Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00524 and MIT1002_00525 are separated by 186 nucleotides MIT1002_00525 and MIT1002_00526 are separated by 194 nucleotides MIT1002_00526 and MIT1002_00527 are separated by 200 nucleotides
MIT1002_00524: MIT1002_00524 - hypothetical protein, at 570,111 to 570,656
_00524
MIT1002_00525: MIT1002_00525 - DNA protection during starvation protein 2, at 570,843 to 571,316
_00525
MIT1002_00526: MIT1002_00526 - Soluble aldose sugar dehydrogenase YliI precursor, at 571,511 to 572,692
_00526
MIT1002_00527: MIT1002_00527 - Prolyl tripeptidyl peptidase precursor, at 572,893 to 575,001
_00527
Position (kb) 571
572
573 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 570.536 kb on - strand, within MIT1002_00524 at 570.549 kb on - strand, within MIT1002_00524 at 570.564 kb on + strand, within MIT1002_00524 at 570.589 kb on + strand, within MIT1002_00524 at 570.604 kb on - strand at 570.719 kb on + strand at 570.826 kb on + strand at 570.828 kb on + strand at 570.834 kb on + strand at 570.842 kb on - strand at 571.007 kb on + strand, within MIT1002_00525 at 571.007 kb on + strand, within MIT1002_00525 at 571.007 kb on + strand, within MIT1002_00525 at 571.007 kb on + strand, within MIT1002_00525 at 571.012 kb on + strand, within MIT1002_00525 at 571.012 kb on + strand, within MIT1002_00525 at 571.015 kb on - strand, within MIT1002_00525 at 571.015 kb on - strand, within MIT1002_00525 at 571.015 kb on - strand, within MIT1002_00525 at 571.074 kb on + strand, within MIT1002_00525 at 571.084 kb on + strand, within MIT1002_00525 at 571.092 kb on - strand, within MIT1002_00525 at 571.092 kb on - strand, within MIT1002_00525 at 571.121 kb on + strand, within MIT1002_00525 at 571.130 kb on - strand, within MIT1002_00525 at 571.205 kb on + strand, within MIT1002_00525 at 571.213 kb on - strand, within MIT1002_00525 at 571.215 kb on + strand, within MIT1002_00525 at 571.235 kb on + strand, within MIT1002_00525 at 571.241 kb on - strand, within MIT1002_00525 at 571.305 kb on - strand at 571.308 kb on - strand at 571.371 kb on + strand at 571.379 kb on - strand at 571.379 kb on - strand at 571.405 kb on + strand at 571.405 kb on + strand at 571.405 kb on + strand at 571.405 kb on + strand at 571.405 kb on + strand at 571.405 kb on + strand at 571.413 kb on - strand at 571.413 kb on - strand at 571.413 kb on - strand at 571.413 kb on - strand at 571.413 kb on - strand at 571.413 kb on - strand at 571.418 kb on - strand at 571.432 kb on + strand at 571.467 kb on - strand at 571.548 kb on - strand at 571.755 kb on + strand, within MIT1002_00526 at 571.758 kb on + strand, within MIT1002_00526 at 571.786 kb on - strand, within MIT1002_00526 at 571.801 kb on + strand, within MIT1002_00526 at 571.804 kb on - strand, within MIT1002_00526 at 571.804 kb on - strand, within MIT1002_00526 at 571.841 kb on + strand, within MIT1002_00526 at 571.846 kb on - strand, within MIT1002_00526 at 571.894 kb on - strand, within MIT1002_00526 at 571.952 kb on - strand, within MIT1002_00526 at 571.954 kb on + strand, within MIT1002_00526 at 571.954 kb on + strand, within MIT1002_00526 at 571.954 kb on + strand, within MIT1002_00526 at 571.954 kb on + strand, within MIT1002_00526 at 571.954 kb on + strand, within MIT1002_00526 at 571.962 kb on - strand, within MIT1002_00526 at 572.069 kb on + strand, within MIT1002_00526 at 572.079 kb on - strand, within MIT1002_00526 at 572.111 kb on + strand, within MIT1002_00526 at 572.169 kb on - strand, within MIT1002_00526 at 572.171 kb on + strand, within MIT1002_00526 at 572.171 kb on + strand, within MIT1002_00526 at 572.179 kb on - strand, within MIT1002_00526 at 572.194 kb on + strand, within MIT1002_00526 at 572.234 kb on + strand, within MIT1002_00526 at 572.242 kb on - strand, within MIT1002_00526 at 572.343 kb on + strand, within MIT1002_00526 at 572.346 kb on - strand, within MIT1002_00526 at 572.353 kb on + strand, within MIT1002_00526 at 572.361 kb on + strand, within MIT1002_00526 at 572.371 kb on - strand, within MIT1002_00526 at 572.457 kb on + strand, within MIT1002_00526 at 572.457 kb on + strand, within MIT1002_00526 at 572.465 kb on - strand, within MIT1002_00526 at 572.499 kb on + strand, within MIT1002_00526 at 572.504 kb on + strand, within MIT1002_00526 at 572.504 kb on + strand, within MIT1002_00526 at 572.573 kb on - strand, within MIT1002_00526 at 572.575 kb on + strand at 572.583 kb on - strand at 572.652 kb on + strand at 572.652 kb on + strand at 572.660 kb on - strand at 572.680 kb on - strand at 572.697 kb on + strand at 572.720 kb on - strand at 572.802 kb on - strand at 572.884 kb on + strand at 572.940 kb on - strand at 573.044 kb on + strand at 573.052 kb on - strand at 573.097 kb on + strand at 573.099 kb on + strand at 573.111 kb on + strand, within MIT1002_00527 at 573.133 kb on + strand, within MIT1002_00527 at 573.133 kb on + strand, within MIT1002_00527 at 573.133 kb on + strand, within MIT1002_00527 at 573.140 kb on + strand, within MIT1002_00527 at 573.141 kb on - strand, within MIT1002_00527 at 573.141 kb on - strand, within MIT1002_00527 at 573.173 kb on - strand, within MIT1002_00527 at 573.267 kb on - strand, within MIT1002_00527 at 573.267 kb on - strand, within MIT1002_00527 at 573.306 kb on + strand, within MIT1002_00527 at 573.312 kb on + strand, within MIT1002_00527 at 573.312 kb on + strand, within MIT1002_00527 at 573.312 kb on + strand, within MIT1002_00527 at 573.362 kb on - strand, within MIT1002_00527 at 573.411 kb on - strand, within MIT1002_00527 at 573.471 kb on + strand, within MIT1002_00527 at 573.476 kb on + strand, within MIT1002_00527 at 573.484 kb on - strand, within MIT1002_00527 at 573.492 kb on + strand, within MIT1002_00527 at 573.502 kb on - strand, within MIT1002_00527 at 573.542 kb on - strand, within MIT1002_00527 at 573.609 kb on - strand, within MIT1002_00527 at 573.618 kb on + strand, within MIT1002_00527 at 573.621 kb on - strand, within MIT1002_00527 at 573.653 kb on - strand, within MIT1002_00527
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6 remove 570,536 - MIT1002_00524 0.78 -0.7 570,549 - MIT1002_00524 0.80 -0.3 570,564 + MIT1002_00524 0.83 -1.6 570,589 + MIT1002_00524 0.88 +2.1 570,604 - -2.0 570,719 + -0.8 570,826 + -1.1 570,828 + -0.6 570,834 + -1.7 570,842 - +0.1 571,007 + MIT1002_00525 0.35 -1.9 571,007 + MIT1002_00525 0.35 +1.5 571,007 + MIT1002_00525 0.35 -0.1 571,007 + MIT1002_00525 0.35 +0.5 571,012 + MIT1002_00525 0.36 +0.5 571,012 + MIT1002_00525 0.36 +1.0 571,015 - MIT1002_00525 0.36 +0.4 571,015 - MIT1002_00525 0.36 -0.1 571,015 - MIT1002_00525 0.36 -1.6 571,074 + MIT1002_00525 0.49 -0.1 571,084 + MIT1002_00525 0.51 -0.5 571,092 - MIT1002_00525 0.53 -0.6 571,092 - MIT1002_00525 0.53 +0.1 571,121 + MIT1002_00525 0.59 +0.4 571,130 - MIT1002_00525 0.61 -0.6 571,205 + MIT1002_00525 0.76 +0.4 571,213 - MIT1002_00525 0.78 +0.0 571,215 + MIT1002_00525 0.78 +0.7 571,235 + MIT1002_00525 0.83 -0.6 571,241 - MIT1002_00525 0.84 -0.2 571,305 - +2.0 571,308 - -0.7 571,371 + -0.9 571,379 - +0.3 571,379 - +0.6 571,405 + +0.2 571,405 + +0.2 571,405 + +1.3 571,405 + -0.5 571,405 + +0.5 571,405 + +1.1 571,413 - +0.1 571,413 - -0.0 571,413 - -0.3 571,413 - +0.7 571,413 - -1.2 571,413 - +0.3 571,418 - -0.7 571,432 + -0.1 571,467 - +0.2 571,548 - +0.1 571,755 + MIT1002_00526 0.21 -0.0 571,758 + MIT1002_00526 0.21 -0.6 571,786 - MIT1002_00526 0.23 -1.3 571,801 + MIT1002_00526 0.25 -1.2 571,804 - MIT1002_00526 0.25 -1.5 571,804 - MIT1002_00526 0.25 +0.9 571,841 + MIT1002_00526 0.28 +0.2 571,846 - MIT1002_00526 0.28 -1.3 571,894 - MIT1002_00526 0.32 -1.8 571,952 - MIT1002_00526 0.37 -1.2 571,954 + MIT1002_00526 0.37 +0.6 571,954 + MIT1002_00526 0.37 -1.2 571,954 + MIT1002_00526 0.37 +1.7 571,954 + MIT1002_00526 0.37 +0.6 571,954 + MIT1002_00526 0.37 -0.0 571,962 - MIT1002_00526 0.38 +0.4 572,069 + MIT1002_00526 0.47 +1.1 572,079 - MIT1002_00526 0.48 -0.2 572,111 + MIT1002_00526 0.51 -0.3 572,169 - MIT1002_00526 0.56 +1.2 572,171 + MIT1002_00526 0.56 -0.2 572,171 + MIT1002_00526 0.56 -0.1 572,179 - MIT1002_00526 0.57 -0.5 572,194 + MIT1002_00526 0.58 -1.7 572,234 + MIT1002_00526 0.61 -0.5 572,242 - MIT1002_00526 0.62 +1.4 572,343 + MIT1002_00526 0.70 -1.1 572,346 - MIT1002_00526 0.71 -0.8 572,353 + MIT1002_00526 0.71 -0.8 572,361 + MIT1002_00526 0.72 -1.1 572,371 - MIT1002_00526 0.73 -1.5 572,457 + MIT1002_00526 0.80 +0.8 572,457 + MIT1002_00526 0.80 -2.1 572,465 - MIT1002_00526 0.81 +2.8 572,499 + MIT1002_00526 0.84 +0.1 572,504 + MIT1002_00526 0.84 +0.3 572,504 + MIT1002_00526 0.84 -1.1 572,573 - MIT1002_00526 0.90 -0.7 572,575 + +2.4 572,583 - +0.9 572,652 + -0.2 572,652 + +1.8 572,660 - +0.4 572,680 - -0.0 572,697 + +0.6 572,720 - +0.7 572,802 - -1.3 572,884 + -0.7 572,940 - +0.6 573,044 + +0.5 573,052 - -0.7 573,097 + +0.2 573,099 + +0.0 573,111 + MIT1002_00527 0.10 -0.3 573,133 + MIT1002_00527 0.11 -1.5 573,133 + MIT1002_00527 0.11 +1.5 573,133 + MIT1002_00527 0.11 -0.1 573,140 + MIT1002_00527 0.12 -2.5 573,141 - MIT1002_00527 0.12 -0.1 573,141 - MIT1002_00527 0.12 -1.8 573,173 - MIT1002_00527 0.13 +0.1 573,267 - MIT1002_00527 0.18 +0.8 573,267 - MIT1002_00527 0.18 -0.2 573,306 + MIT1002_00527 0.20 -0.1 573,312 + MIT1002_00527 0.20 +2.0 573,312 + MIT1002_00527 0.20 -2.1 573,312 + MIT1002_00527 0.20 -1.3 573,362 - MIT1002_00527 0.22 +1.3 573,411 - MIT1002_00527 0.25 -0.5 573,471 + MIT1002_00527 0.27 -0.2 573,476 + MIT1002_00527 0.28 +0.6 573,484 - MIT1002_00527 0.28 +1.0 573,492 + MIT1002_00527 0.28 -2.1 573,502 - MIT1002_00527 0.29 -0.1 573,542 - MIT1002_00527 0.31 +2.3 573,609 - MIT1002_00527 0.34 -0.7 573,618 + MIT1002_00527 0.34 +1.3 573,621 - MIT1002_00527 0.35 -0.5 573,653 - MIT1002_00527 0.36 +1.5
Or see this region's nucleotide sequence