Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00438

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00437 and MIT1002_00438 are separated by 462 nucleotidesMIT1002_00438 and MIT1002_00439 are separated by 297 nucleotidesMIT1002_00439 and MIT1002_00440 are separated by 100 nucleotides MIT1002_00437: MIT1002_00437 - Succinylornithine transaminase/acetylornithine aminotransferase, at 478,275 to 479,483 _00437 MIT1002_00438: MIT1002_00438 - HDOD domain protein, at 479,946 to 481,112 _00438 MIT1002_00439: MIT1002_00439 - Para-aminobenzoate synthase glutamine amidotransferase component II, at 481,410 to 481,994 _00439 MIT1002_00440: MIT1002_00440 - Tryptophan--tRNA ligase, at 482,095 to 483,102 _00440 Position (kb) 479 480 481 482Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 478.991 kb on + strand, within MIT1002_00437at 478.999 kb on - strand, within MIT1002_00437at 478.999 kb on - strand, within MIT1002_00437at 479.029 kb on - strand, within MIT1002_00437at 479.156 kb on - strand, within MIT1002_00437at 479.342 kb on + strand, within MIT1002_00437at 479.350 kb on - strand, within MIT1002_00437at 479.374 kb on + strandat 479.393 kb on + strandat 479.409 kb on - strandat 479.484 kb on - strandat 479.497 kb on + strandat 479.500 kb on - strandat 479.555 kb on + strandat 479.768 kb on - strandat 479.797 kb on - strandat 479.860 kb on + strandat 480.022 kb on + strandat 480.027 kb on + strandat 480.030 kb on - strandat 480.030 kb on - strandat 480.030 kb on - strandat 480.030 kb on - strandat 480.078 kb on - strand, within MIT1002_00438at 480.124 kb on + strand, within MIT1002_00438at 480.136 kb on + strand, within MIT1002_00438at 480.136 kb on + strand, within MIT1002_00438at 480.136 kb on + strand, within MIT1002_00438at 480.136 kb on + strand, within MIT1002_00438at 480.136 kb on + strand, within MIT1002_00438at 480.136 kb on + strand, within MIT1002_00438at 480.136 kb on + strand, within MIT1002_00438at 480.136 kb on + strand, within MIT1002_00438at 480.136 kb on + strand, within MIT1002_00438at 480.136 kb on + strand, within MIT1002_00438at 480.136 kb on + strand, within MIT1002_00438at 480.144 kb on - strand, within MIT1002_00438at 480.144 kb on - strand, within MIT1002_00438at 480.144 kb on - strand, within MIT1002_00438at 480.144 kb on - strand, within MIT1002_00438at 480.221 kb on - strand, within MIT1002_00438at 480.231 kb on + strand, within MIT1002_00438at 480.286 kb on + strand, within MIT1002_00438at 480.424 kb on + strand, within MIT1002_00438at 480.432 kb on - strand, within MIT1002_00438at 480.432 kb on - strand, within MIT1002_00438at 480.432 kb on - strand, within MIT1002_00438at 480.479 kb on + strand, within MIT1002_00438at 480.490 kb on + strand, within MIT1002_00438at 480.572 kb on + strand, within MIT1002_00438at 480.580 kb on - strand, within MIT1002_00438at 480.580 kb on - strand, within MIT1002_00438at 480.580 kb on - strand, within MIT1002_00438at 480.606 kb on + strand, within MIT1002_00438at 480.606 kb on + strand, within MIT1002_00438at 480.614 kb on - strand, within MIT1002_00438at 480.614 kb on - strand, within MIT1002_00438at 480.637 kb on - strand, within MIT1002_00438at 480.644 kb on + strand, within MIT1002_00438at 480.676 kb on + strand, within MIT1002_00438at 480.684 kb on - strand, within MIT1002_00438at 480.686 kb on - strand, within MIT1002_00438at 480.703 kb on - strand, within MIT1002_00438at 480.715 kb on - strand, within MIT1002_00438at 480.801 kb on + strand, within MIT1002_00438at 480.809 kb on - strand, within MIT1002_00438at 480.829 kb on + strand, within MIT1002_00438at 480.829 kb on + strand, within MIT1002_00438at 480.837 kb on - strand, within MIT1002_00438at 480.845 kb on - strand, within MIT1002_00438at 480.883 kb on - strand, within MIT1002_00438at 480.883 kb on - strand, within MIT1002_00438at 480.897 kb on + strand, within MIT1002_00438at 480.959 kb on + strand, within MIT1002_00438at 480.967 kb on - strand, within MIT1002_00438at 481.233 kb on + strandat 481.305 kb on - strandat 481.385 kb on - strandat 481.417 kb on + strandat 481.477 kb on + strand, within MIT1002_00439at 481.477 kb on + strand, within MIT1002_00439at 481.482 kb on + strand, within MIT1002_00439at 481.482 kb on + strand, within MIT1002_00439at 481.485 kb on - strand, within MIT1002_00439at 481.485 kb on - strand, within MIT1002_00439at 481.490 kb on - strand, within MIT1002_00439at 481.490 kb on - strand, within MIT1002_00439at 481.491 kb on + strand, within MIT1002_00439at 481.562 kb on + strand, within MIT1002_00439at 481.562 kb on + strand, within MIT1002_00439at 481.570 kb on - strand, within MIT1002_00439at 481.645 kb on + strand, within MIT1002_00439at 481.655 kb on + strand, within MIT1002_00439at 481.660 kb on + strand, within MIT1002_00439at 481.694 kb on + strand, within MIT1002_00439at 481.703 kb on + strand, within MIT1002_00439at 481.703 kb on + strand, within MIT1002_00439at 481.703 kb on - strand, within MIT1002_00439at 481.703 kb on - strand, within MIT1002_00439at 481.711 kb on - strand, within MIT1002_00439at 481.739 kb on - strand, within MIT1002_00439at 481.817 kb on - strand, within MIT1002_00439at 481.823 kb on + strand, within MIT1002_00439at 481.846 kb on + strand, within MIT1002_00439at 481.885 kb on + strand, within MIT1002_00439at 481.910 kb on - strand, within MIT1002_00439at 481.913 kb on + strand, within MIT1002_00439at 481.921 kb on - strand, within MIT1002_00439at 481.924 kb on + strand, within MIT1002_00439at 481.924 kb on + strand, within MIT1002_00439at 481.932 kb on - strand, within MIT1002_00439at 481.934 kb on + strand, within MIT1002_00439at 481.952 kb on + strandat 481.960 kb on - strandat 481.986 kb on + strandat 481.991 kb on + strandat 481.991 kb on + strandat 481.999 kb on + strandat 482.053 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6
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478,991 + MIT1002_00437 0.59 -2.7
478,999 - MIT1002_00437 0.60 -1.3
478,999 - MIT1002_00437 0.60 -3.5
479,029 - MIT1002_00437 0.62 -1.9
479,156 - MIT1002_00437 0.73 -1.6
479,342 + MIT1002_00437 0.88 -2.4
479,350 - MIT1002_00437 0.89 +0.1
479,374 + -3.0
479,393 + -1.6
479,409 - -0.3
479,484 - -1.5
479,497 + -2.7
479,500 - -2.4
479,555 + -1.1
479,768 - +0.4
479,797 - -0.6
479,860 + -1.6
480,022 + -0.1
480,027 + -0.1
480,030 - +0.4
480,030 - +1.3
480,030 - -1.7
480,030 - -2.2
480,078 - MIT1002_00438 0.11 +0.0
480,124 + MIT1002_00438 0.15 +0.4
480,136 + MIT1002_00438 0.16 +1.3
480,136 + MIT1002_00438 0.16 +0.5
480,136 + MIT1002_00438 0.16 +0.4
480,136 + MIT1002_00438 0.16 +1.2
480,136 + MIT1002_00438 0.16 -1.0
480,136 + MIT1002_00438 0.16 +0.5
480,136 + MIT1002_00438 0.16 +2.0
480,136 + MIT1002_00438 0.16 -2.0
480,136 + MIT1002_00438 0.16 +1.0
480,136 + MIT1002_00438 0.16 -1.2
480,136 + MIT1002_00438 0.16 -1.8
480,144 - MIT1002_00438 0.17 +3.2
480,144 - MIT1002_00438 0.17 +0.5
480,144 - MIT1002_00438 0.17 -0.8
480,144 - MIT1002_00438 0.17 +1.1
480,221 - MIT1002_00438 0.24 -0.7
480,231 + MIT1002_00438 0.24 -0.1
480,286 + MIT1002_00438 0.29 -0.8
480,424 + MIT1002_00438 0.41 -0.7
480,432 - MIT1002_00438 0.42 +0.3
480,432 - MIT1002_00438 0.42 -0.3
480,432 - MIT1002_00438 0.42 -0.1
480,479 + MIT1002_00438 0.46 +0.2
480,490 + MIT1002_00438 0.47 +1.3
480,572 + MIT1002_00438 0.54 +1.1
480,580 - MIT1002_00438 0.54 -1.3
480,580 - MIT1002_00438 0.54 +0.1
480,580 - MIT1002_00438 0.54 -0.7
480,606 + MIT1002_00438 0.57 +0.3
480,606 + MIT1002_00438 0.57 -2.2
480,614 - MIT1002_00438 0.57 +0.7
480,614 - MIT1002_00438 0.57 +0.7
480,637 - MIT1002_00438 0.59 -0.3
480,644 + MIT1002_00438 0.60 +0.7
480,676 + MIT1002_00438 0.63 -1.7
480,684 - MIT1002_00438 0.63 -0.5
480,686 - MIT1002_00438 0.63 -0.3
480,703 - MIT1002_00438 0.65 -0.7
480,715 - MIT1002_00438 0.66 +1.3
480,801 + MIT1002_00438 0.73 -0.5
480,809 - MIT1002_00438 0.74 +2.4
480,829 + MIT1002_00438 0.76 +1.0
480,829 + MIT1002_00438 0.76 -0.1
480,837 - MIT1002_00438 0.76 -1.6
480,845 - MIT1002_00438 0.77 -0.5
480,883 - MIT1002_00438 0.80 +0.4
480,883 - MIT1002_00438 0.80 -2.3
480,897 + MIT1002_00438 0.81 +0.5
480,959 + MIT1002_00438 0.87 -0.8
480,967 - MIT1002_00438 0.87 -0.3
481,233 + -1.3
481,305 - +0.5
481,385 - -0.2
481,417 + +0.5
481,477 + MIT1002_00439 0.11 -3.3
481,477 + MIT1002_00439 0.11 -3.6
481,482 + MIT1002_00439 0.12 -0.1
481,482 + MIT1002_00439 0.12 -4.8
481,485 - MIT1002_00439 0.13 -5.8
481,485 - MIT1002_00439 0.13 -4.4
481,490 - MIT1002_00439 0.14 +0.4
481,490 - MIT1002_00439 0.14 -3.4
481,491 + MIT1002_00439 0.14 -1.4
481,562 + MIT1002_00439 0.26 -2.8
481,562 + MIT1002_00439 0.26 -3.9
481,570 - MIT1002_00439 0.27 -1.1
481,645 + MIT1002_00439 0.40 -1.5
481,655 + MIT1002_00439 0.42 -2.5
481,660 + MIT1002_00439 0.43 -3.8
481,694 + MIT1002_00439 0.49 -1.6
481,703 + MIT1002_00439 0.50 -3.0
481,703 + MIT1002_00439 0.50 -3.8
481,703 - MIT1002_00439 0.50 -1.0
481,703 - MIT1002_00439 0.50 -2.0
481,711 - MIT1002_00439 0.51 -1.5
481,739 - MIT1002_00439 0.56 -3.1
481,817 - MIT1002_00439 0.70 -4.1
481,823 + MIT1002_00439 0.71 -0.7
481,846 + MIT1002_00439 0.75 -4.7
481,885 + MIT1002_00439 0.81 -2.5
481,910 - MIT1002_00439 0.85 -1.7
481,913 + MIT1002_00439 0.86 -1.6
481,921 - MIT1002_00439 0.87 -3.9
481,924 + MIT1002_00439 0.88 -2.7
481,924 + MIT1002_00439 0.88 -2.3
481,932 - MIT1002_00439 0.89 -2.0
481,934 + MIT1002_00439 0.90 -3.7
481,952 + -4.9
481,960 - -3.6
481,986 + -3.1
481,991 + -3.8
481,991 + -2.7
481,999 + -4.9
482,053 - +0.3

Or see this region's nucleotide sequence