Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00210 and MIT1002_00211 overlap by 1 nucleotides MIT1002_00211 and MIT1002_00212 are separated by 27 nucleotides MIT1002_00212 and MIT1002_00213 are separated by 44 nucleotides
MIT1002_00210: MIT1002_00210 - Type II traffic warden ATPase, at 232,913 to 234,625
_00210
MIT1002_00211: MIT1002_00211 - General secretion pathway protein F, at 234,625 to 235,860
_00211
MIT1002_00212: MIT1002_00212 - hypothetical protein, at 235,888 to 236,382
_00212
MIT1002_00213: MIT1002_00213 - Pilin, at 236,427 to 237,014
_00213
Position (kb) 234
235
236 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 233.644 kb on - strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.703 kb on + strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.711 kb on - strand, within MIT1002_00210 at 233.725 kb on - strand, within MIT1002_00210 at 233.735 kb on - strand, within MIT1002_00210 at 233.771 kb on - strand, within MIT1002_00210 at 233.775 kb on + strand, within MIT1002_00210 at 233.783 kb on + strand, within MIT1002_00210 at 233.784 kb on + strand, within MIT1002_00210 at 233.848 kb on - strand, within MIT1002_00210 at 233.859 kb on - strand, within MIT1002_00210 at 233.878 kb on + strand, within MIT1002_00210 at 233.908 kb on + strand, within MIT1002_00210 at 233.911 kb on - strand, within MIT1002_00210 at 233.929 kb on + strand, within MIT1002_00210 at 233.929 kb on + strand, within MIT1002_00210 at 233.947 kb on + strand, within MIT1002_00210 at 234.007 kb on - strand, within MIT1002_00210 at 234.053 kb on - strand, within MIT1002_00210 at 234.058 kb on - strand, within MIT1002_00210 at 234.080 kb on - strand, within MIT1002_00210 at 234.186 kb on + strand, within MIT1002_00210 at 234.186 kb on - strand, within MIT1002_00210 at 234.225 kb on - strand, within MIT1002_00210 at 234.247 kb on + strand, within MIT1002_00210 at 234.256 kb on + strand, within MIT1002_00210 at 234.283 kb on - strand, within MIT1002_00210 at 234.362 kb on - strand, within MIT1002_00210 at 234.387 kb on + strand, within MIT1002_00210 at 234.387 kb on + strand, within MIT1002_00210 at 234.539 kb on + strand at 234.539 kb on + strand at 234.539 kb on + strand at 234.544 kb on + strand at 234.544 kb on + strand at 234.547 kb on - strand at 234.547 kb on - strand at 234.547 kb on - strand at 234.547 kb on - strand at 234.549 kb on + strand at 234.549 kb on + strand at 234.552 kb on - strand at 234.554 kb on + strand at 234.559 kb on + strand at 234.562 kb on - strand at 234.583 kb on - strand at 234.591 kb on - strand at 234.591 kb on - strand at 234.633 kb on + strand at 234.650 kb on + strand at 234.658 kb on - strand at 234.710 kb on - strand at 234.830 kb on - strand, within MIT1002_00211 at 234.861 kb on - strand, within MIT1002_00211 at 234.968 kb on + strand, within MIT1002_00211 at 234.968 kb on + strand, within MIT1002_00211 at 234.976 kb on - strand, within MIT1002_00211 at 234.976 kb on - strand, within MIT1002_00211 at 234.976 kb on - strand, within MIT1002_00211 at 234.990 kb on + strand, within MIT1002_00211 at 234.998 kb on - strand, within MIT1002_00211 at 235.026 kb on - strand, within MIT1002_00211 at 235.091 kb on + strand, within MIT1002_00211 at 235.152 kb on - strand, within MIT1002_00211 at 235.261 kb on + strand, within MIT1002_00211 at 235.315 kb on - strand, within MIT1002_00211 at 235.427 kb on + strand, within MIT1002_00211 at 235.660 kb on + strand, within MIT1002_00211 at 235.668 kb on - strand, within MIT1002_00211 at 235.708 kb on - strand, within MIT1002_00211 at 235.708 kb on - strand, within MIT1002_00211 at 235.784 kb on + strand at 235.887 kb on - strand at 235.953 kb on - strand, within MIT1002_00212 at 235.993 kb on + strand, within MIT1002_00212 at 236.028 kb on + strand, within MIT1002_00212 at 236.036 kb on - strand, within MIT1002_00212 at 236.054 kb on + strand, within MIT1002_00212 at 236.072 kb on - strand, within MIT1002_00212 at 236.123 kb on + strand, within MIT1002_00212 at 236.133 kb on + strand, within MIT1002_00212 at 236.133 kb on + strand, within MIT1002_00212 at 236.141 kb on - strand, within MIT1002_00212 at 236.205 kb on - strand, within MIT1002_00212 at 236.294 kb on + strand, within MIT1002_00212 at 236.446 kb on + strand at 236.473 kb on - strand at 236.508 kb on + strand, within MIT1002_00213 at 236.518 kb on + strand, within MIT1002_00213 at 236.583 kb on + strand, within MIT1002_00213 at 236.613 kb on + strand, within MIT1002_00213 at 236.613 kb on + strand, within MIT1002_00213 at 236.621 kb on - strand, within MIT1002_00213 at 236.621 kb on - strand, within MIT1002_00213 at 236.621 kb on - strand, within MIT1002_00213 at 236.621 kb on - strand, within MIT1002_00213 at 236.629 kb on - strand, within MIT1002_00213 at 236.685 kb on + strand, within MIT1002_00213 at 236.702 kb on + strand, within MIT1002_00213 at 236.706 kb on - strand, within MIT1002_00213 at 236.719 kb on + strand, within MIT1002_00213 at 236.727 kb on - strand, within MIT1002_00213
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6 remove 233,644 - MIT1002_00210 0.43 +1.3 233,703 + MIT1002_00210 0.46 +1.2 233,703 + MIT1002_00210 0.46 +2.7 233,703 + MIT1002_00210 0.46 +0.0 233,703 + MIT1002_00210 0.46 +1.4 233,703 + MIT1002_00210 0.46 +0.8 233,703 + MIT1002_00210 0.46 +1.9 233,703 + MIT1002_00210 0.46 +1.6 233,703 + MIT1002_00210 0.46 +1.3 233,703 + MIT1002_00210 0.46 +1.6 233,703 + MIT1002_00210 0.46 -1.4 233,703 + MIT1002_00210 0.46 +1.1 233,703 + MIT1002_00210 0.46 +0.2 233,703 + MIT1002_00210 0.46 +1.2 233,703 + MIT1002_00210 0.46 +1.7 233,703 + MIT1002_00210 0.46 +1.0 233,703 + MIT1002_00210 0.46 +1.8 233,703 + MIT1002_00210 0.46 +1.3 233,703 + MIT1002_00210 0.46 +0.3 233,703 + MIT1002_00210 0.46 +0.8 233,703 + MIT1002_00210 0.46 -0.8 233,711 - MIT1002_00210 0.47 +2.1 233,711 - MIT1002_00210 0.47 -0.7 233,711 - MIT1002_00210 0.47 +1.5 233,711 - MIT1002_00210 0.47 +3.0 233,711 - MIT1002_00210 0.47 +1.7 233,711 - MIT1002_00210 0.47 +1.3 233,711 - MIT1002_00210 0.47 +1.9 233,711 - MIT1002_00210 0.47 +0.6 233,711 - MIT1002_00210 0.47 +1.6 233,711 - MIT1002_00210 0.47 +0.8 233,711 - MIT1002_00210 0.47 +0.4 233,711 - MIT1002_00210 0.47 +1.7 233,711 - MIT1002_00210 0.47 +2.4 233,711 - MIT1002_00210 0.47 +0.9 233,711 - MIT1002_00210 0.47 +1.4 233,711 - MIT1002_00210 0.47 +0.7 233,711 - MIT1002_00210 0.47 +1.3 233,711 - MIT1002_00210 0.47 +2.1 233,711 - MIT1002_00210 0.47 +2.6 233,711 - MIT1002_00210 0.47 -1.8 233,711 - MIT1002_00210 0.47 +1.7 233,711 - MIT1002_00210 0.47 +2.4 233,711 - MIT1002_00210 0.47 +0.6 233,725 - MIT1002_00210 0.47 +2.0 233,735 - MIT1002_00210 0.48 +2.0 233,771 - MIT1002_00210 0.50 +0.9 233,775 + MIT1002_00210 0.50 +1.1 233,783 + MIT1002_00210 0.51 -0.1 233,784 + MIT1002_00210 0.51 +1.3 233,848 - MIT1002_00210 0.55 +1.3 233,859 - MIT1002_00210 0.55 +1.3 233,878 + MIT1002_00210 0.56 +0.4 233,908 + MIT1002_00210 0.58 +0.6 233,911 - MIT1002_00210 0.58 +0.1 233,929 + MIT1002_00210 0.59 +1.5 233,929 + MIT1002_00210 0.59 +0.8 233,947 + MIT1002_00210 0.60 +1.8 234,007 - MIT1002_00210 0.64 +3.3 234,053 - MIT1002_00210 0.67 +1.5 234,058 - MIT1002_00210 0.67 -0.9 234,080 - MIT1002_00210 0.68 +0.3 234,186 + MIT1002_00210 0.74 +1.6 234,186 - MIT1002_00210 0.74 +0.7 234,225 - MIT1002_00210 0.77 +1.6 234,247 + MIT1002_00210 0.78 +1.5 234,256 + MIT1002_00210 0.78 +0.8 234,283 - MIT1002_00210 0.80 -0.0 234,362 - MIT1002_00210 0.85 +1.1 234,387 + MIT1002_00210 0.86 +2.8 234,387 + MIT1002_00210 0.86 +0.9 234,539 + +0.9 234,539 + +1.3 234,539 + +2.2 234,544 + +2.5 234,544 + +1.8 234,547 - -1.1 234,547 - +2.2 234,547 - +0.8 234,547 - +0.4 234,549 + +3.0 234,549 + +3.2 234,552 - +1.3 234,554 + +2.2 234,559 + +1.3 234,562 - +1.6 234,583 - +0.8 234,591 - +1.0 234,591 - +1.7 234,633 + -0.4 234,650 + +1.8 234,658 - +1.5 234,710 - +1.4 234,830 - MIT1002_00211 0.17 +1.6 234,861 - MIT1002_00211 0.19 +1.1 234,968 + MIT1002_00211 0.28 +3.2 234,968 + MIT1002_00211 0.28 +0.5 234,976 - MIT1002_00211 0.28 +0.4 234,976 - MIT1002_00211 0.28 +0.1 234,976 - MIT1002_00211 0.28 +2.0 234,990 + MIT1002_00211 0.30 +2.0 234,998 - MIT1002_00211 0.30 -0.1 235,026 - MIT1002_00211 0.32 +1.7 235,091 + MIT1002_00211 0.38 +1.1 235,152 - MIT1002_00211 0.43 +1.4 235,261 + MIT1002_00211 0.51 +2.4 235,315 - MIT1002_00211 0.56 +1.1 235,427 + MIT1002_00211 0.65 +0.0 235,660 + MIT1002_00211 0.84 +1.4 235,668 - MIT1002_00211 0.84 +2.0 235,708 - MIT1002_00211 0.88 +0.7 235,708 - MIT1002_00211 0.88 +1.0 235,784 + +1.1 235,887 - -1.4 235,953 - MIT1002_00212 0.13 -0.8 235,993 + MIT1002_00212 0.21 -1.4 236,028 + MIT1002_00212 0.28 -1.7 236,036 - MIT1002_00212 0.30 +1.6 236,054 + MIT1002_00212 0.34 -4.3 236,072 - MIT1002_00212 0.37 +1.1 236,123 + MIT1002_00212 0.47 +0.7 236,133 + MIT1002_00212 0.49 -2.0 236,133 + MIT1002_00212 0.49 -0.1 236,141 - MIT1002_00212 0.51 +1.7 236,205 - MIT1002_00212 0.64 +0.9 236,294 + MIT1002_00212 0.82 -0.5 236,446 + -0.0 236,473 - +0.2 236,508 + MIT1002_00213 0.14 +0.6 236,518 + MIT1002_00213 0.15 +0.4 236,583 + MIT1002_00213 0.27 -0.2 236,613 + MIT1002_00213 0.32 -0.2 236,613 + MIT1002_00213 0.32 +0.1 236,621 - MIT1002_00213 0.33 +0.7 236,621 - MIT1002_00213 0.33 +2.7 236,621 - MIT1002_00213 0.33 +0.1 236,621 - MIT1002_00213 0.33 -0.1 236,629 - MIT1002_00213 0.34 +1.4 236,685 + MIT1002_00213 0.44 +0.8 236,702 + MIT1002_00213 0.47 -0.6 236,706 - MIT1002_00213 0.47 +1.5 236,719 + MIT1002_00213 0.50 +0.3 236,727 - MIT1002_00213 0.51 -0.0
Or see this region's nucleotide sequence