Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00765

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00764 and MIT1002_00765 are separated by 137 nucleotidesMIT1002_00765 and MIT1002_00766 are separated by 112 nucleotidesMIT1002_00766 and MIT1002_00767 are separated by 117 nucleotides MIT1002_00764: MIT1002_00764 - Signal transduction histidine-protein kinase BarA, at 839,649 to 842,276 _00764 MIT1002_00765: MIT1002_00765 - Long-chain-fatty-acid--CoA ligase, at 842,414 to 843,982 _00765 MIT1002_00766: MIT1002_00766 - hypothetical protein, at 844,095 to 844,568 _00766 MIT1002_00767: MIT1002_00767 - Soluble aldose sugar dehydrogenase YliI precursor, at 844,686 to 845,912 _00767 Position (kb) 842 843 844Strain fitness (log2 ratio) -2 -1 0 1 2 3at 841.493 kb on + strand, within MIT1002_00764at 841.494 kb on + strand, within MIT1002_00764at 841.495 kb on + strand, within MIT1002_00764at 841.495 kb on + strand, within MIT1002_00764at 841.503 kb on - strand, within MIT1002_00764at 841.503 kb on - strand, within MIT1002_00764at 841.577 kb on + strand, within MIT1002_00764at 841.577 kb on + strand, within MIT1002_00764at 841.582 kb on - strand, within MIT1002_00764at 841.584 kb on - strand, within MIT1002_00764at 841.585 kb on - strand, within MIT1002_00764at 841.585 kb on - strand, within MIT1002_00764at 841.707 kb on + strand, within MIT1002_00764at 841.817 kb on - strand, within MIT1002_00764at 841.836 kb on + strand, within MIT1002_00764at 841.896 kb on - strand, within MIT1002_00764at 841.909 kb on + strand, within MIT1002_00764at 841.909 kb on + strand, within MIT1002_00764at 841.909 kb on + strand, within MIT1002_00764at 841.909 kb on + strand, within MIT1002_00764at 841.909 kb on + strand, within MIT1002_00764at 841.909 kb on + strand, within MIT1002_00764at 841.909 kb on + strand, within MIT1002_00764at 841.909 kb on + strand, within MIT1002_00764at 841.917 kb on - strand, within MIT1002_00764at 841.917 kb on - strand, within MIT1002_00764at 841.917 kb on - strand, within MIT1002_00764at 841.917 kb on - strand, within MIT1002_00764at 841.917 kb on - strand, within MIT1002_00764at 841.917 kb on - strand, within MIT1002_00764at 841.917 kb on - strand, within MIT1002_00764at 841.917 kb on - strand, within MIT1002_00764at 841.939 kb on - strand, within MIT1002_00764at 841.965 kb on - strand, within MIT1002_00764at 842.038 kb on - strandat 842.072 kb on + strandat 842.130 kb on + strandat 842.156 kb on + strandat 842.258 kb on - strandat 842.268 kb on - strandat 842.271 kb on + strandat 842.271 kb on + strandat 842.396 kb on + strandat 842.411 kb on + strandat 842.488 kb on + strandat 842.545 kb on - strandat 842.664 kb on - strand, within MIT1002_00765at 842.704 kb on + strand, within MIT1002_00765at 842.738 kb on - strand, within MIT1002_00765at 842.777 kb on + strand, within MIT1002_00765at 842.783 kb on + strand, within MIT1002_00765at 842.825 kb on - strand, within MIT1002_00765at 842.839 kb on - strand, within MIT1002_00765at 842.839 kb on - strand, within MIT1002_00765at 842.917 kb on + strand, within MIT1002_00765at 842.993 kb on - strand, within MIT1002_00765at 842.995 kb on + strand, within MIT1002_00765at 843.004 kb on - strand, within MIT1002_00765at 843.004 kb on - strand, within MIT1002_00765at 843.009 kb on + strand, within MIT1002_00765at 843.147 kb on + strand, within MIT1002_00765at 843.147 kb on + strand, within MIT1002_00765at 843.155 kb on - strand, within MIT1002_00765at 843.155 kb on - strand, within MIT1002_00765at 843.155 kb on - strand, within MIT1002_00765at 843.263 kb on + strand, within MIT1002_00765at 843.340 kb on + strand, within MIT1002_00765at 843.389 kb on + strand, within MIT1002_00765at 843.389 kb on + strand, within MIT1002_00765at 843.397 kb on - strand, within MIT1002_00765at 843.412 kb on + strand, within MIT1002_00765at 843.412 kb on + strand, within MIT1002_00765at 843.414 kb on - strand, within MIT1002_00765at 843.423 kb on - strand, within MIT1002_00765at 843.462 kb on + strand, within MIT1002_00765at 843.462 kb on + strand, within MIT1002_00765at 843.487 kb on + strand, within MIT1002_00765at 843.487 kb on + strand, within MIT1002_00765at 843.495 kb on - strand, within MIT1002_00765at 843.495 kb on - strand, within MIT1002_00765at 843.497 kb on - strand, within MIT1002_00765at 843.497 kb on - strand, within MIT1002_00765at 843.499 kb on - strand, within MIT1002_00765at 843.502 kb on - strand, within MIT1002_00765at 843.502 kb on - strand, within MIT1002_00765at 843.546 kb on + strand, within MIT1002_00765at 843.546 kb on + strand, within MIT1002_00765at 843.546 kb on + strand, within MIT1002_00765at 843.554 kb on - strand, within MIT1002_00765at 843.567 kb on + strand, within MIT1002_00765at 843.733 kb on - strand, within MIT1002_00765at 843.737 kb on + strand, within MIT1002_00765at 843.737 kb on + strand, within MIT1002_00765at 843.742 kb on + strand, within MIT1002_00765at 843.755 kb on - strand, within MIT1002_00765at 843.764 kb on - strand, within MIT1002_00765at 843.804 kb on - strand, within MIT1002_00765at 843.839 kb on + strandat 843.839 kb on + strandat 843.847 kb on - strandat 843.847 kb on - strandat 843.852 kb on - strandat 843.998 kb on - strandat 844.144 kb on - strand, within MIT1002_00766at 844.149 kb on - strand, within MIT1002_00766at 844.161 kb on - strand, within MIT1002_00766at 844.172 kb on + strand, within MIT1002_00766at 844.180 kb on - strand, within MIT1002_00766at 844.181 kb on - strand, within MIT1002_00766at 844.183 kb on + strand, within MIT1002_00766at 844.406 kb on - strand, within MIT1002_00766at 844.546 kb on - strandat 844.553 kb on + strandat 844.553 kb on + strandat 844.553 kb on + strandat 844.553 kb on + strandat 844.553 kb on + strandat 844.553 kb on + strandat 844.553 kb on + strandat 844.553 kb on + strandat 844.561 kb on - strandat 844.595 kb on + strandat 844.603 kb on - strandat 844.628 kb on - strandat 844.637 kb on - strandat 844.646 kb on + strandat 844.779 kb on - strandat 844.779 kb on - strandat 844.796 kb on + strandat 844.804 kb on - strandat 844.833 kb on - strand, within MIT1002_00767at 844.862 kb on + strand, within MIT1002_00767at 844.904 kb on + strand, within MIT1002_00767at 844.929 kb on + strand, within MIT1002_00767at 844.937 kb on - strand, within MIT1002_00767at 844.942 kb on + strand, within MIT1002_00767at 844.950 kb on - strand, within MIT1002_00767at 844.950 kb on - strand, within MIT1002_00767at 844.950 kb on - strand, within MIT1002_00767

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6
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841,493 + MIT1002_00764 0.70 -0.2
841,494 + MIT1002_00764 0.70 +0.8
841,495 + MIT1002_00764 0.70 +0.8
841,495 + MIT1002_00764 0.70 -0.2
841,503 - MIT1002_00764 0.71 -0.7
841,503 - MIT1002_00764 0.71 +0.8
841,577 + MIT1002_00764 0.73 +0.6
841,577 + MIT1002_00764 0.73 +0.4
841,582 - MIT1002_00764 0.74 -0.3
841,584 - MIT1002_00764 0.74 -0.0
841,585 - MIT1002_00764 0.74 +3.1
841,585 - MIT1002_00764 0.74 +2.1
841,707 + MIT1002_00764 0.78 +0.1
841,817 - MIT1002_00764 0.82 -0.1
841,836 + MIT1002_00764 0.83 -0.6
841,896 - MIT1002_00764 0.86 -1.6
841,909 + MIT1002_00764 0.86 -0.7
841,909 + MIT1002_00764 0.86 -1.3
841,909 + MIT1002_00764 0.86 +0.4
841,909 + MIT1002_00764 0.86 +0.8
841,909 + MIT1002_00764 0.86 +0.2
841,909 + MIT1002_00764 0.86 -0.0
841,909 + MIT1002_00764 0.86 -1.2
841,909 + MIT1002_00764 0.86 +0.0
841,917 - MIT1002_00764 0.86 +1.8
841,917 - MIT1002_00764 0.86 +1.6
841,917 - MIT1002_00764 0.86 -2.0
841,917 - MIT1002_00764 0.86 +0.6
841,917 - MIT1002_00764 0.86 +0.9
841,917 - MIT1002_00764 0.86 -0.5
841,917 - MIT1002_00764 0.86 +0.3
841,917 - MIT1002_00764 0.86 -0.4
841,939 - MIT1002_00764 0.87 +0.0
841,965 - MIT1002_00764 0.88 +1.1
842,038 - +0.9
842,072 + +0.9
842,130 + +0.1
842,156 + +0.3
842,258 - -0.0
842,268 - +1.0
842,271 + -0.1
842,271 + -0.9
842,396 + -1.8
842,411 + +0.6
842,488 + +0.9
842,545 - -0.6
842,664 - MIT1002_00765 0.16 +0.0
842,704 + MIT1002_00765 0.18 +1.6
842,738 - MIT1002_00765 0.21 -0.1
842,777 + MIT1002_00765 0.23 +0.3
842,783 + MIT1002_00765 0.24 -1.1
842,825 - MIT1002_00765 0.26 +0.4
842,839 - MIT1002_00765 0.27 -0.6
842,839 - MIT1002_00765 0.27 -0.6
842,917 + MIT1002_00765 0.32 -0.0
842,993 - MIT1002_00765 0.37 +0.1
842,995 + MIT1002_00765 0.37 -0.6
843,004 - MIT1002_00765 0.38 +0.4
843,004 - MIT1002_00765 0.38 +1.6
843,009 + MIT1002_00765 0.38 +0.1
843,147 + MIT1002_00765 0.47 +1.6
843,147 + MIT1002_00765 0.47 +0.1
843,155 - MIT1002_00765 0.47 +1.8
843,155 - MIT1002_00765 0.47 -1.1
843,155 - MIT1002_00765 0.47 +0.6
843,263 + MIT1002_00765 0.54 +0.7
843,340 + MIT1002_00765 0.59 +0.1
843,389 + MIT1002_00765 0.62 +1.1
843,389 + MIT1002_00765 0.62 -0.5
843,397 - MIT1002_00765 0.63 +2.6
843,412 + MIT1002_00765 0.64 +0.3
843,412 + MIT1002_00765 0.64 -0.8
843,414 - MIT1002_00765 0.64 +1.3
843,423 - MIT1002_00765 0.64 -0.3
843,462 + MIT1002_00765 0.67 -0.8
843,462 + MIT1002_00765 0.67 -1.1
843,487 + MIT1002_00765 0.68 +2.2
843,487 + MIT1002_00765 0.68 -0.6
843,495 - MIT1002_00765 0.69 -1.1
843,495 - MIT1002_00765 0.69 -1.5
843,497 - MIT1002_00765 0.69 +1.1
843,497 - MIT1002_00765 0.69 +2.7
843,499 - MIT1002_00765 0.69 +1.0
843,502 - MIT1002_00765 0.69 +0.6
843,502 - MIT1002_00765 0.69 +0.3
843,546 + MIT1002_00765 0.72 +0.7
843,546 + MIT1002_00765 0.72 -0.1
843,546 + MIT1002_00765 0.72 +0.1
843,554 - MIT1002_00765 0.73 -0.5
843,567 + MIT1002_00765 0.73 +0.9
843,733 - MIT1002_00765 0.84 +0.4
843,737 + MIT1002_00765 0.84 +2.4
843,737 + MIT1002_00765 0.84 +0.0
843,742 + MIT1002_00765 0.85 -0.9
843,755 - MIT1002_00765 0.85 +0.6
843,764 - MIT1002_00765 0.86 -2.3
843,804 - MIT1002_00765 0.89 -0.5
843,839 + -2.0
843,839 + +0.4
843,847 - -0.9
843,847 - -0.3
843,852 - +1.6
843,998 - -0.2
844,144 - MIT1002_00766 0.10 -0.5
844,149 - MIT1002_00766 0.11 +0.8
844,161 - MIT1002_00766 0.14 +0.7
844,172 + MIT1002_00766 0.16 -1.5
844,180 - MIT1002_00766 0.18 -0.7
844,181 - MIT1002_00766 0.18 -0.0
844,183 + MIT1002_00766 0.19 +0.0
844,406 - MIT1002_00766 0.66 -1.7
844,546 - -0.1
844,553 + -1.5
844,553 + +1.2
844,553 + +0.1
844,553 + +0.3
844,553 + -1.0
844,553 + -0.9
844,553 + +0.7
844,553 + -2.0
844,561 - -0.3
844,595 + +2.1
844,603 - -0.5
844,628 - -0.1
844,637 - -0.6
844,646 + -0.1
844,779 - +0.1
844,779 - +0.9
844,796 + +0.6
844,804 - -0.2
844,833 - MIT1002_00767 0.12 +0.1
844,862 + MIT1002_00767 0.14 +0.6
844,904 + MIT1002_00767 0.18 -0.3
844,929 + MIT1002_00767 0.20 +0.6
844,937 - MIT1002_00767 0.20 -1.0
844,942 + MIT1002_00767 0.21 -1.3
844,950 - MIT1002_00767 0.22 -0.8
844,950 - MIT1002_00767 0.22 +0.6
844,950 - MIT1002_00767 0.22 -1.4

Or see this region's nucleotide sequence