Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00186

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00185 and MIT1002_00186 are separated by 148 nucleotidesMIT1002_00186 and MIT1002_00187 are separated by 328 nucleotides MIT1002_00185: MIT1002_00185 - hypothetical protein, at 200,650 to 201,978 _00185 MIT1002_00186: MIT1002_00186 - Mgl repressor and galactose ultrainduction factor, at 202,127 to 203,128 _00186 MIT1002_00187: MIT1002_00187 - Aldose 1-epimerase precursor, at 203,457 to 204,476 _00187 Position (kb) 202 203 204Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 202.067 kb on + strandat 202.124 kb on + strandat 202.124 kb on + strandat 202.131 kb on + strandat 202.224 kb on + strandat 202.270 kb on - strand, within MIT1002_00186at 202.284 kb on + strand, within MIT1002_00186at 202.292 kb on - strand, within MIT1002_00186at 202.301 kb on + strand, within MIT1002_00186at 202.324 kb on - strand, within MIT1002_00186at 202.367 kb on + strand, within MIT1002_00186at 202.375 kb on - strand, within MIT1002_00186at 202.447 kb on - strand, within MIT1002_00186at 202.458 kb on + strand, within MIT1002_00186at 202.462 kb on - strand, within MIT1002_00186at 202.505 kb on + strand, within MIT1002_00186at 202.538 kb on - strand, within MIT1002_00186at 202.540 kb on + strand, within MIT1002_00186at 202.560 kb on - strand, within MIT1002_00186at 202.605 kb on - strand, within MIT1002_00186at 202.616 kb on + strand, within MIT1002_00186at 202.709 kb on + strand, within MIT1002_00186at 202.709 kb on + strand, within MIT1002_00186at 202.717 kb on - strand, within MIT1002_00186at 202.746 kb on - strand, within MIT1002_00186at 202.763 kb on - strand, within MIT1002_00186at 202.768 kb on - strand, within MIT1002_00186at 202.776 kb on - strand, within MIT1002_00186at 202.807 kb on - strand, within MIT1002_00186at 202.807 kb on - strand, within MIT1002_00186at 202.845 kb on - strand, within MIT1002_00186at 202.895 kb on + strand, within MIT1002_00186at 202.895 kb on + strand, within MIT1002_00186at 202.903 kb on - strand, within MIT1002_00186at 202.903 kb on - strand, within MIT1002_00186at 202.940 kb on + strand, within MIT1002_00186at 202.986 kb on - strand, within MIT1002_00186at 203.047 kb on + strandat 203.055 kb on - strandat 203.055 kb on - strandat 203.055 kb on - strandat 203.055 kb on - strandat 203.068 kb on + strandat 203.068 kb on + strandat 203.068 kb on + strandat 203.068 kb on + strandat 203.076 kb on - strandat 203.076 kb on - strandat 203.076 kb on - strandat 203.235 kb on - strandat 203.265 kb on + strandat 203.292 kb on + strandat 203.321 kb on - strandat 203.358 kb on - strandat 203.509 kb on + strandat 203.531 kb on + strandat 203.531 kb on + strandat 203.539 kb on + strandat 203.544 kb on + strandat 203.614 kb on - strand, within MIT1002_00187at 203.634 kb on + strand, within MIT1002_00187at 203.634 kb on + strand, within MIT1002_00187at 203.634 kb on + strand, within MIT1002_00187at 203.634 kb on + strand, within MIT1002_00187at 203.639 kb on + strand, within MIT1002_00187at 203.642 kb on - strand, within MIT1002_00187at 203.642 kb on - strand, within MIT1002_00187at 203.642 kb on - strand, within MIT1002_00187at 203.644 kb on + strand, within MIT1002_00187at 203.647 kb on - strand, within MIT1002_00187at 203.689 kb on - strand, within MIT1002_00187at 203.720 kb on + strand, within MIT1002_00187at 203.720 kb on + strand, within MIT1002_00187at 203.725 kb on + strand, within MIT1002_00187at 203.728 kb on - strand, within MIT1002_00187at 203.730 kb on + strand, within MIT1002_00187at 203.730 kb on + strand, within MIT1002_00187at 203.730 kb on + strand, within MIT1002_00187at 203.738 kb on - strand, within MIT1002_00187at 203.738 kb on - strand, within MIT1002_00187at 203.738 kb on - strand, within MIT1002_00187at 203.738 kb on - strand, within MIT1002_00187at 203.771 kb on - strand, within MIT1002_00187at 203.798 kb on + strand, within MIT1002_00187at 203.806 kb on - strand, within MIT1002_00187at 203.827 kb on - strand, within MIT1002_00187at 203.858 kb on - strand, within MIT1002_00187at 203.868 kb on - strand, within MIT1002_00187at 203.871 kb on + strand, within MIT1002_00187at 203.980 kb on + strand, within MIT1002_00187at 204.034 kb on - strand, within MIT1002_00187at 204.034 kb on - strand, within MIT1002_00187

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6
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202,067 + +1.5
202,124 + -1.3
202,124 + -0.3
202,131 + +4.3
202,224 + +3.7
202,270 - MIT1002_00186 0.14 +4.0
202,284 + MIT1002_00186 0.16 +6.3
202,292 - MIT1002_00186 0.16 +5.0
202,301 + MIT1002_00186 0.17 +5.2
202,324 - MIT1002_00186 0.20 +4.9
202,367 + MIT1002_00186 0.24 +5.0
202,375 - MIT1002_00186 0.25 +4.9
202,447 - MIT1002_00186 0.32 +4.6
202,458 + MIT1002_00186 0.33 +4.2
202,462 - MIT1002_00186 0.33 +6.2
202,505 + MIT1002_00186 0.38 +6.4
202,538 - MIT1002_00186 0.41 +4.8
202,540 + MIT1002_00186 0.41 +4.3
202,560 - MIT1002_00186 0.43 +5.2
202,605 - MIT1002_00186 0.48 +5.0
202,616 + MIT1002_00186 0.49 +4.9
202,709 + MIT1002_00186 0.58 +3.8
202,709 + MIT1002_00186 0.58 +5.7
202,717 - MIT1002_00186 0.59 +4.6
202,746 - MIT1002_00186 0.62 +5.0
202,763 - MIT1002_00186 0.63 +4.6
202,768 - MIT1002_00186 0.64 +4.8
202,776 - MIT1002_00186 0.65 +5.0
202,807 - MIT1002_00186 0.68 -3.1
202,807 - MIT1002_00186 0.68 +5.8
202,845 - MIT1002_00186 0.72 +6.3
202,895 + MIT1002_00186 0.77 +5.1
202,895 + MIT1002_00186 0.77 +2.8
202,903 - MIT1002_00186 0.77 +4.5
202,903 - MIT1002_00186 0.77 +4.4
202,940 + MIT1002_00186 0.81 +5.3
202,986 - MIT1002_00186 0.86 +4.8
203,047 + +5.5
203,055 - +6.1
203,055 - +5.3
203,055 - +5.2
203,055 - +5.2
203,068 + +3.8
203,068 + +5.4
203,068 + +6.2
203,068 + +4.6
203,076 - +6.3
203,076 - +4.5
203,076 - +4.4
203,235 - -2.1
203,265 + +1.5
203,292 + -1.7
203,321 - +0.7
203,358 - -1.4
203,509 + +4.8
203,531 + +5.1
203,531 + +4.9
203,539 + +4.9
203,544 + +5.3
203,614 - MIT1002_00187 0.15 +4.8
203,634 + MIT1002_00187 0.17 +4.4
203,634 + MIT1002_00187 0.17 +5.5
203,634 + MIT1002_00187 0.17 +5.3
203,634 + MIT1002_00187 0.17 +5.0
203,639 + MIT1002_00187 0.18 +5.0
203,642 - MIT1002_00187 0.18 +5.2
203,642 - MIT1002_00187 0.18 +4.7
203,642 - MIT1002_00187 0.18 +5.8
203,644 + MIT1002_00187 0.18 +4.7
203,647 - MIT1002_00187 0.19 +4.5
203,689 - MIT1002_00187 0.23 +5.2
203,720 + MIT1002_00187 0.26 +4.9
203,720 + MIT1002_00187 0.26 +5.1
203,725 + MIT1002_00187 0.26 +5.0
203,728 - MIT1002_00187 0.27 +4.7
203,730 + MIT1002_00187 0.27 +5.2
203,730 + MIT1002_00187 0.27 +3.9
203,730 + MIT1002_00187 0.27 +4.9
203,738 - MIT1002_00187 0.28 +6.8
203,738 - MIT1002_00187 0.28 +4.7
203,738 - MIT1002_00187 0.28 +4.8
203,738 - MIT1002_00187 0.28 +4.7
203,771 - MIT1002_00187 0.31 +5.5
203,798 + MIT1002_00187 0.33 +5.7
203,806 - MIT1002_00187 0.34 +5.1
203,827 - MIT1002_00187 0.36 +4.7
203,858 - MIT1002_00187 0.39 +4.9
203,868 - MIT1002_00187 0.40 +6.2
203,871 + MIT1002_00187 0.41 +4.8
203,980 + MIT1002_00187 0.51 +4.8
204,034 - MIT1002_00187 0.57 +5.5
204,034 - MIT1002_00187 0.57 +6.0

Or see this region's nucleotide sequence