Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00866 and MIT1002_00867 are separated by 9 nucleotides MIT1002_00867 and MIT1002_00868 overlap by 11 nucleotides
MIT1002_00866: MIT1002_00866 - Toluene efflux pump periplasmic linker protein TtgA precursor, at 951,643 to 952,728
_00866
MIT1002_00867: MIT1002_00867 - Efflux pump membrane transporter BepE, at 952,738 to 955,923
_00867
MIT1002_00868: MIT1002_00868 - Toluene efflux pump outer membrane protein TtgF precursor, at 955,913 to 957,391
_00868
Position (kb) 952
953
954
955
956 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 951.794 kb on + strand, within MIT1002_00866 at 951.806 kb on - strand, within MIT1002_00866 at 951.814 kb on - strand, within MIT1002_00866 at 951.845 kb on + strand, within MIT1002_00866 at 951.878 kb on + strand, within MIT1002_00866 at 951.878 kb on + strand, within MIT1002_00866 at 951.892 kb on + strand, within MIT1002_00866 at 951.931 kb on + strand, within MIT1002_00866 at 951.931 kb on + strand, within MIT1002_00866 at 951.931 kb on + strand, within MIT1002_00866 at 951.939 kb on - strand, within MIT1002_00866 at 951.939 kb on - strand, within MIT1002_00866 at 951.939 kb on - strand, within MIT1002_00866 at 952.065 kb on - strand, within MIT1002_00866 at 952.077 kb on + strand, within MIT1002_00866 at 952.085 kb on - strand, within MIT1002_00866 at 952.149 kb on + strand, within MIT1002_00866 at 952.217 kb on + strand, within MIT1002_00866 at 952.225 kb on - strand, within MIT1002_00866 at 952.241 kb on + strand, within MIT1002_00866 at 952.252 kb on + strand, within MIT1002_00866 at 952.252 kb on + strand, within MIT1002_00866 at 952.252 kb on + strand, within MIT1002_00866 at 952.252 kb on + strand, within MIT1002_00866 at 952.260 kb on - strand, within MIT1002_00866 at 952.260 kb on - strand, within MIT1002_00866 at 952.260 kb on - strand, within MIT1002_00866 at 952.260 kb on - strand, within MIT1002_00866 at 952.260 kb on - strand, within MIT1002_00866 at 952.281 kb on - strand, within MIT1002_00866 at 952.288 kb on - strand, within MIT1002_00866 at 952.289 kb on + strand, within MIT1002_00866 at 952.310 kb on + strand, within MIT1002_00866 at 952.321 kb on + strand, within MIT1002_00866 at 952.329 kb on - strand, within MIT1002_00866 at 952.329 kb on - strand, within MIT1002_00866 at 952.383 kb on - strand, within MIT1002_00866 at 952.403 kb on - strand, within MIT1002_00866 at 952.431 kb on - strand, within MIT1002_00866 at 952.530 kb on - strand, within MIT1002_00866 at 952.565 kb on - strand, within MIT1002_00866 at 952.576 kb on - strand, within MIT1002_00866 at 952.612 kb on - strand, within MIT1002_00866 at 952.612 kb on - strand, within MIT1002_00866 at 952.678 kb on - strand at 952.678 kb on - strand at 952.723 kb on + strand at 952.723 kb on + strand at 952.723 kb on + strand at 952.723 kb on + strand at 952.723 kb on + strand at 952.723 kb on + strand at 952.731 kb on - strand at 952.731 kb on - strand at 952.731 kb on - strand at 952.816 kb on + strand at 952.832 kb on + strand at 952.878 kb on + strand at 952.886 kb on - strand at 952.923 kb on + strand at 952.931 kb on - strand at 952.936 kb on - strand at 953.013 kb on - strand at 953.091 kb on + strand, within MIT1002_00867 at 953.091 kb on + strand, within MIT1002_00867 at 953.096 kb on + strand, within MIT1002_00867 at 953.099 kb on - strand, within MIT1002_00867 at 953.099 kb on - strand, within MIT1002_00867 at 953.114 kb on - strand, within MIT1002_00867 at 953.122 kb on - strand, within MIT1002_00867 at 953.130 kb on + strand, within MIT1002_00867 at 953.131 kb on + strand, within MIT1002_00867 at 953.256 kb on - strand, within MIT1002_00867 at 953.393 kb on - strand, within MIT1002_00867 at 953.405 kb on + strand, within MIT1002_00867 at 953.432 kb on - strand, within MIT1002_00867 at 953.614 kb on + strand, within MIT1002_00867 at 953.627 kb on - strand, within MIT1002_00867 at 953.663 kb on - strand, within MIT1002_00867 at 953.664 kb on - strand, within MIT1002_00867 at 953.733 kb on - strand, within MIT1002_00867 at 953.755 kb on - strand, within MIT1002_00867 at 953.837 kb on - strand, within MIT1002_00867 at 953.892 kb on + strand, within MIT1002_00867 at 953.892 kb on + strand, within MIT1002_00867 at 953.900 kb on - strand, within MIT1002_00867 at 953.925 kb on + strand, within MIT1002_00867 at 953.963 kb on + strand, within MIT1002_00867 at 953.984 kb on - strand, within MIT1002_00867 at 953.984 kb on - strand, within MIT1002_00867 at 954.014 kb on + strand, within MIT1002_00867 at 954.014 kb on + strand, within MIT1002_00867 at 954.022 kb on - strand, within MIT1002_00867 at 954.022 kb on - strand, within MIT1002_00867 at 954.022 kb on - strand, within MIT1002_00867 at 954.038 kb on + strand, within MIT1002_00867 at 954.046 kb on - strand, within MIT1002_00867 at 954.051 kb on - strand, within MIT1002_00867 at 954.053 kb on - strand, within MIT1002_00867 at 954.126 kb on + strand, within MIT1002_00867 at 954.209 kb on + strand, within MIT1002_00867 at 954.209 kb on + strand, within MIT1002_00867 at 954.209 kb on + strand, within MIT1002_00867 at 954.209 kb on + strand, within MIT1002_00867 at 954.217 kb on - strand, within MIT1002_00867 at 954.217 kb on - strand, within MIT1002_00867 at 954.217 kb on - strand, within MIT1002_00867 at 954.217 kb on - strand, within MIT1002_00867 at 954.217 kb on - strand, within MIT1002_00867 at 954.217 kb on - strand, within MIT1002_00867 at 954.221 kb on + strand, within MIT1002_00867 at 954.224 kb on - strand, within MIT1002_00867 at 954.229 kb on - strand, within MIT1002_00867 at 954.368 kb on + strand, within MIT1002_00867 at 954.376 kb on - strand, within MIT1002_00867 at 954.376 kb on - strand, within MIT1002_00867 at 954.401 kb on + strand, within MIT1002_00867 at 954.455 kb on - strand, within MIT1002_00867 at 954.459 kb on + strand, within MIT1002_00867 at 954.481 kb on + strand, within MIT1002_00867 at 954.489 kb on - strand, within MIT1002_00867 at 954.512 kb on - strand, within MIT1002_00867 at 954.534 kb on - strand, within MIT1002_00867 at 954.610 kb on - strand, within MIT1002_00867 at 954.653 kb on + strand, within MIT1002_00867 at 954.705 kb on + strand, within MIT1002_00867 at 954.728 kb on + strand, within MIT1002_00867 at 954.763 kb on + strand, within MIT1002_00867 at 954.809 kb on + strand, within MIT1002_00867 at 954.908 kb on - strand, within MIT1002_00867 at 954.961 kb on - strand, within MIT1002_00867 at 954.978 kb on - strand, within MIT1002_00867 at 955.081 kb on - strand, within MIT1002_00867 at 955.125 kb on + strand, within MIT1002_00867 at 955.127 kb on - strand, within MIT1002_00867 at 955.153 kb on - strand, within MIT1002_00867 at 955.155 kb on + strand, within MIT1002_00867 at 955.155 kb on + strand, within MIT1002_00867 at 955.188 kb on + strand, within MIT1002_00867 at 955.202 kb on - strand, within MIT1002_00867 at 955.224 kb on + strand, within MIT1002_00867 at 955.224 kb on + strand, within MIT1002_00867 at 955.232 kb on - strand, within MIT1002_00867 at 955.232 kb on - strand, within MIT1002_00867 at 955.234 kb on + strand, within MIT1002_00867 at 955.234 kb on + strand, within MIT1002_00867 at 955.234 kb on + strand, within MIT1002_00867 at 955.234 kb on + strand, within MIT1002_00867 at 955.236 kb on + strand, within MIT1002_00867 at 955.242 kb on - strand, within MIT1002_00867 at 955.242 kb on - strand, within MIT1002_00867 at 955.242 kb on - strand, within MIT1002_00867 at 955.288 kb on - strand, within MIT1002_00867 at 955.299 kb on + strand, within MIT1002_00867 at 955.335 kb on + strand, within MIT1002_00867 at 955.383 kb on - strand, within MIT1002_00867 at 955.408 kb on + strand, within MIT1002_00867 at 955.418 kb on - strand, within MIT1002_00867 at 955.430 kb on - strand, within MIT1002_00867 at 955.490 kb on + strand, within MIT1002_00867 at 955.490 kb on + strand, within MIT1002_00867 at 955.602 kb on + strand, within MIT1002_00867 at 955.770 kb on + strand at 955.773 kb on - strand at 955.780 kb on + strand at 955.799 kb on + strand at 955.836 kb on + strand at 955.903 kb on + strand at 955.950 kb on + strand at 955.950 kb on + strand at 955.950 kb on + strand at 955.955 kb on + strand at 955.962 kb on + strand at 955.981 kb on + strand at 955.984 kb on - strand at 955.989 kb on - strand at 955.989 kb on - strand at 955.989 kb on - strand at 955.989 kb on - strand at 955.994 kb on - strand at 955.994 kb on - strand at 955.994 kb on - strand at 955.994 kb on - strand at 956.014 kb on + strand at 956.021 kb on - strand at 956.031 kb on - strand at 956.090 kb on - strand, within MIT1002_00868 at 956.090 kb on - strand, within MIT1002_00868 at 956.132 kb on - strand, within MIT1002_00868 at 956.141 kb on - strand, within MIT1002_00868 at 956.173 kb on - strand, within MIT1002_00868 at 956.175 kb on + strand, within MIT1002_00868 at 956.225 kb on + strand, within MIT1002_00868 at 956.233 kb on - strand, within MIT1002_00868 at 956.262 kb on + strand, within MIT1002_00868 at 956.335 kb on - strand, within MIT1002_00868 at 956.373 kb on + strand, within MIT1002_00868 at 956.382 kb on - strand, within MIT1002_00868 at 956.430 kb on - strand, within MIT1002_00868 at 956.441 kb on - strand, within MIT1002_00868 at 956.450 kb on + strand, within MIT1002_00868 at 956.503 kb on + strand, within MIT1002_00868 at 956.523 kb on + strand, within MIT1002_00868 at 956.583 kb on + strand, within MIT1002_00868 at 956.584 kb on + strand, within MIT1002_00868 at 956.584 kb on + strand, within MIT1002_00868 at 956.592 kb on - strand, within MIT1002_00868 at 956.609 kb on - strand, within MIT1002_00868 at 956.727 kb on + strand, within MIT1002_00868 at 956.751 kb on + strand, within MIT1002_00868 at 956.759 kb on - strand, within MIT1002_00868 at 956.780 kb on - strand, within MIT1002_00868 at 956.788 kb on - strand, within MIT1002_00868 at 956.788 kb on - strand, within MIT1002_00868 at 956.788 kb on - strand, within MIT1002_00868 at 956.793 kb on - strand, within MIT1002_00868 at 956.805 kb on - strand, within MIT1002_00868 at 956.816 kb on + strand, within MIT1002_00868 at 956.816 kb on + strand, within MIT1002_00868 at 956.816 kb on + strand, within MIT1002_00868 at 956.816 kb on + strand, within MIT1002_00868 at 956.816 kb on + strand, within MIT1002_00868 at 956.824 kb on - strand, within MIT1002_00868 at 956.824 kb on - strand, within MIT1002_00868 at 956.831 kb on + strand, within MIT1002_00868 at 956.831 kb on - strand, within MIT1002_00868
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6 remove 951,794 + MIT1002_00866 0.14 +1.6 951,806 - MIT1002_00866 0.15 -0.0 951,814 - MIT1002_00866 0.16 -0.5 951,845 + MIT1002_00866 0.19 +1.7 951,878 + MIT1002_00866 0.22 +0.4 951,878 + MIT1002_00866 0.22 -0.8 951,892 + MIT1002_00866 0.23 +0.7 951,931 + MIT1002_00866 0.27 +0.6 951,931 + MIT1002_00866 0.27 +3.5 951,931 + MIT1002_00866 0.27 +0.7 951,939 - MIT1002_00866 0.27 +0.7 951,939 - MIT1002_00866 0.27 +1.7 951,939 - MIT1002_00866 0.27 +1.7 952,065 - MIT1002_00866 0.39 +0.0 952,077 + MIT1002_00866 0.40 +0.8 952,085 - MIT1002_00866 0.41 +1.4 952,149 + MIT1002_00866 0.47 +0.4 952,217 + MIT1002_00866 0.53 +0.5 952,225 - MIT1002_00866 0.54 -1.2 952,241 + MIT1002_00866 0.55 -0.1 952,252 + MIT1002_00866 0.56 +0.9 952,252 + MIT1002_00866 0.56 -0.1 952,252 + MIT1002_00866 0.56 +0.4 952,252 + MIT1002_00866 0.56 -1.2 952,260 - MIT1002_00866 0.57 -0.0 952,260 - MIT1002_00866 0.57 -0.8 952,260 - MIT1002_00866 0.57 +0.8 952,260 - MIT1002_00866 0.57 -0.0 952,260 - MIT1002_00866 0.57 +0.4 952,281 - MIT1002_00866 0.59 +0.4 952,288 - MIT1002_00866 0.59 -0.3 952,289 + MIT1002_00866 0.59 +0.2 952,310 + MIT1002_00866 0.61 +1.8 952,321 + MIT1002_00866 0.62 +0.4 952,329 - MIT1002_00866 0.63 +1.5 952,329 - MIT1002_00866 0.63 +1.6 952,383 - MIT1002_00866 0.68 -2.4 952,403 - MIT1002_00866 0.70 -0.9 952,431 - MIT1002_00866 0.73 -0.7 952,530 - MIT1002_00866 0.82 +2.0 952,565 - MIT1002_00866 0.85 +0.4 952,576 - MIT1002_00866 0.86 -0.8 952,612 - MIT1002_00866 0.89 -2.9 952,612 - MIT1002_00866 0.89 +0.5 952,678 - -2.4 952,678 - -0.0 952,723 + -1.0 952,723 + +0.6 952,723 + -0.5 952,723 + -0.3 952,723 + -0.5 952,723 + +0.8 952,731 - +0.3 952,731 - -0.1 952,731 - +2.9 952,816 + +0.9 952,832 + -0.2 952,878 + +0.6 952,886 - -1.0 952,923 + +0.0 952,931 - +0.6 952,936 - -0.7 953,013 - -0.9 953,091 + MIT1002_00867 0.11 +0.5 953,091 + MIT1002_00867 0.11 -0.8 953,096 + MIT1002_00867 0.11 +0.7 953,099 - MIT1002_00867 0.11 +0.2 953,099 - MIT1002_00867 0.11 -0.8 953,114 - MIT1002_00867 0.12 -1.1 953,122 - MIT1002_00867 0.12 +1.0 953,130 + MIT1002_00867 0.12 -2.1 953,131 + MIT1002_00867 0.12 -0.4 953,256 - MIT1002_00867 0.16 +0.4 953,393 - MIT1002_00867 0.21 -1.1 953,405 + MIT1002_00867 0.21 -0.3 953,432 - MIT1002_00867 0.22 +0.7 953,614 + MIT1002_00867 0.27 +1.0 953,627 - MIT1002_00867 0.28 +2.0 953,663 - MIT1002_00867 0.29 -1.5 953,664 - MIT1002_00867 0.29 +1.9 953,733 - MIT1002_00867 0.31 +1.1 953,755 - MIT1002_00867 0.32 +0.7 953,837 - MIT1002_00867 0.34 -2.9 953,892 + MIT1002_00867 0.36 -0.3 953,892 + MIT1002_00867 0.36 -0.6 953,900 - MIT1002_00867 0.36 +1.0 953,925 + MIT1002_00867 0.37 -1.4 953,963 + MIT1002_00867 0.38 -1.4 953,984 - MIT1002_00867 0.39 -1.5 953,984 - MIT1002_00867 0.39 +0.1 954,014 + MIT1002_00867 0.40 +1.4 954,014 + MIT1002_00867 0.40 -1.1 954,022 - MIT1002_00867 0.40 +0.1 954,022 - MIT1002_00867 0.40 +1.4 954,022 - MIT1002_00867 0.40 +0.1 954,038 + MIT1002_00867 0.41 +0.2 954,046 - MIT1002_00867 0.41 +0.4 954,051 - MIT1002_00867 0.41 -0.4 954,053 - MIT1002_00867 0.41 -0.5 954,126 + MIT1002_00867 0.44 -1.4 954,209 + MIT1002_00867 0.46 -0.7 954,209 + MIT1002_00867 0.46 +1.3 954,209 + MIT1002_00867 0.46 -1.3 954,209 + MIT1002_00867 0.46 -0.6 954,217 - MIT1002_00867 0.46 -1.2 954,217 - MIT1002_00867 0.46 -0.3 954,217 - MIT1002_00867 0.46 +1.0 954,217 - MIT1002_00867 0.46 -0.6 954,217 - MIT1002_00867 0.46 -0.6 954,217 - MIT1002_00867 0.46 +0.6 954,221 + MIT1002_00867 0.47 -0.7 954,224 - MIT1002_00867 0.47 -0.1 954,229 - MIT1002_00867 0.47 +0.9 954,368 + MIT1002_00867 0.51 -0.1 954,376 - MIT1002_00867 0.51 +1.3 954,376 - MIT1002_00867 0.51 -0.0 954,401 + MIT1002_00867 0.52 +1.0 954,455 - MIT1002_00867 0.54 +0.1 954,459 + MIT1002_00867 0.54 -2.4 954,481 + MIT1002_00867 0.55 -1.3 954,489 - MIT1002_00867 0.55 +1.1 954,512 - MIT1002_00867 0.56 +1.7 954,534 - MIT1002_00867 0.56 -2.5 954,610 - MIT1002_00867 0.59 -3.2 954,653 + MIT1002_00867 0.60 +0.5 954,705 + MIT1002_00867 0.62 -0.0 954,728 + MIT1002_00867 0.62 +1.5 954,763 + MIT1002_00867 0.64 -0.8 954,809 + MIT1002_00867 0.65 -1.9 954,908 - MIT1002_00867 0.68 +1.1 954,961 - MIT1002_00867 0.70 -0.1 954,978 - MIT1002_00867 0.70 +0.4 955,081 - MIT1002_00867 0.74 -1.5 955,125 + MIT1002_00867 0.75 +0.5 955,127 - MIT1002_00867 0.75 -3.9 955,153 - MIT1002_00867 0.76 +0.1 955,155 + MIT1002_00867 0.76 -0.4 955,155 + MIT1002_00867 0.76 -1.8 955,188 + MIT1002_00867 0.77 +0.2 955,202 - MIT1002_00867 0.77 -0.5 955,224 + MIT1002_00867 0.78 -0.9 955,224 + MIT1002_00867 0.78 -0.3 955,232 - MIT1002_00867 0.78 +1.2 955,232 - MIT1002_00867 0.78 -0.6 955,234 + MIT1002_00867 0.78 +0.6 955,234 + MIT1002_00867 0.78 +1.1 955,234 + MIT1002_00867 0.78 -1.2 955,234 + MIT1002_00867 0.78 +1.1 955,236 + MIT1002_00867 0.78 +0.1 955,242 - MIT1002_00867 0.79 +1.5 955,242 - MIT1002_00867 0.79 +0.3 955,242 - MIT1002_00867 0.79 +1.4 955,288 - MIT1002_00867 0.80 +0.2 955,299 + MIT1002_00867 0.80 +0.0 955,335 + MIT1002_00867 0.82 -0.8 955,383 - MIT1002_00867 0.83 +0.5 955,408 + MIT1002_00867 0.84 -2.2 955,418 - MIT1002_00867 0.84 +1.6 955,430 - MIT1002_00867 0.84 -2.3 955,490 + MIT1002_00867 0.86 +0.2 955,490 + MIT1002_00867 0.86 -0.2 955,602 + MIT1002_00867 0.90 -0.6 955,770 + -2.4 955,773 - +1.8 955,780 + -0.0 955,799 + +0.4 955,836 + -0.2 955,903 + +2.9 955,950 + -1.1 955,950 + +0.1 955,950 + +0.0 955,955 + +0.7 955,962 + +1.1 955,981 + +0.7 955,984 - -1.1 955,989 - -1.2 955,989 - -0.1 955,989 - -1.5 955,989 - -3.3 955,994 - -1.3 955,994 - +0.7 955,994 - -0.4 955,994 - -0.5 956,014 + +0.9 956,021 - -0.5 956,031 - -2.2 956,090 - MIT1002_00868 0.12 -1.1 956,090 - MIT1002_00868 0.12 -0.0 956,132 - MIT1002_00868 0.15 -0.6 956,141 - MIT1002_00868 0.15 +0.6 956,173 - MIT1002_00868 0.18 +0.7 956,175 + MIT1002_00868 0.18 -0.8 956,225 + MIT1002_00868 0.21 +0.6 956,233 - MIT1002_00868 0.22 +1.0 956,262 + MIT1002_00868 0.24 -0.4 956,335 - MIT1002_00868 0.29 -0.2 956,373 + MIT1002_00868 0.31 +0.4 956,382 - MIT1002_00868 0.32 +0.6 956,430 - MIT1002_00868 0.35 +1.0 956,441 - MIT1002_00868 0.36 -2.9 956,450 + MIT1002_00868 0.36 +0.4 956,503 + MIT1002_00868 0.40 -2.3 956,523 + MIT1002_00868 0.41 -0.1 956,583 + MIT1002_00868 0.45 +1.5 956,584 + MIT1002_00868 0.45 +0.7 956,584 + MIT1002_00868 0.45 +2.1 956,592 - MIT1002_00868 0.46 -2.5 956,609 - MIT1002_00868 0.47 +2.2 956,727 + MIT1002_00868 0.55 +2.4 956,751 + MIT1002_00868 0.57 -1.7 956,759 - MIT1002_00868 0.57 -0.6 956,780 - MIT1002_00868 0.59 -0.5 956,788 - MIT1002_00868 0.59 +1.0 956,788 - MIT1002_00868 0.59 +2.5 956,788 - MIT1002_00868 0.59 +0.8 956,793 - MIT1002_00868 0.59 -1.8 956,805 - MIT1002_00868 0.60 +1.8 956,816 + MIT1002_00868 0.61 +0.6 956,816 + MIT1002_00868 0.61 -0.8 956,816 + MIT1002_00868 0.61 +2.0 956,816 + MIT1002_00868 0.61 -2.3 956,816 + MIT1002_00868 0.61 +0.1 956,824 - MIT1002_00868 0.62 +0.1 956,824 - MIT1002_00868 0.62 +0.0 956,831 + MIT1002_00868 0.62 +0.8 956,831 - MIT1002_00868 0.62 -0.2
Or see this region's nucleotide sequence