
1,472,585	-				+0.2
1,472,588	-				-0.8
1,472,588	-				-0.1
1,472,590	-				+0.6
1,472,606	+				+0.6
1,472,621	-				-2.1
1,472,683	+				+0.3
1,472,692	-				-2.2
1,472,692	-				-0.3
1,472,692	-				+0.7
1,472,692	-				+0.5
1,472,851	+		MIT1002_01326	0.19	+0.1
1,472,859	-		MIT1002_01326	0.20	+0.5
1,472,875	+		MIT1002_01326	0.21	-3.7
1,472,875	+		MIT1002_01326	0.21	+2.8
1,472,879	+		MIT1002_01326	0.22	-0.1
1,472,879	+		MIT1002_01326	0.22	+0.8
1,472,956	+		MIT1002_01326	0.27	+0.5
1,472,957	+		MIT1002_01326	0.27	-2.4
1,472,967	+		MIT1002_01326	0.28	+0.6
1,472,967	+		MIT1002_01326	0.28	+0.1
1,472,967	+		MIT1002_01326	0.28	-1.1
1,472,967	+		MIT1002_01326	0.28	-0.2
1,472,975	-		MIT1002_01326	0.29	-1.8
1,472,975	-		MIT1002_01326	0.29	+1.1
1,472,980	-		MIT1002_01326	0.29	-1.6
1,473,001	-		MIT1002_01326	0.31	+0.7
1,473,042	-		MIT1002_01326	0.34	-2.8
1,473,061	-		MIT1002_01326	0.35	-0.8
1,473,211	-		MIT1002_01326	0.46	+0.2
1,473,230	-		MIT1002_01326	0.48	-2.2
1,473,230	-		MIT1002_01326	0.48	-1.1
1,473,242	+		MIT1002_01326	0.49	-0.0
1,473,262	+		MIT1002_01326	0.50	+0.9
1,473,267	+		MIT1002_01326	0.50	+1.5
1,473,275	-		MIT1002_01326	0.51	-1.3
1,473,289	+		MIT1002_01326	0.52	-0.4
1,473,350	+		MIT1002_01326	0.57	+0.9
1,473,350	+		MIT1002_01326	0.57	+0.1
1,473,358	-		MIT1002_01326	0.57	-0.7
1,473,358	-		MIT1002_01326	0.57	+0.8
1,473,358	-		MIT1002_01326	0.57	-0.6
1,473,358	-		MIT1002_01326	0.57	+0.2
1,473,579	+		MIT1002_01326	0.74	+0.2
1,473,581	+		MIT1002_01326	0.74	-0.8
1,473,622	-		MIT1002_01326	0.77	-2.4
1,473,661	-		MIT1002_01326	0.80	+1.4
1,473,681	+		MIT1002_01326	0.81	+1.9
1,473,694	-		MIT1002_01326	0.82	-0.9
1,473,698	+		MIT1002_01326	0.83	+1.4
1,473,722	+		MIT1002_01326	0.84	+0.0
1,473,730	-		MIT1002_01326	0.85	+0.2
1,473,730	-		MIT1002_01326	0.85	+1.0
1,473,730	-		MIT1002_01326	0.85	+1.9
1,473,735	+		MIT1002_01326	0.85	-0.5
1,473,743	-		MIT1002_01326	0.86	+0.6
1,473,767	+		MIT1002_01326	0.88	-0.1
1,473,770	+		MIT1002_01326	0.88	-1.6
1,473,777	+		MIT1002_01326	0.89	-0.1
1,473,785	-		MIT1002_01326	0.89	+1.4
1,473,785	-		MIT1002_01326	0.89	+1.0
1,473,856	-				-0.3
1,473,877	+				-0.3
1,473,882	+				-1.7
1,473,940	+				-0.5
1,473,948	-				-0.5
1,474,011	-				+1.3
1,474,016	-				+0.7
1,474,029	-				-0.2
1,474,109	-		MIT1002_01327	0.19	+0.3
1,474,158	-		MIT1002_01327	0.29	-0.3
1,474,163	+		MIT1002_01327	0.30	+0.7
1,474,171	-		MIT1002_01327	0.32	+0.5
1,474,171	-		MIT1002_01327	0.32	+0.0
1,474,174	+		MIT1002_01327	0.32	+1.2
1,474,198	+		MIT1002_01327	0.37	+0.8
1,474,316	+		MIT1002_01327	0.62	-1.5
1,474,316	+		MIT1002_01327	0.62	-0.4
1,474,318	+		MIT1002_01327	0.62	-1.1
1,474,336	-		MIT1002_01327	0.66	-1.5
1,474,405	+		MIT1002_01327	0.80	+0.4
1,474,413	-		MIT1002_01327	0.81	-0.2
1,474,507	-				-0.9
1,474,520	+				-0.1
1,474,639	+				-0.2
1,474,647	-				-2.1
1,474,647	-				+0.3
1,474,689	+				+0.1
1,474,691	+				+0.1
1,474,697	-				-1.9
1,474,730	-		MIT1002_01328	0.12	+0.7