Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00212

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00211 and MIT1002_00212 are separated by 27 nucleotidesMIT1002_00212 and MIT1002_00213 are separated by 44 nucleotidesMIT1002_00213 and MIT1002_00214 are separated by 22 nucleotides MIT1002_00211: MIT1002_00211 - General secretion pathway protein F, at 234,625 to 235,860 _00211 MIT1002_00212: MIT1002_00212 - hypothetical protein, at 235,888 to 236,382 _00212 MIT1002_00213: MIT1002_00213 - Pilin, at 236,427 to 237,014 _00213 MIT1002_00214: MIT1002_00214 - Serogroup C1, at 237,037 to 237,549 _00214 Position (kb) 235 236 237Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 234.968 kb on + strand, within MIT1002_00211at 234.968 kb on + strand, within MIT1002_00211at 234.976 kb on - strand, within MIT1002_00211at 234.976 kb on - strand, within MIT1002_00211at 234.976 kb on - strand, within MIT1002_00211at 234.990 kb on + strand, within MIT1002_00211at 234.998 kb on - strand, within MIT1002_00211at 235.026 kb on - strand, within MIT1002_00211at 235.091 kb on + strand, within MIT1002_00211at 235.152 kb on - strand, within MIT1002_00211at 235.261 kb on + strand, within MIT1002_00211at 235.315 kb on - strand, within MIT1002_00211at 235.427 kb on + strand, within MIT1002_00211at 235.660 kb on + strand, within MIT1002_00211at 235.668 kb on - strand, within MIT1002_00211at 235.708 kb on - strand, within MIT1002_00211at 235.708 kb on - strand, within MIT1002_00211at 235.784 kb on + strandat 235.887 kb on - strandat 235.953 kb on - strand, within MIT1002_00212at 235.993 kb on + strand, within MIT1002_00212at 236.028 kb on + strand, within MIT1002_00212at 236.036 kb on - strand, within MIT1002_00212at 236.054 kb on + strand, within MIT1002_00212at 236.072 kb on - strand, within MIT1002_00212at 236.123 kb on + strand, within MIT1002_00212at 236.133 kb on + strand, within MIT1002_00212at 236.133 kb on + strand, within MIT1002_00212at 236.141 kb on - strand, within MIT1002_00212at 236.205 kb on - strand, within MIT1002_00212at 236.294 kb on + strand, within MIT1002_00212at 236.446 kb on + strandat 236.473 kb on - strandat 236.508 kb on + strand, within MIT1002_00213at 236.518 kb on + strand, within MIT1002_00213at 236.583 kb on + strand, within MIT1002_00213at 236.613 kb on + strand, within MIT1002_00213at 236.613 kb on + strand, within MIT1002_00213at 236.621 kb on - strand, within MIT1002_00213at 236.621 kb on - strand, within MIT1002_00213at 236.621 kb on - strand, within MIT1002_00213at 236.621 kb on - strand, within MIT1002_00213at 236.629 kb on - strand, within MIT1002_00213at 236.685 kb on + strand, within MIT1002_00213at 236.702 kb on + strand, within MIT1002_00213at 236.706 kb on - strand, within MIT1002_00213at 236.719 kb on + strand, within MIT1002_00213at 236.727 kb on - strand, within MIT1002_00213at 236.869 kb on - strand, within MIT1002_00213at 236.934 kb on - strand, within MIT1002_00213at 236.999 kb on + strandat 237.062 kb on + strandat 237.070 kb on - strandat 237.070 kb on - strandat 237.070 kb on - strandat 237.107 kb on - strand, within MIT1002_00214at 237.119 kb on + strand, within MIT1002_00214at 237.174 kb on - strand, within MIT1002_00214at 237.193 kb on - strand, within MIT1002_00214at 237.231 kb on - strand, within MIT1002_00214at 237.231 kb on - strand, within MIT1002_00214at 237.265 kb on + strand, within MIT1002_00214at 237.275 kb on + strand, within MIT1002_00214at 237.283 kb on - strand, within MIT1002_00214at 237.292 kb on + strand, within MIT1002_00214at 237.292 kb on + strand, within MIT1002_00214at 237.292 kb on + strand, within MIT1002_00214at 237.292 kb on + strand, within MIT1002_00214at 237.300 kb on - strand, within MIT1002_00214at 237.300 kb on - strand, within MIT1002_00214at 237.300 kb on - strand, within MIT1002_00214at 237.359 kb on - strand, within MIT1002_00214

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6
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234,968 + MIT1002_00211 0.28 +3.2
234,968 + MIT1002_00211 0.28 +0.5
234,976 - MIT1002_00211 0.28 +0.4
234,976 - MIT1002_00211 0.28 +0.1
234,976 - MIT1002_00211 0.28 +2.0
234,990 + MIT1002_00211 0.30 +2.0
234,998 - MIT1002_00211 0.30 -0.1
235,026 - MIT1002_00211 0.32 +1.7
235,091 + MIT1002_00211 0.38 +1.1
235,152 - MIT1002_00211 0.43 +1.4
235,261 + MIT1002_00211 0.51 +2.4
235,315 - MIT1002_00211 0.56 +1.1
235,427 + MIT1002_00211 0.65 +0.0
235,660 + MIT1002_00211 0.84 +1.4
235,668 - MIT1002_00211 0.84 +2.0
235,708 - MIT1002_00211 0.88 +0.7
235,708 - MIT1002_00211 0.88 +1.0
235,784 + +1.1
235,887 - -1.4
235,953 - MIT1002_00212 0.13 -0.8
235,993 + MIT1002_00212 0.21 -1.4
236,028 + MIT1002_00212 0.28 -1.7
236,036 - MIT1002_00212 0.30 +1.6
236,054 + MIT1002_00212 0.34 -4.3
236,072 - MIT1002_00212 0.37 +1.1
236,123 + MIT1002_00212 0.47 +0.7
236,133 + MIT1002_00212 0.49 -2.0
236,133 + MIT1002_00212 0.49 -0.1
236,141 - MIT1002_00212 0.51 +1.7
236,205 - MIT1002_00212 0.64 +0.9
236,294 + MIT1002_00212 0.82 -0.5
236,446 + -0.0
236,473 - +0.2
236,508 + MIT1002_00213 0.14 +0.6
236,518 + MIT1002_00213 0.15 +0.4
236,583 + MIT1002_00213 0.27 -0.2
236,613 + MIT1002_00213 0.32 -0.2
236,613 + MIT1002_00213 0.32 +0.1
236,621 - MIT1002_00213 0.33 +0.7
236,621 - MIT1002_00213 0.33 +2.7
236,621 - MIT1002_00213 0.33 +0.1
236,621 - MIT1002_00213 0.33 -0.1
236,629 - MIT1002_00213 0.34 +1.4
236,685 + MIT1002_00213 0.44 +0.8
236,702 + MIT1002_00213 0.47 -0.6
236,706 - MIT1002_00213 0.47 +1.5
236,719 + MIT1002_00213 0.50 +0.3
236,727 - MIT1002_00213 0.51 -0.0
236,869 - MIT1002_00213 0.75 +2.2
236,934 - MIT1002_00213 0.86 +3.6
236,999 + +0.5
237,062 + +2.2
237,070 - +2.1
237,070 - +2.3
237,070 - +2.3
237,107 - MIT1002_00214 0.14 +1.2
237,119 + MIT1002_00214 0.16 +2.2
237,174 - MIT1002_00214 0.27 -0.6
237,193 - MIT1002_00214 0.30 -0.6
237,231 - MIT1002_00214 0.38 +0.4
237,231 - MIT1002_00214 0.38 -0.1
237,265 + MIT1002_00214 0.44 +0.4
237,275 + MIT1002_00214 0.46 +1.9
237,283 - MIT1002_00214 0.48 +2.3
237,292 + MIT1002_00214 0.50 +1.1
237,292 + MIT1002_00214 0.50 +0.8
237,292 + MIT1002_00214 0.50 -1.9
237,292 + MIT1002_00214 0.50 +1.9
237,300 - MIT1002_00214 0.51 +1.7
237,300 - MIT1002_00214 0.51 +1.1
237,300 - MIT1002_00214 0.51 +0.8
237,359 - MIT1002_00214 0.63 +3.7

Or see this region's nucleotide sequence