Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00606 and MIT1002_00607 are separated by 8 nucleotides MIT1002_00607 and MIT1002_00608 are separated by 27 nucleotides
MIT1002_00606: MIT1002_00606 - Cation efflux system protein CzcB, at 660,023 to 661,264
_00606
MIT1002_00607: MIT1002_00607 - Cation efflux system protein CzcC, at 661,273 to 662,556
_00607
MIT1002_00608: MIT1002_00608 - heat shock protein HtpX, at 662,584 to 663,579
_00608
Position (kb) 661
662
663 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 660.298 kb on - strand, within MIT1002_00606 at 660.358 kb on + strand, within MIT1002_00606 at 660.358 kb on + strand, within MIT1002_00606 at 660.366 kb on - strand, within MIT1002_00606 at 660.424 kb on + strand, within MIT1002_00606 at 660.489 kb on + strand, within MIT1002_00606 at 660.496 kb on + strand, within MIT1002_00606 at 660.498 kb on + strand, within MIT1002_00606 at 660.558 kb on - strand, within MIT1002_00606 at 660.599 kb on - strand, within MIT1002_00606 at 660.633 kb on - strand, within MIT1002_00606 at 660.636 kb on + strand, within MIT1002_00606 at 660.643 kb on + strand, within MIT1002_00606 at 660.644 kb on - strand, within MIT1002_00606 at 660.714 kb on + strand, within MIT1002_00606 at 660.714 kb on + strand, within MIT1002_00606 at 660.723 kb on - strand, within MIT1002_00606 at 660.760 kb on + strand, within MIT1002_00606 at 660.760 kb on + strand, within MIT1002_00606 at 660.769 kb on + strand, within MIT1002_00606 at 660.822 kb on - strand, within MIT1002_00606 at 660.861 kb on + strand, within MIT1002_00606 at 660.861 kb on + strand, within MIT1002_00606 at 661.033 kb on - strand, within MIT1002_00606 at 661.043 kb on - strand, within MIT1002_00606 at 661.043 kb on - strand, within MIT1002_00606 at 661.117 kb on + strand, within MIT1002_00606 at 661.146 kb on + strand at 661.154 kb on - strand at 661.156 kb on + strand at 661.284 kb on + strand at 661.284 kb on + strand at 661.292 kb on - strand at 661.366 kb on + strand at 661.374 kb on - strand at 661.374 kb on - strand at 661.385 kb on + strand at 661.390 kb on + strand at 661.395 kb on + strand at 661.398 kb on - strand at 661.398 kb on - strand at 661.433 kb on + strand, within MIT1002_00607 at 661.483 kb on + strand, within MIT1002_00607 at 661.483 kb on + strand, within MIT1002_00607 at 661.485 kb on + strand, within MIT1002_00607 at 661.489 kb on - strand, within MIT1002_00607 at 661.521 kb on + strand, within MIT1002_00607 at 661.570 kb on + strand, within MIT1002_00607 at 661.570 kb on + strand, within MIT1002_00607 at 661.578 kb on - strand, within MIT1002_00607 at 661.578 kb on - strand, within MIT1002_00607 at 661.578 kb on - strand, within MIT1002_00607 at 661.582 kb on - strand, within MIT1002_00607 at 661.687 kb on + strand, within MIT1002_00607 at 661.695 kb on - strand, within MIT1002_00607 at 661.697 kb on + strand, within MIT1002_00607 at 661.705 kb on - strand, within MIT1002_00607 at 661.735 kb on - strand, within MIT1002_00607 at 661.754 kb on + strand, within MIT1002_00607 at 661.878 kb on - strand, within MIT1002_00607 at 661.880 kb on + strand, within MIT1002_00607 at 661.880 kb on + strand, within MIT1002_00607 at 661.888 kb on - strand, within MIT1002_00607 at 661.888 kb on - strand, within MIT1002_00607 at 661.888 kb on - strand, within MIT1002_00607 at 661.992 kb on + strand, within MIT1002_00607 at 661.994 kb on + strand, within MIT1002_00607 at 662.023 kb on + strand, within MIT1002_00607 at 662.081 kb on - strand, within MIT1002_00607 at 662.095 kb on - strand, within MIT1002_00607 at 662.105 kb on + strand, within MIT1002_00607 at 662.141 kb on + strand, within MIT1002_00607 at 662.141 kb on + strand, within MIT1002_00607 at 662.149 kb on - strand, within MIT1002_00607 at 662.189 kb on + strand, within MIT1002_00607 at 662.194 kb on + strand, within MIT1002_00607 at 662.209 kb on - strand, within MIT1002_00607 at 662.236 kb on + strand, within MIT1002_00607 at 662.244 kb on - strand, within MIT1002_00607 at 662.244 kb on - strand, within MIT1002_00607 at 662.250 kb on - strand, within MIT1002_00607 at 662.264 kb on + strand, within MIT1002_00607 at 662.269 kb on + strand, within MIT1002_00607 at 662.269 kb on + strand, within MIT1002_00607 at 662.269 kb on + strand, within MIT1002_00607 at 662.269 kb on + strand, within MIT1002_00607 at 662.269 kb on + strand, within MIT1002_00607 at 662.269 kb on + strand, within MIT1002_00607 at 662.269 kb on + strand, within MIT1002_00607 at 662.269 kb on + strand, within MIT1002_00607 at 662.274 kb on + strand, within MIT1002_00607 at 662.276 kb on + strand, within MIT1002_00607 at 662.277 kb on - strand, within MIT1002_00607 at 662.277 kb on - strand, within MIT1002_00607 at 662.277 kb on - strand, within MIT1002_00607 at 662.277 kb on - strand, within MIT1002_00607 at 662.277 kb on - strand, within MIT1002_00607 at 662.277 kb on - strand, within MIT1002_00607 at 662.277 kb on - strand, within MIT1002_00607 at 662.277 kb on - strand, within MIT1002_00607 at 662.277 kb on - strand, within MIT1002_00607 at 662.277 kb on - strand, within MIT1002_00607 at 662.277 kb on - strand, within MIT1002_00607 at 662.282 kb on - strand, within MIT1002_00607 at 662.282 kb on - strand, within MIT1002_00607 at 662.284 kb on - strand, within MIT1002_00607 at 662.287 kb on - strand, within MIT1002_00607 at 662.330 kb on - strand, within MIT1002_00607 at 662.332 kb on + strand, within MIT1002_00607 at 662.340 kb on + strand, within MIT1002_00607 at 662.348 kb on - strand, within MIT1002_00607 at 662.359 kb on - strand, within MIT1002_00607 at 662.417 kb on + strand, within MIT1002_00607 at 662.436 kb on + strand at 662.436 kb on + strand at 662.436 kb on - strand at 662.496 kb on - strand at 662.628 kb on + strand at 662.636 kb on - strand at 662.677 kb on + strand at 662.685 kb on - strand, within MIT1002_00608 at 662.737 kb on + strand, within MIT1002_00608 at 662.737 kb on + strand, within MIT1002_00608 at 662.737 kb on + strand, within MIT1002_00608 at 662.737 kb on + strand, within MIT1002_00608 at 662.745 kb on - strand, within MIT1002_00608 at 662.747 kb on + strand, within MIT1002_00608 at 662.796 kb on - strand, within MIT1002_00608 at 662.799 kb on + strand, within MIT1002_00608 at 662.807 kb on + strand, within MIT1002_00608 at 662.807 kb on - strand, within MIT1002_00608 at 662.854 kb on + strand, within MIT1002_00608 at 662.890 kb on - strand, within MIT1002_00608 at 662.980 kb on - strand, within MIT1002_00608 at 663.042 kb on + strand, within MIT1002_00608 at 663.252 kb on + strand, within MIT1002_00608 at 663.273 kb on + strand, within MIT1002_00608 at 663.355 kb on - strand, within MIT1002_00608 at 663.430 kb on + strand, within MIT1002_00608 at 663.438 kb on - strand, within MIT1002_00608 at 663.531 kb on + strand at 663.536 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6 remove 660,298 - MIT1002_00606 0.22 -0.2 660,358 + MIT1002_00606 0.27 -1.6 660,358 + MIT1002_00606 0.27 -1.1 660,366 - MIT1002_00606 0.28 +1.2 660,424 + MIT1002_00606 0.32 -0.0 660,489 + MIT1002_00606 0.38 -1.7 660,496 + MIT1002_00606 0.38 -1.1 660,498 + MIT1002_00606 0.38 +0.0 660,558 - MIT1002_00606 0.43 -1.5 660,599 - MIT1002_00606 0.46 +0.7 660,633 - MIT1002_00606 0.49 +1.3 660,636 + MIT1002_00606 0.49 -0.1 660,643 + MIT1002_00606 0.50 -0.4 660,644 - MIT1002_00606 0.50 -0.1 660,714 + MIT1002_00606 0.56 -1.4 660,714 + MIT1002_00606 0.56 +0.5 660,723 - MIT1002_00606 0.56 -1.1 660,760 + MIT1002_00606 0.59 +0.0 660,760 + MIT1002_00606 0.59 -0.4 660,769 + MIT1002_00606 0.60 +0.5 660,822 - MIT1002_00606 0.64 +0.7 660,861 + MIT1002_00606 0.67 +2.3 660,861 + MIT1002_00606 0.67 -0.8 661,033 - MIT1002_00606 0.81 -1.7 661,043 - MIT1002_00606 0.82 +0.8 661,043 - MIT1002_00606 0.82 -0.9 661,117 + MIT1002_00606 0.88 -0.3 661,146 + -1.2 661,154 - -4.1 661,156 + +0.2 661,284 + -0.3 661,284 + -1.2 661,292 - +0.1 661,366 + -2.1 661,374 - -1.5 661,374 - -1.1 661,385 + +1.2 661,390 + +1.7 661,395 + +1.5 661,398 - +1.2 661,398 - +0.6 661,433 + MIT1002_00607 0.12 -1.9 661,483 + MIT1002_00607 0.16 -1.5 661,483 + MIT1002_00607 0.16 +0.2 661,485 + MIT1002_00607 0.17 -0.0 661,489 - MIT1002_00607 0.17 +0.6 661,521 + MIT1002_00607 0.19 +0.2 661,570 + MIT1002_00607 0.23 -0.5 661,570 + MIT1002_00607 0.23 -0.5 661,578 - MIT1002_00607 0.24 -0.1 661,578 - MIT1002_00607 0.24 +1.9 661,578 - MIT1002_00607 0.24 -1.0 661,582 - MIT1002_00607 0.24 -0.0 661,687 + MIT1002_00607 0.32 -0.9 661,695 - MIT1002_00607 0.33 -0.4 661,697 + MIT1002_00607 0.33 -0.5 661,705 - MIT1002_00607 0.34 +0.4 661,735 - MIT1002_00607 0.36 +0.7 661,754 + MIT1002_00607 0.37 -0.1 661,878 - MIT1002_00607 0.47 +0.3 661,880 + MIT1002_00607 0.47 -1.1 661,880 + MIT1002_00607 0.47 +0.9 661,888 - MIT1002_00607 0.48 +0.2 661,888 - MIT1002_00607 0.48 -0.8 661,888 - MIT1002_00607 0.48 +1.3 661,992 + MIT1002_00607 0.56 -1.0 661,994 + MIT1002_00607 0.56 -1.0 662,023 + MIT1002_00607 0.58 -1.1 662,081 - MIT1002_00607 0.63 -2.4 662,095 - MIT1002_00607 0.64 +0.4 662,105 + MIT1002_00607 0.65 +0.7 662,141 + MIT1002_00607 0.68 +0.5 662,141 + MIT1002_00607 0.68 -0.5 662,149 - MIT1002_00607 0.68 -1.7 662,189 + MIT1002_00607 0.71 +2.2 662,194 + MIT1002_00607 0.72 +0.2 662,209 - MIT1002_00607 0.73 -0.2 662,236 + MIT1002_00607 0.75 +0.3 662,244 - MIT1002_00607 0.76 +1.9 662,244 - MIT1002_00607 0.76 -0.3 662,250 - MIT1002_00607 0.76 -0.7 662,264 + MIT1002_00607 0.77 +0.5 662,269 + MIT1002_00607 0.78 +0.9 662,269 + MIT1002_00607 0.78 +1.4 662,269 + MIT1002_00607 0.78 -1.5 662,269 + MIT1002_00607 0.78 +1.0 662,269 + MIT1002_00607 0.78 +2.5 662,269 + MIT1002_00607 0.78 -2.7 662,269 + MIT1002_00607 0.78 -1.9 662,269 + MIT1002_00607 0.78 -2.1 662,274 + MIT1002_00607 0.78 -0.2 662,276 + MIT1002_00607 0.78 -2.0 662,277 - MIT1002_00607 0.78 +0.1 662,277 - MIT1002_00607 0.78 +1.2 662,277 - MIT1002_00607 0.78 -1.9 662,277 - MIT1002_00607 0.78 +0.7 662,277 - MIT1002_00607 0.78 +0.4 662,277 - MIT1002_00607 0.78 -1.5 662,277 - MIT1002_00607 0.78 -2.8 662,277 - MIT1002_00607 0.78 -0.5 662,277 - MIT1002_00607 0.78 -1.4 662,277 - MIT1002_00607 0.78 -1.6 662,277 - MIT1002_00607 0.78 +0.5 662,282 - MIT1002_00607 0.79 +1.5 662,282 - MIT1002_00607 0.79 -0.9 662,284 - MIT1002_00607 0.79 +0.2 662,287 - MIT1002_00607 0.79 +0.2 662,330 - MIT1002_00607 0.82 +0.3 662,332 + MIT1002_00607 0.82 -0.7 662,340 + MIT1002_00607 0.83 -0.5 662,348 - MIT1002_00607 0.84 +0.2 662,359 - MIT1002_00607 0.85 -1.6 662,417 + MIT1002_00607 0.89 -0.1 662,436 + -1.1 662,436 + +0.6 662,436 - +0.2 662,496 - +1.3 662,628 + -0.7 662,636 - -0.1 662,677 + +0.2 662,685 - MIT1002_00608 0.10 +1.2 662,737 + MIT1002_00608 0.15 -1.0 662,737 + MIT1002_00608 0.15 +0.4 662,737 + MIT1002_00608 0.15 -1.1 662,737 + MIT1002_00608 0.15 -0.4 662,745 - MIT1002_00608 0.16 -1.7 662,747 + MIT1002_00608 0.16 +0.4 662,796 - MIT1002_00608 0.21 +2.7 662,799 + MIT1002_00608 0.22 +0.3 662,807 + MIT1002_00608 0.22 +0.9 662,807 - MIT1002_00608 0.22 +0.3 662,854 + MIT1002_00608 0.27 -0.9 662,890 - MIT1002_00608 0.31 +0.3 662,980 - MIT1002_00608 0.40 +0.3 663,042 + MIT1002_00608 0.46 +0.9 663,252 + MIT1002_00608 0.67 +0.5 663,273 + MIT1002_00608 0.69 +0.1 663,355 - MIT1002_00608 0.77 -0.1 663,430 + MIT1002_00608 0.85 +0.7 663,438 - MIT1002_00608 0.86 -0.8 663,531 + +0.5 663,536 - +0.5
Or see this region's nucleotide sequence