Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00327 and MIT1002_00328 are separated by 118 nucleotides MIT1002_00328 and MIT1002_00329 are separated by 265 nucleotides MIT1002_00329 and MIT1002_00330 are separated by 75 nucleotides
MIT1002_00327: MIT1002_00327 - Methionyl-tRNA formyltransferase, at 353,895 to 354,731
_00327
MIT1002_00328: MIT1002_00328 - hypothetical protein, at 354,850 to 355,260
_00328
MIT1002_00329: MIT1002_00329 - Zn(II)-responsive regulator of zntA, at 355,526 to 355,960
_00329
MIT1002_00330: MIT1002_00330 - Copper-exporting P-type ATPase A, at 356,036 to 358,279
_00330
Position (kb) 354
355
356 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 353.875 kb on + strand at 353.880 kb on - strand at 353.883 kb on + strand at 354.066 kb on + strand, within MIT1002_00327 at 354.074 kb on - strand, within MIT1002_00327 at 354.081 kb on - strand, within MIT1002_00327 at 354.114 kb on - strand, within MIT1002_00327 at 354.114 kb on - strand, within MIT1002_00327 at 354.114 kb on - strand, within MIT1002_00327 at 354.185 kb on + strand, within MIT1002_00327 at 354.499 kb on + strand, within MIT1002_00327 at 354.510 kb on + strand, within MIT1002_00327 at 354.517 kb on + strand, within MIT1002_00327 at 354.517 kb on + strand, within MIT1002_00327 at 354.525 kb on - strand, within MIT1002_00327 at 354.527 kb on + strand, within MIT1002_00327 at 354.655 kb on - strand at 354.741 kb on + strand at 354.749 kb on + strand at 354.749 kb on + strand at 354.765 kb on - strand at 354.765 kb on - strand at 354.787 kb on - strand at 354.787 kb on - strand at 354.804 kb on - strand at 354.809 kb on - strand at 354.819 kb on + strand at 354.842 kb on + strand at 354.842 kb on + strand at 354.858 kb on - strand at 354.892 kb on + strand, within MIT1002_00328 at 354.971 kb on + strand, within MIT1002_00328 at 354.992 kb on + strand, within MIT1002_00328 at 354.992 kb on + strand, within MIT1002_00328 at 355.048 kb on + strand, within MIT1002_00328 at 355.048 kb on + strand, within MIT1002_00328 at 355.056 kb on - strand, within MIT1002_00328 at 355.056 kb on - strand, within MIT1002_00328 at 355.056 kb on - strand, within MIT1002_00328 at 355.063 kb on + strand, within MIT1002_00328 at 355.097 kb on - strand, within MIT1002_00328 at 355.099 kb on - strand, within MIT1002_00328 at 355.213 kb on + strand, within MIT1002_00328 at 355.213 kb on + strand, within MIT1002_00328 at 355.221 kb on - strand at 355.221 kb on - strand at 355.228 kb on + strand at 355.244 kb on - strand at 355.248 kb on + strand at 355.254 kb on + strand at 355.254 kb on + strand at 355.316 kb on + strand at 355.347 kb on + strand at 355.385 kb on + strand at 355.385 kb on + strand at 355.410 kb on + strand at 355.449 kb on + strand at 355.449 kb on - strand at 355.457 kb on - strand at 355.457 kb on - strand at 355.457 kb on - strand at 355.473 kb on + strand at 355.473 kb on + strand at 355.473 kb on + strand at 355.473 kb on + strand at 355.473 kb on + strand at 355.473 kb on + strand at 355.473 kb on + strand at 355.473 kb on + strand at 355.473 kb on + strand at 355.481 kb on - strand at 355.481 kb on - strand at 355.481 kb on - strand at 355.481 kb on - strand at 355.481 kb on - strand at 355.481 kb on - strand at 355.521 kb on - strand at 355.572 kb on - strand, within MIT1002_00329 at 355.597 kb on - strand, within MIT1002_00329 at 355.641 kb on - strand, within MIT1002_00329 at 355.677 kb on + strand, within MIT1002_00329 at 355.738 kb on + strand, within MIT1002_00329 at 355.877 kb on + strand, within MIT1002_00329 at 355.884 kb on + strand, within MIT1002_00329 at 355.892 kb on - strand, within MIT1002_00329 at 355.892 kb on - strand, within MIT1002_00329 at 355.922 kb on - strand at 356.040 kb on + strand at 356.040 kb on + strand at 356.046 kb on + strand at 356.048 kb on - strand at 356.054 kb on - strand at 356.104 kb on + strand at 356.155 kb on - strand at 356.166 kb on + strand at 356.174 kb on - strand at 356.211 kb on + strand at 356.211 kb on + strand at 356.228 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6 remove 353,875 + +1.9 353,880 - +1.1 353,883 + -0.7 354,066 + MIT1002_00327 0.20 -0.1 354,074 - MIT1002_00327 0.21 -0.6 354,081 - MIT1002_00327 0.22 -1.2 354,114 - MIT1002_00327 0.26 +0.2 354,114 - MIT1002_00327 0.26 +0.5 354,114 - MIT1002_00327 0.26 +0.9 354,185 + MIT1002_00327 0.35 +0.1 354,499 + MIT1002_00327 0.72 +2.3 354,510 + MIT1002_00327 0.73 -0.2 354,517 + MIT1002_00327 0.74 +1.7 354,517 + MIT1002_00327 0.74 +0.3 354,525 - MIT1002_00327 0.75 -0.1 354,527 + MIT1002_00327 0.76 -0.3 354,655 - +0.3 354,741 + -0.1 354,749 + +1.0 354,749 + +0.3 354,765 - +0.6 354,765 - -0.0 354,787 - +1.0 354,787 - -1.8 354,804 - -1.8 354,809 - -1.8 354,819 + +1.0 354,842 + +1.1 354,842 + +0.7 354,858 - -0.6 354,892 + MIT1002_00328 0.10 -0.6 354,971 + MIT1002_00328 0.29 +0.2 354,992 + MIT1002_00328 0.35 +0.9 354,992 + MIT1002_00328 0.35 -0.1 355,048 + MIT1002_00328 0.48 -3.6 355,048 + MIT1002_00328 0.48 -0.2 355,056 - MIT1002_00328 0.50 +0.9 355,056 - MIT1002_00328 0.50 +0.6 355,056 - MIT1002_00328 0.50 +1.1 355,063 + MIT1002_00328 0.52 +2.6 355,097 - MIT1002_00328 0.60 -1.3 355,099 - MIT1002_00328 0.61 -0.2 355,213 + MIT1002_00328 0.88 +1.9 355,213 + MIT1002_00328 0.88 +0.1 355,221 - +2.3 355,221 - -1.4 355,228 + -0.3 355,244 - +1.8 355,248 + -2.9 355,254 + +0.2 355,254 + -2.4 355,316 + -1.2 355,347 + +0.2 355,385 + +0.9 355,385 + +1.0 355,410 + +0.2 355,449 + -0.0 355,449 - -0.8 355,457 - -0.2 355,457 - -2.1 355,457 - +1.5 355,473 + -0.5 355,473 + -0.5 355,473 + +0.7 355,473 + +0.4 355,473 + -0.6 355,473 + +0.4 355,473 + -0.2 355,473 + +0.8 355,473 + +0.8 355,481 - +0.8 355,481 - +0.0 355,481 - -0.3 355,481 - +0.8 355,481 - -0.3 355,481 - +1.7 355,521 - -0.8 355,572 - MIT1002_00329 0.11 +1.0 355,597 - MIT1002_00329 0.16 -1.2 355,641 - MIT1002_00329 0.26 +1.1 355,677 + MIT1002_00329 0.35 -0.8 355,738 + MIT1002_00329 0.49 +0.6 355,877 + MIT1002_00329 0.81 -0.7 355,884 + MIT1002_00329 0.82 -2.1 355,892 - MIT1002_00329 0.84 +0.4 355,892 - MIT1002_00329 0.84 +0.8 355,922 - -1.6 356,040 + -0.5 356,040 + -0.2 356,046 + -1.7 356,048 - +0.3 356,054 - +0.1 356,104 + +0.5 356,155 - +0.7 356,166 + -0.3 356,174 - -1.3 356,211 + +0.4 356,211 + +0.1 356,228 + +1.2
Or see this region's nucleotide sequence