Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00436

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00435 and MIT1002_00436 are separated by 13 nucleotidesMIT1002_00436 and MIT1002_00437 are separated by 20 nucleotides MIT1002_00435: MIT1002_00435 - N-succinylglutamate 5-semialdehyde dehydrogenase, at 475,734 to 477,203 _00435 MIT1002_00436: MIT1002_00436 - Arginine N-succinyltransferase subunit beta, at 477,217 to 478,254 _00436 MIT1002_00437: MIT1002_00437 - Succinylornithine transaminase/acetylornithine aminotransferase, at 478,275 to 479,483 _00437 Position (kb) 477 478 479Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 476.267 kb on + strand, within MIT1002_00435at 476.320 kb on + strand, within MIT1002_00435at 476.323 kb on - strand, within MIT1002_00435at 476.325 kb on + strand, within MIT1002_00435at 476.328 kb on - strand, within MIT1002_00435at 476.328 kb on - strand, within MIT1002_00435at 476.354 kb on - strand, within MIT1002_00435at 476.354 kb on - strand, within MIT1002_00435at 476.360 kb on + strand, within MIT1002_00435at 476.370 kb on - strand, within MIT1002_00435at 476.375 kb on + strand, within MIT1002_00435at 476.375 kb on + strand, within MIT1002_00435at 476.433 kb on - strand, within MIT1002_00435at 476.497 kb on + strand, within MIT1002_00435at 476.505 kb on - strand, within MIT1002_00435at 476.505 kb on - strand, within MIT1002_00435at 476.505 kb on - strand, within MIT1002_00435at 476.582 kb on - strand, within MIT1002_00435at 476.583 kb on - strand, within MIT1002_00435at 476.611 kb on + strand, within MIT1002_00435at 476.614 kb on - strand, within MIT1002_00435at 476.614 kb on - strand, within MIT1002_00435at 476.619 kb on - strand, within MIT1002_00435at 476.621 kb on - strand, within MIT1002_00435at 476.621 kb on - strand, within MIT1002_00435at 476.641 kb on - strand, within MIT1002_00435at 476.644 kb on + strand, within MIT1002_00435at 476.816 kb on - strand, within MIT1002_00435at 477.000 kb on - strand, within MIT1002_00435at 477.150 kb on + strandat 477.158 kb on - strandat 477.158 kb on - strandat 477.158 kb on - strandat 477.158 kb on - strandat 477.178 kb on - strandat 477.224 kb on - strandat 477.388 kb on + strand, within MIT1002_00436at 477.436 kb on + strand, within MIT1002_00436at 477.444 kb on - strand, within MIT1002_00436at 477.444 kb on - strand, within MIT1002_00436at 477.444 kb on - strand, within MIT1002_00436at 477.446 kb on + strand, within MIT1002_00436at 477.989 kb on - strand, within MIT1002_00436at 478.136 kb on + strand, within MIT1002_00436at 478.324 kb on - strandat 478.343 kb on - strandat 478.409 kb on + strand, within MIT1002_00437at 478.433 kb on - strand, within MIT1002_00437at 478.443 kb on + strand, within MIT1002_00437at 478.470 kb on + strand, within MIT1002_00437at 478.478 kb on - strand, within MIT1002_00437at 478.478 kb on - strand, within MIT1002_00437at 478.490 kb on - strand, within MIT1002_00437at 478.528 kb on + strand, within MIT1002_00437at 478.570 kb on + strand, within MIT1002_00437at 478.570 kb on + strand, within MIT1002_00437at 478.578 kb on - strand, within MIT1002_00437at 478.578 kb on - strand, within MIT1002_00437at 478.626 kb on + strand, within MIT1002_00437at 478.634 kb on - strand, within MIT1002_00437at 478.642 kb on - strand, within MIT1002_00437at 478.656 kb on - strand, within MIT1002_00437at 478.666 kb on + strand, within MIT1002_00437at 478.666 kb on + strand, within MIT1002_00437at 478.666 kb on + strand, within MIT1002_00437at 478.666 kb on + strand, within MIT1002_00437at 478.666 kb on + strand, within MIT1002_00437at 478.666 kb on + strand, within MIT1002_00437at 478.666 kb on + strand, within MIT1002_00437at 478.666 kb on + strand, within MIT1002_00437at 478.666 kb on + strand, within MIT1002_00437at 478.674 kb on - strand, within MIT1002_00437at 478.674 kb on - strand, within MIT1002_00437at 478.674 kb on - strand, within MIT1002_00437at 478.684 kb on - strand, within MIT1002_00437at 478.780 kb on + strand, within MIT1002_00437at 478.788 kb on - strand, within MIT1002_00437at 478.790 kb on + strand, within MIT1002_00437at 478.878 kb on + strand, within MIT1002_00437at 478.991 kb on + strand, within MIT1002_00437at 478.999 kb on - strand, within MIT1002_00437at 478.999 kb on - strand, within MIT1002_00437at 479.029 kb on - strand, within MIT1002_00437at 479.156 kb on - strand, within MIT1002_00437

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6
remove
476,267 + MIT1002_00435 0.36 -0.4
476,320 + MIT1002_00435 0.40 -1.4
476,323 - MIT1002_00435 0.40 -0.1
476,325 + MIT1002_00435 0.40 -0.6
476,328 - MIT1002_00435 0.40 +0.4
476,328 - MIT1002_00435 0.40 -0.4
476,354 - MIT1002_00435 0.42 -0.2
476,354 - MIT1002_00435 0.42 +1.4
476,360 + MIT1002_00435 0.43 -1.8
476,370 - MIT1002_00435 0.43 -0.4
476,375 + MIT1002_00435 0.44 -3.1
476,375 + MIT1002_00435 0.44 -2.6
476,433 - MIT1002_00435 0.48 +1.4
476,497 + MIT1002_00435 0.52 -1.1
476,505 - MIT1002_00435 0.52 -2.0
476,505 - MIT1002_00435 0.52 -1.2
476,505 - MIT1002_00435 0.52 +0.2
476,582 - MIT1002_00435 0.58 -1.2
476,583 - MIT1002_00435 0.58 -0.6
476,611 + MIT1002_00435 0.60 -2.3
476,614 - MIT1002_00435 0.60 -1.6
476,614 - MIT1002_00435 0.60 -0.9
476,619 - MIT1002_00435 0.60 -2.1
476,621 - MIT1002_00435 0.60 -1.1
476,621 - MIT1002_00435 0.60 -0.5
476,641 - MIT1002_00435 0.62 -2.2
476,644 + MIT1002_00435 0.62 -2.0
476,816 - MIT1002_00435 0.74 +1.3
477,000 - MIT1002_00435 0.86 -2.4
477,150 + -1.6
477,158 - -3.1
477,158 - -0.8
477,158 - +0.1
477,158 - -3.1
477,178 - -3.6
477,224 - +0.9
477,388 + MIT1002_00436 0.16 -3.2
477,436 + MIT1002_00436 0.21 -3.6
477,444 - MIT1002_00436 0.22 +0.7
477,444 - MIT1002_00436 0.22 -3.1
477,444 - MIT1002_00436 0.22 -0.3
477,446 + MIT1002_00436 0.22 -1.3
477,989 - MIT1002_00436 0.74 -2.8
478,136 + MIT1002_00436 0.89 -3.1
478,324 - -3.6
478,343 - -2.8
478,409 + MIT1002_00437 0.11 -1.2
478,433 - MIT1002_00437 0.13 -3.9
478,443 + MIT1002_00437 0.14 -1.5
478,470 + MIT1002_00437 0.16 -0.3
478,478 - MIT1002_00437 0.17 -3.2
478,478 - MIT1002_00437 0.17 -1.9
478,490 - MIT1002_00437 0.18 -2.6
478,528 + MIT1002_00437 0.21 +0.4
478,570 + MIT1002_00437 0.24 -1.7
478,570 + MIT1002_00437 0.24 -2.7
478,578 - MIT1002_00437 0.25 -4.0
478,578 - MIT1002_00437 0.25 -2.3
478,626 + MIT1002_00437 0.29 -2.5
478,634 - MIT1002_00437 0.30 -2.4
478,642 - MIT1002_00437 0.30 -1.5
478,656 - MIT1002_00437 0.32 -3.1
478,666 + MIT1002_00437 0.32 -3.0
478,666 + MIT1002_00437 0.32 -3.0
478,666 + MIT1002_00437 0.32 -1.5
478,666 + MIT1002_00437 0.32 -1.8
478,666 + MIT1002_00437 0.32 -1.7
478,666 + MIT1002_00437 0.32 -6.6
478,666 + MIT1002_00437 0.32 -4.8
478,666 + MIT1002_00437 0.32 -2.8
478,666 + MIT1002_00437 0.32 -1.5
478,674 - MIT1002_00437 0.33 -2.0
478,674 - MIT1002_00437 0.33 +0.4
478,674 - MIT1002_00437 0.33 -1.1
478,684 - MIT1002_00437 0.34 -4.5
478,780 + MIT1002_00437 0.42 +0.1
478,788 - MIT1002_00437 0.42 -0.3
478,790 + MIT1002_00437 0.43 -2.2
478,878 + MIT1002_00437 0.50 -4.6
478,991 + MIT1002_00437 0.59 -2.7
478,999 - MIT1002_00437 0.60 -1.3
478,999 - MIT1002_00437 0.60 -3.5
479,029 - MIT1002_00437 0.62 -1.9
479,156 - MIT1002_00437 0.73 -1.6

Or see this region's nucleotide sequence