Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00580

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00579 and MIT1002_00580 are separated by 769 nucleotidesMIT1002_00580 and MIT1002_00581 are separated by 15 nucleotidesMIT1002_00581 and MIT1002_00582 are separated by 260 nucleotides MIT1002_00579: MIT1002_00579 - Octaprenyl-diphosphate synthase, at 625,950 to 626,930 _00579 MIT1002_00580: MIT1002_00580 - 50S ribosomal protein L21, at 627,700 to 628,011 _00580 MIT1002_00581: MIT1002_00581 - 50S ribosomal protein L27, at 628,027 to 628,284 _00581 MIT1002_00582: MIT1002_00582 - GTP-binding protein obg, at 628,545 to 629,705 _00582 Position (kb) 627 628 629Strain fitness (log2 ratio) -2 -1 0 1 2at 626.989 kb on + strandat 626.997 kb on - strandat 626.997 kb on - strandat 626.997 kb on - strandat 627.002 kb on - strandat 627.093 kb on - strandat 627.095 kb on - strandat 627.095 kb on - strandat 627.108 kb on - strandat 627.117 kb on + strandat 627.246 kb on - strandat 628.414 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6
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626,989 + -0.1
626,997 - +0.8
626,997 - -0.7
626,997 - +0.6
627,002 - +1.3
627,093 - -0.3
627,095 - -2.1
627,095 - -0.5
627,108 - -1.5
627,117 + +2.1
627,246 - -0.5
628,414 + +1.2

Or see this region's nucleotide sequence