Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00791 and MIT1002_00792 are separated by 27 nucleotides MIT1002_00792 and MIT1002_00793 are separated by 101 nucleotides MIT1002_00793 and MIT1002_00794 are separated by 12 nucleotides
MIT1002_00791: MIT1002_00791 - Pyridoxine 5'-phosphate synthase, at 876,433 to 877,170
_00791
MIT1002_00792: MIT1002_00792 - Holo-[acyl-carrier-protein] synthase, at 877,198 to 877,578
_00792
MIT1002_00793: MIT1002_00793 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 877,680 to 879,122
_00793
MIT1002_00794: MIT1002_00794 - GTP pyrophosphokinase, at 879,135 to 881,318
_00794
Position (kb) 877
878
879
880 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 877.186 kb on + strand at 877.186 kb on + strand at 877.568 kb on + strand at 877.568 kb on + strand at 877.587 kb on + strand at 877.595 kb on - strand at 877.666 kb on - strand at 877.679 kb on - strand at 877.689 kb on - strand at 877.689 kb on - strand at 877.711 kb on + strand at 877.711 kb on + strand at 877.719 kb on - strand at 877.763 kb on + strand at 877.763 kb on + strand at 877.763 kb on - strand at 877.771 kb on - strand at 877.771 kb on - strand at 877.831 kb on - strand, within MIT1002_00793 at 877.853 kb on - strand, within MIT1002_00793 at 877.866 kb on + strand, within MIT1002_00793 at 877.872 kb on + strand, within MIT1002_00793 at 877.874 kb on - strand, within MIT1002_00793 at 877.935 kb on + strand, within MIT1002_00793 at 878.057 kb on + strand, within MIT1002_00793 at 878.064 kb on - strand, within MIT1002_00793 at 878.068 kb on + strand, within MIT1002_00793 at 878.074 kb on + strand, within MIT1002_00793 at 878.081 kb on - strand, within MIT1002_00793 at 878.084 kb on + strand, within MIT1002_00793 at 878.089 kb on + strand, within MIT1002_00793 at 878.095 kb on + strand, within MIT1002_00793 at 878.095 kb on - strand, within MIT1002_00793 at 878.097 kb on + strand, within MIT1002_00793 at 878.131 kb on + strand, within MIT1002_00793 at 878.151 kb on + strand, within MIT1002_00793 at 878.155 kb on + strand, within MIT1002_00793 at 878.195 kb on + strand, within MIT1002_00793 at 878.203 kb on - strand, within MIT1002_00793 at 878.203 kb on - strand, within MIT1002_00793 at 878.212 kb on + strand, within MIT1002_00793 at 878.268 kb on + strand, within MIT1002_00793 at 878.278 kb on + strand, within MIT1002_00793 at 878.278 kb on + strand, within MIT1002_00793 at 878.286 kb on - strand, within MIT1002_00793 at 878.286 kb on - strand, within MIT1002_00793 at 878.317 kb on + strand, within MIT1002_00793 at 878.337 kb on + strand, within MIT1002_00793 at 878.337 kb on - strand, within MIT1002_00793 at 878.339 kb on + strand, within MIT1002_00793 at 878.339 kb on + strand, within MIT1002_00793 at 878.345 kb on - strand, within MIT1002_00793 at 878.347 kb on - strand, within MIT1002_00793 at 878.364 kb on - strand, within MIT1002_00793 at 878.371 kb on + strand, within MIT1002_00793 at 878.392 kb on - strand, within MIT1002_00793 at 878.422 kb on - strand, within MIT1002_00793 at 878.422 kb on - strand, within MIT1002_00793 at 878.423 kb on + strand, within MIT1002_00793 at 878.438 kb on + strand, within MIT1002_00793 at 878.441 kb on - strand, within MIT1002_00793 at 878.574 kb on - strand, within MIT1002_00793 at 878.576 kb on - strand, within MIT1002_00793 at 878.673 kb on - strand, within MIT1002_00793 at 878.673 kb on - strand, within MIT1002_00793 at 878.673 kb on - strand, within MIT1002_00793 at 878.740 kb on + strand, within MIT1002_00793 at 878.748 kb on - strand, within MIT1002_00793 at 878.762 kb on + strand, within MIT1002_00793 at 878.861 kb on + strand, within MIT1002_00793 at 878.893 kb on + strand, within MIT1002_00793 at 878.894 kb on + strand, within MIT1002_00793 at 878.902 kb on - strand, within MIT1002_00793 at 878.902 kb on - strand, within MIT1002_00793 at 878.906 kb on + strand, within MIT1002_00793 at 878.914 kb on - strand, within MIT1002_00793 at 879.014 kb on + strand at 879.015 kb on + strand at 879.063 kb on + strand at 879.081 kb on - strand at 879.131 kb on + strand at 879.139 kb on - strand at 879.139 kb on - strand at 879.155 kb on + strand at 879.155 kb on + strand at 879.160 kb on - strand at 879.163 kb on - strand at 879.164 kb on + strand at 879.183 kb on - strand at 879.194 kb on - strand at 879.196 kb on + strand at 879.240 kb on - strand at 879.254 kb on - strand at 879.305 kb on + strand at 879.325 kb on - strand at 879.335 kb on - strand at 879.335 kb on - strand at 879.351 kb on + strand at 879.351 kb on - strand at 879.359 kb on - strand, within MIT1002_00794 at 879.366 kb on - strand, within MIT1002_00794 at 879.366 kb on - strand, within MIT1002_00794 at 879.470 kb on - strand, within MIT1002_00794 at 879.488 kb on - strand, within MIT1002_00794 at 879.511 kb on + strand, within MIT1002_00794 at 879.544 kb on - strand, within MIT1002_00794 at 879.578 kb on + strand, within MIT1002_00794 at 879.596 kb on + strand, within MIT1002_00794 at 879.604 kb on - strand, within MIT1002_00794 at 879.622 kb on + strand, within MIT1002_00794 at 879.687 kb on - strand, within MIT1002_00794 at 879.702 kb on + strand, within MIT1002_00794 at 879.710 kb on - strand, within MIT1002_00794 at 879.724 kb on + strand, within MIT1002_00794 at 879.724 kb on + strand, within MIT1002_00794 at 879.732 kb on - strand, within MIT1002_00794 at 879.734 kb on - strand, within MIT1002_00794 at 879.794 kb on - strand, within MIT1002_00794 at 879.945 kb on + strand, within MIT1002_00794 at 879.966 kb on + strand, within MIT1002_00794 at 879.974 kb on + strand, within MIT1002_00794 at 880.048 kb on + strand, within MIT1002_00794 at 880.049 kb on + strand, within MIT1002_00794 at 880.055 kb on + strand, within MIT1002_00794 at 880.091 kb on - strand, within MIT1002_00794 at 880.091 kb on - strand, within MIT1002_00794
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6 remove 877,186 + -0.6 877,186 + +0.2 877,568 + -1.7 877,568 + +0.1 877,587 + +0.9 877,595 - +2.0 877,666 - +0.9 877,679 - -1.5 877,689 - +2.6 877,689 - -0.9 877,711 + -0.3 877,711 + +1.0 877,719 - -0.9 877,763 + +0.4 877,763 + +0.3 877,763 - +1.3 877,771 - +0.1 877,771 - -0.3 877,831 - MIT1002_00793 0.10 -0.6 877,853 - MIT1002_00793 0.12 -0.1 877,866 + MIT1002_00793 0.13 -0.1 877,872 + MIT1002_00793 0.13 -0.1 877,874 - MIT1002_00793 0.13 -0.5 877,935 + MIT1002_00793 0.18 +0.8 878,057 + MIT1002_00793 0.26 +0.4 878,064 - MIT1002_00793 0.27 -0.1 878,068 + MIT1002_00793 0.27 +0.4 878,074 + MIT1002_00793 0.27 +0.8 878,081 - MIT1002_00793 0.28 +1.7 878,084 + MIT1002_00793 0.28 +0.8 878,089 + MIT1002_00793 0.28 +0.8 878,095 + MIT1002_00793 0.29 +0.3 878,095 - MIT1002_00793 0.29 +1.4 878,097 + MIT1002_00793 0.29 +0.7 878,131 + MIT1002_00793 0.31 -0.7 878,151 + MIT1002_00793 0.33 +0.1 878,155 + MIT1002_00793 0.33 +0.2 878,195 + MIT1002_00793 0.36 +2.2 878,203 - MIT1002_00793 0.36 +0.7 878,203 - MIT1002_00793 0.36 +2.0 878,212 + MIT1002_00793 0.37 -2.8 878,268 + MIT1002_00793 0.41 +1.1 878,278 + MIT1002_00793 0.41 -1.1 878,278 + MIT1002_00793 0.41 +0.0 878,286 - MIT1002_00793 0.42 +0.9 878,286 - MIT1002_00793 0.42 +0.7 878,317 + MIT1002_00793 0.44 -1.3 878,337 + MIT1002_00793 0.46 +2.1 878,337 - MIT1002_00793 0.46 +1.1 878,339 + MIT1002_00793 0.46 -0.2 878,339 + MIT1002_00793 0.46 +1.7 878,345 - MIT1002_00793 0.46 -0.8 878,347 - MIT1002_00793 0.46 +0.5 878,364 - MIT1002_00793 0.47 +1.5 878,371 + MIT1002_00793 0.48 -1.0 878,392 - MIT1002_00793 0.49 -2.0 878,422 - MIT1002_00793 0.51 -0.2 878,422 - MIT1002_00793 0.51 +0.0 878,423 + MIT1002_00793 0.51 +0.7 878,438 + MIT1002_00793 0.53 +1.7 878,441 - MIT1002_00793 0.53 +0.0 878,574 - MIT1002_00793 0.62 -1.6 878,576 - MIT1002_00793 0.62 -2.5 878,673 - MIT1002_00793 0.69 -0.2 878,673 - MIT1002_00793 0.69 +0.7 878,673 - MIT1002_00793 0.69 +1.1 878,740 + MIT1002_00793 0.73 +0.9 878,748 - MIT1002_00793 0.74 -0.1 878,762 + MIT1002_00793 0.75 +0.2 878,861 + MIT1002_00793 0.82 -0.2 878,893 + MIT1002_00793 0.84 +0.2 878,894 + MIT1002_00793 0.84 -2.2 878,902 - MIT1002_00793 0.85 +0.2 878,902 - MIT1002_00793 0.85 +0.1 878,906 + MIT1002_00793 0.85 +1.0 878,914 - MIT1002_00793 0.86 -1.4 879,014 + +1.3 879,015 + +1.4 879,063 + -1.1 879,081 - +1.0 879,131 + -0.3 879,139 - -1.0 879,139 - -0.1 879,155 + -0.7 879,155 + +0.4 879,160 - -1.0 879,163 - -2.8 879,164 + -0.3 879,183 - -0.6 879,194 - -1.5 879,196 + -1.7 879,240 - +0.1 879,254 - -0.4 879,305 + +0.4 879,325 - -0.5 879,335 - +0.3 879,335 - +0.7 879,351 + +0.2 879,351 - -0.5 879,359 - MIT1002_00794 0.10 -1.5 879,366 - MIT1002_00794 0.11 +0.4 879,366 - MIT1002_00794 0.11 +1.1 879,470 - MIT1002_00794 0.15 -3.6 879,488 - MIT1002_00794 0.16 -0.5 879,511 + MIT1002_00794 0.17 -0.4 879,544 - MIT1002_00794 0.19 +1.3 879,578 + MIT1002_00794 0.20 -0.8 879,596 + MIT1002_00794 0.21 -0.6 879,604 - MIT1002_00794 0.21 +2.1 879,622 + MIT1002_00794 0.22 +1.0 879,687 - MIT1002_00794 0.25 +1.1 879,702 + MIT1002_00794 0.26 -1.7 879,710 - MIT1002_00794 0.26 +0.5 879,724 + MIT1002_00794 0.27 -0.3 879,724 + MIT1002_00794 0.27 -1.9 879,732 - MIT1002_00794 0.27 -2.0 879,734 - MIT1002_00794 0.27 +0.6 879,794 - MIT1002_00794 0.30 +1.0 879,945 + MIT1002_00794 0.37 +2.1 879,966 + MIT1002_00794 0.38 +2.0 879,974 + MIT1002_00794 0.38 -0.5 880,048 + MIT1002_00794 0.42 -0.7 880,049 + MIT1002_00794 0.42 -0.6 880,055 + MIT1002_00794 0.42 +0.4 880,091 - MIT1002_00794 0.44 +0.7 880,091 - MIT1002_00794 0.44 -0.5
Or see this region's nucleotide sequence