Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00870 and MIT1002_00871 are separated by 130 nucleotides MIT1002_00871 and MIT1002_00872 are separated by 16 nucleotides
MIT1002_00870: MIT1002_00870 - Prolyl tripeptidyl peptidase precursor, at 958,182 to 960,308
_00870
MIT1002_00871: MIT1002_00871 - Exopolyphosphatase, at 960,439 to 962,001
_00871
MIT1002_00872: MIT1002_00872 - Polyphosphate kinase, at 962,018 to 964,090
_00872
Position (kb) 960
961
962
963 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 959.544 kb on + strand, within MIT1002_00870 at 959.560 kb on - strand, within MIT1002_00870 at 959.562 kb on - strand, within MIT1002_00870 at 959.663 kb on + strand, within MIT1002_00870 at 959.671 kb on - strand, within MIT1002_00870 at 959.678 kb on + strand, within MIT1002_00870 at 959.686 kb on - strand, within MIT1002_00870 at 959.686 kb on - strand, within MIT1002_00870 at 959.710 kb on + strand, within MIT1002_00870 at 959.716 kb on - strand, within MIT1002_00870 at 959.721 kb on - strand, within MIT1002_00870 at 959.751 kb on + strand, within MIT1002_00870 at 959.753 kb on + strand, within MIT1002_00870 at 959.759 kb on - strand, within MIT1002_00870 at 959.774 kb on - strand, within MIT1002_00870 at 959.784 kb on - strand, within MIT1002_00870 at 959.840 kb on + strand, within MIT1002_00870 at 959.884 kb on + strand, within MIT1002_00870 at 959.884 kb on - strand, within MIT1002_00870 at 959.911 kb on - strand, within MIT1002_00870 at 959.960 kb on - strand, within MIT1002_00870 at 960.024 kb on - strand, within MIT1002_00870 at 960.064 kb on - strand, within MIT1002_00870 at 960.073 kb on + strand, within MIT1002_00870 at 960.073 kb on + strand, within MIT1002_00870 at 960.077 kb on - strand, within MIT1002_00870 at 960.081 kb on - strand, within MIT1002_00870 at 960.083 kb on + strand, within MIT1002_00870 at 960.116 kb on + strand at 960.116 kb on + strand at 960.116 kb on + strand at 960.116 kb on + strand at 960.124 kb on - strand at 960.124 kb on - strand at 960.139 kb on - strand at 960.158 kb on + strand at 960.212 kb on - strand at 960.213 kb on - strand at 960.293 kb on + strand at 960.361 kb on - strand at 960.361 kb on - strand at 960.528 kb on + strand at 960.573 kb on + strand at 960.594 kb on + strand at 960.618 kb on + strand, within MIT1002_00871 at 960.626 kb on - strand, within MIT1002_00871 at 960.649 kb on - strand, within MIT1002_00871 at 960.705 kb on + strand, within MIT1002_00871 at 960.713 kb on - strand, within MIT1002_00871 at 960.807 kb on - strand, within MIT1002_00871 at 960.831 kb on + strand, within MIT1002_00871 at 960.913 kb on + strand, within MIT1002_00871 at 960.922 kb on + strand, within MIT1002_00871 at 960.957 kb on + strand, within MIT1002_00871 at 961.087 kb on - strand, within MIT1002_00871 at 961.119 kb on - strand, within MIT1002_00871 at 961.191 kb on + strand, within MIT1002_00871 at 961.284 kb on + strand, within MIT1002_00871 at 961.294 kb on + strand, within MIT1002_00871 at 961.328 kb on + strand, within MIT1002_00871 at 961.360 kb on - strand, within MIT1002_00871 at 961.409 kb on - strand, within MIT1002_00871 at 961.470 kb on + strand, within MIT1002_00871 at 961.478 kb on - strand, within MIT1002_00871 at 961.510 kb on + strand, within MIT1002_00871 at 961.557 kb on - strand, within MIT1002_00871 at 961.566 kb on + strand, within MIT1002_00871 at 961.782 kb on + strand, within MIT1002_00871 at 961.870 kb on - strand at 961.941 kb on - strand at 962.027 kb on + strand at 962.108 kb on + strand at 962.108 kb on + strand at 962.182 kb on + strand at 962.190 kb on - strand at 962.190 kb on - strand at 962.191 kb on - strand at 962.213 kb on - strand at 962.261 kb on + strand, within MIT1002_00872 at 962.267 kb on - strand, within MIT1002_00872 at 962.374 kb on + strand, within MIT1002_00872 at 962.400 kb on + strand, within MIT1002_00872 at 962.435 kb on + strand, within MIT1002_00872 at 962.506 kb on + strand, within MIT1002_00872 at 962.619 kb on - strand, within MIT1002_00872 at 962.679 kb on + strand, within MIT1002_00872 at 962.679 kb on + strand, within MIT1002_00872 at 962.706 kb on + strand, within MIT1002_00872 at 962.744 kb on + strand, within MIT1002_00872 at 962.744 kb on + strand, within MIT1002_00872 at 962.752 kb on - strand, within MIT1002_00872 at 962.813 kb on + strand, within MIT1002_00872 at 962.821 kb on - strand, within MIT1002_00872 at 962.829 kb on + strand, within MIT1002_00872 at 962.837 kb on - strand, within MIT1002_00872 at 962.909 kb on + strand, within MIT1002_00872 at 962.917 kb on - strand, within MIT1002_00872 at 962.917 kb on - strand, within MIT1002_00872
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6 remove 959,544 + MIT1002_00870 0.64 +0.3 959,560 - MIT1002_00870 0.65 +0.3 959,562 - MIT1002_00870 0.65 +0.9 959,663 + MIT1002_00870 0.70 +1.8 959,671 - MIT1002_00870 0.70 -2.2 959,678 + MIT1002_00870 0.70 +0.3 959,686 - MIT1002_00870 0.71 -1.5 959,686 - MIT1002_00870 0.71 -0.2 959,710 + MIT1002_00870 0.72 +0.2 959,716 - MIT1002_00870 0.72 -2.4 959,721 - MIT1002_00870 0.72 -0.8 959,751 + MIT1002_00870 0.74 -1.0 959,753 + MIT1002_00870 0.74 -1.7 959,759 - MIT1002_00870 0.74 +0.6 959,774 - MIT1002_00870 0.75 -2.0 959,784 - MIT1002_00870 0.75 -1.3 959,840 + MIT1002_00870 0.78 -0.0 959,884 + MIT1002_00870 0.80 +1.2 959,884 - MIT1002_00870 0.80 -1.2 959,911 - MIT1002_00870 0.81 +0.1 959,960 - MIT1002_00870 0.84 +0.5 960,024 - MIT1002_00870 0.87 +0.5 960,064 - MIT1002_00870 0.88 -0.1 960,073 + MIT1002_00870 0.89 -0.5 960,073 + MIT1002_00870 0.89 +1.3 960,077 - MIT1002_00870 0.89 +0.4 960,081 - MIT1002_00870 0.89 +2.0 960,083 + MIT1002_00870 0.89 +0.7 960,116 + +0.0 960,116 + -0.5 960,116 + -1.4 960,116 + -2.3 960,124 - +0.8 960,124 - +0.7 960,139 - -0.5 960,158 + -1.0 960,212 - +0.7 960,213 - +0.5 960,293 + +1.0 960,361 - -0.5 960,361 - -0.1 960,528 + -1.3 960,573 + -0.4 960,594 + -0.5 960,618 + MIT1002_00871 0.11 -0.6 960,626 - MIT1002_00871 0.12 -0.8 960,649 - MIT1002_00871 0.13 -0.1 960,705 + MIT1002_00871 0.17 -1.9 960,713 - MIT1002_00871 0.18 -0.9 960,807 - MIT1002_00871 0.24 -1.5 960,831 + MIT1002_00871 0.25 +0.2 960,913 + MIT1002_00871 0.30 -1.1 960,922 + MIT1002_00871 0.31 -0.2 960,957 + MIT1002_00871 0.33 -1.9 961,087 - MIT1002_00871 0.41 +0.1 961,119 - MIT1002_00871 0.44 -0.9 961,191 + MIT1002_00871 0.48 -0.0 961,284 + MIT1002_00871 0.54 +1.0 961,294 + MIT1002_00871 0.55 -2.1 961,328 + MIT1002_00871 0.57 +0.4 961,360 - MIT1002_00871 0.59 +0.1 961,409 - MIT1002_00871 0.62 -1.8 961,470 + MIT1002_00871 0.66 -0.6 961,478 - MIT1002_00871 0.66 +0.4 961,510 + MIT1002_00871 0.69 -0.9 961,557 - MIT1002_00871 0.72 -0.6 961,566 + MIT1002_00871 0.72 -0.2 961,782 + MIT1002_00871 0.86 -0.3 961,870 - +0.5 961,941 - +1.0 962,027 + -0.9 962,108 + -3.5 962,108 + -0.1 962,182 + -1.8 962,190 - -1.2 962,190 - -1.5 962,191 - -1.5 962,213 - -2.7 962,261 + MIT1002_00872 0.12 +0.6 962,267 - MIT1002_00872 0.12 -2.2 962,374 + MIT1002_00872 0.17 -1.7 962,400 + MIT1002_00872 0.18 -3.3 962,435 + MIT1002_00872 0.20 -3.0 962,506 + MIT1002_00872 0.24 -3.3 962,619 - MIT1002_00872 0.29 -2.3 962,679 + MIT1002_00872 0.32 -0.4 962,679 + MIT1002_00872 0.32 -3.0 962,706 + MIT1002_00872 0.33 -3.5 962,744 + MIT1002_00872 0.35 -0.1 962,744 + MIT1002_00872 0.35 -0.5 962,752 - MIT1002_00872 0.35 -3.5 962,813 + MIT1002_00872 0.38 -2.1 962,821 - MIT1002_00872 0.39 -1.7 962,829 + MIT1002_00872 0.39 -2.1 962,837 - MIT1002_00872 0.40 -1.8 962,909 + MIT1002_00872 0.43 -1.0 962,917 - MIT1002_00872 0.43 -4.4 962,917 - MIT1002_00872 0.43 -0.8
Or see this region's nucleotide sequence