Experiment: planktonic; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS19035 and LRK53_RS19040 are separated by 82 nucleotides LRK53_RS19040 and LRK53_RS19045 are separated by 67 nucleotides LRK53_RS19045 and LRK53_RS19050 are separated by 68 nucleotides LRK53_RS19050 and LRK53_RS19055 are separated by 144 nucleotides
LRK53_RS19035: LRK53_RS19035 - DUF72 domain-containing protein, at 195,768 to 196,676
_RS19035
LRK53_RS19040: LRK53_RS19040 - hypothetical protein, at 196,759 to 197,139
_RS19040
LRK53_RS19045: LRK53_RS19045 - hypothetical protein, at 197,207 to 198,070
_RS19045
LRK53_RS19050: LRK53_RS19050 - hypothetical protein, at 198,139 to 198,804
_RS19050
LRK53_RS19055: LRK53_RS19055 - hypothetical protein, at 198,949 to 199,335
_RS19055
Position (kb) 197
198
199 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 196.224 kb on + strand, within LRK53_RS19035 at 196.225 kb on - strand, within LRK53_RS19035 at 196.230 kb on + strand, within LRK53_RS19035 at 196.231 kb on - strand, within LRK53_RS19035 at 196.509 kb on + strand, within LRK53_RS19035 at 196.509 kb on + strand, within LRK53_RS19035 at 196.510 kb on - strand, within LRK53_RS19035 at 196.515 kb on + strand, within LRK53_RS19035 at 196.813 kb on + strand, within LRK53_RS19040 at 196.813 kb on + strand, within LRK53_RS19040 at 196.813 kb on + strand, within LRK53_RS19040 at 196.813 kb on + strand, within LRK53_RS19040 at 196.813 kb on + strand, within LRK53_RS19040 at 196.813 kb on + strand, within LRK53_RS19040 at 196.813 kb on + strand, within LRK53_RS19040 at 196.813 kb on + strand, within LRK53_RS19040 at 196.813 kb on + strand, within LRK53_RS19040 at 196.813 kb on + strand, within LRK53_RS19040 at 196.813 kb on + strand, within LRK53_RS19040 at 196.813 kb on + strand, within LRK53_RS19040 at 196.813 kb on + strand, within LRK53_RS19040 at 196.813 kb on + strand, within LRK53_RS19040 at 196.813 kb on + strand, within LRK53_RS19040 at 196.813 kb on + strand, within LRK53_RS19040 at 196.813 kb on + strand, within LRK53_RS19040 at 196.813 kb on + strand, within LRK53_RS19040 at 196.813 kb on + strand, within LRK53_RS19040 at 196.813 kb on + strand, within LRK53_RS19040 at 196.813 kb on + strand, within LRK53_RS19040 at 196.813 kb on + strand, within LRK53_RS19040 at 196.813 kb on + strand, within LRK53_RS19040 at 196.813 kb on + strand, within LRK53_RS19040 at 196.813 kb on + strand, within LRK53_RS19040 at 196.813 kb on + strand, within LRK53_RS19040 at 196.813 kb on + strand, within LRK53_RS19040 at 196.813 kb on + strand, within LRK53_RS19040 at 196.813 kb on + strand, within LRK53_RS19040 at 196.813 kb on + strand, within LRK53_RS19040 at 196.813 kb on + strand, within LRK53_RS19040 at 196.814 kb on - strand, within LRK53_RS19040 at 196.814 kb on - strand, within LRK53_RS19040 at 196.814 kb on - strand, within LRK53_RS19040 at 196.814 kb on - strand, within LRK53_RS19040 at 196.814 kb on - strand, within LRK53_RS19040 at 196.814 kb on - strand, within LRK53_RS19040 at 196.814 kb on - strand, within LRK53_RS19040 at 196.814 kb on - strand, within LRK53_RS19040 at 196.814 kb on - strand, within LRK53_RS19040 at 196.814 kb on - strand, within LRK53_RS19040 at 196.814 kb on - strand, within LRK53_RS19040 at 196.814 kb on - strand, within LRK53_RS19040 at 196.814 kb on - strand, within LRK53_RS19040 at 196.814 kb on - strand, within LRK53_RS19040 at 196.814 kb on - strand, within LRK53_RS19040 at 196.814 kb on - strand, within LRK53_RS19040 at 196.814 kb on - strand, within LRK53_RS19040 at 196.814 kb on - strand, within LRK53_RS19040 at 196.814 kb on - strand, within LRK53_RS19040 at 196.814 kb on - strand, within LRK53_RS19040 at 196.814 kb on - strand, within LRK53_RS19040 at 196.814 kb on - strand, within LRK53_RS19040 at 196.814 kb on - strand, within LRK53_RS19040 at 196.814 kb on - strand, within LRK53_RS19040 at 196.814 kb on - strand, within LRK53_RS19040 at 196.907 kb on - strand, within LRK53_RS19040 at 196.907 kb on - strand, within LRK53_RS19040 at 196.933 kb on + strand, within LRK53_RS19040 at 196.934 kb on - strand, within LRK53_RS19040 at 196.934 kb on - strand, within LRK53_RS19040 at 196.967 kb on + strand, within LRK53_RS19040 at 196.968 kb on - strand, within LRK53_RS19040 at 196.968 kb on - strand, within LRK53_RS19040 at 196.968 kb on - strand, within LRK53_RS19040 at 196.999 kb on + strand, within LRK53_RS19040 at 196.999 kb on + strand, within LRK53_RS19040 at 196.999 kb on + strand, within LRK53_RS19040 at 196.999 kb on + strand, within LRK53_RS19040 at 196.999 kb on + strand, within LRK53_RS19040 at 196.999 kb on + strand, within LRK53_RS19040 at 196.999 kb on + strand, within LRK53_RS19040 at 197.000 kb on - strand, within LRK53_RS19040 at 197.000 kb on - strand, within LRK53_RS19040 at 197.000 kb on - strand, within LRK53_RS19040 at 197.000 kb on - strand, within LRK53_RS19040 at 197.000 kb on - strand, within LRK53_RS19040 at 197.000 kb on - strand, within LRK53_RS19040 at 197.050 kb on - strand, within LRK53_RS19040 at 197.066 kb on - strand, within LRK53_RS19040 at 197.066 kb on - strand, within LRK53_RS19040 at 197.137 kb on + strand at 197.137 kb on + strand at 197.137 kb on + strand at 197.137 kb on + strand at 197.201 kb on + strand at 197.201 kb on + strand at 197.201 kb on + strand at 197.201 kb on + strand at 197.201 kb on + strand at 197.201 kb on + strand at 197.202 kb on - strand at 197.202 kb on - strand at 197.202 kb on - strand at 197.202 kb on - strand at 197.202 kb on - strand at 197.202 kb on - strand at 197.202 kb on - strand at 197.202 kb on - strand at 197.202 kb on - strand at 197.202 kb on - strand at 197.202 kb on - strand at 197.202 kb on - strand at 197.426 kb on + strand, within LRK53_RS19045 at 197.427 kb on - strand, within LRK53_RS19045 at 197.488 kb on + strand, within LRK53_RS19045 at 197.561 kb on + strand, within LRK53_RS19045 at 197.562 kb on - strand, within LRK53_RS19045 at 197.562 kb on - strand, within LRK53_RS19045 at 197.562 kb on - strand, within LRK53_RS19045 at 197.627 kb on + strand, within LRK53_RS19045 at 197.627 kb on + strand, within LRK53_RS19045 at 197.628 kb on - strand, within LRK53_RS19045 at 197.735 kb on + strand, within LRK53_RS19045 at 197.736 kb on - strand, within LRK53_RS19045 at 197.736 kb on - strand, within LRK53_RS19045 at 197.736 kb on - strand, within LRK53_RS19045 at 197.865 kb on + strand, within LRK53_RS19045 at 197.865 kb on + strand, within LRK53_RS19045 at 197.967 kb on + strand, within LRK53_RS19045 at 197.967 kb on + strand, within LRK53_RS19045 at 197.968 kb on - strand, within LRK53_RS19045 at 197.968 kb on - strand, within LRK53_RS19045 at 198.098 kb on + strand at 198.098 kb on + strand at 198.099 kb on - strand at 198.320 kb on - strand, within LRK53_RS19050 at 198.490 kb on + strand, within LRK53_RS19050 at 198.490 kb on + strand, within LRK53_RS19050 at 198.490 kb on + strand, within LRK53_RS19050 at 198.491 kb on - strand, within LRK53_RS19050 at 198.491 kb on - strand, within LRK53_RS19050 at 198.550 kb on + strand, within LRK53_RS19050 at 198.550 kb on + strand, within LRK53_RS19050 at 198.550 kb on + strand, within LRK53_RS19050 at 198.550 kb on + strand, within LRK53_RS19050 at 198.551 kb on - strand, within LRK53_RS19050 at 198.657 kb on + strand, within LRK53_RS19050 at 198.658 kb on - strand, within LRK53_RS19050 at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.967 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Aluminum chloride 1mM remove 196,224 + LRK53_RS19035 0.50 -0.7 196,225 - LRK53_RS19035 0.50 -2.5 196,230 + LRK53_RS19035 0.51 +0.6 196,231 - LRK53_RS19035 0.51 -1.4 196,509 + LRK53_RS19035 0.82 +0.4 196,509 + LRK53_RS19035 0.82 -1.4 196,510 - LRK53_RS19035 0.82 +0.6 196,515 + LRK53_RS19035 0.82 -3.4 196,813 + LRK53_RS19040 0.14 -1.7 196,813 + LRK53_RS19040 0.14 -1.4 196,813 + LRK53_RS19040 0.14 +1.1 196,813 + LRK53_RS19040 0.14 -1.6 196,813 + LRK53_RS19040 0.14 -0.6 196,813 + LRK53_RS19040 0.14 -1.2 196,813 + LRK53_RS19040 0.14 -0.7 196,813 + LRK53_RS19040 0.14 -0.8 196,813 + LRK53_RS19040 0.14 +0.1 196,813 + LRK53_RS19040 0.14 -0.4 196,813 + LRK53_RS19040 0.14 +0.5 196,813 + LRK53_RS19040 0.14 -1.9 196,813 + LRK53_RS19040 0.14 -0.5 196,813 + LRK53_RS19040 0.14 +0.5 196,813 + LRK53_RS19040 0.14 +0.8 196,813 + LRK53_RS19040 0.14 -0.8 196,813 + LRK53_RS19040 0.14 -0.8 196,813 + LRK53_RS19040 0.14 -0.2 196,813 + LRK53_RS19040 0.14 +0.6 196,813 + LRK53_RS19040 0.14 +2.2 196,813 + LRK53_RS19040 0.14 -1.6 196,813 + LRK53_RS19040 0.14 -1.0 196,813 + LRK53_RS19040 0.14 -1.2 196,813 + LRK53_RS19040 0.14 -1.6 196,813 + LRK53_RS19040 0.14 -0.4 196,813 + LRK53_RS19040 0.14 -1.2 196,813 + LRK53_RS19040 0.14 -0.2 196,813 + LRK53_RS19040 0.14 -1.8 196,813 + LRK53_RS19040 0.14 -1.8 196,813 + LRK53_RS19040 0.14 +1.4 196,813 + LRK53_RS19040 0.14 +1.0 196,814 - LRK53_RS19040 0.14 +2.2 196,814 - LRK53_RS19040 0.14 -0.5 196,814 - LRK53_RS19040 0.14 -0.3 196,814 - LRK53_RS19040 0.14 -0.8 196,814 - LRK53_RS19040 0.14 -0.2 196,814 - LRK53_RS19040 0.14 +0.6 196,814 - LRK53_RS19040 0.14 +0.9 196,814 - LRK53_RS19040 0.14 -1.3 196,814 - LRK53_RS19040 0.14 +0.4 196,814 - LRK53_RS19040 0.14 -0.4 196,814 - LRK53_RS19040 0.14 -2.1 196,814 - LRK53_RS19040 0.14 -1.4 196,814 - LRK53_RS19040 0.14 -1.4 196,814 - LRK53_RS19040 0.14 -1.1 196,814 - LRK53_RS19040 0.14 -0.9 196,814 - LRK53_RS19040 0.14 -0.5 196,814 - LRK53_RS19040 0.14 +0.6 196,814 - LRK53_RS19040 0.14 -0.4 196,814 - LRK53_RS19040 0.14 +0.5 196,814 - LRK53_RS19040 0.14 -1.9 196,814 - LRK53_RS19040 0.14 -1.2 196,814 - LRK53_RS19040 0.14 -0.4 196,814 - LRK53_RS19040 0.14 -0.4 196,814 - LRK53_RS19040 0.14 +0.4 196,814 - LRK53_RS19040 0.14 +0.9 196,907 - LRK53_RS19040 0.39 -0.4 196,907 - LRK53_RS19040 0.39 +0.3 196,933 + LRK53_RS19040 0.46 -2.6 196,934 - LRK53_RS19040 0.46 +0.8 196,934 - LRK53_RS19040 0.46 -1.8 196,967 + LRK53_RS19040 0.55 -0.1 196,968 - LRK53_RS19040 0.55 -0.9 196,968 - LRK53_RS19040 0.55 -1.2 196,968 - LRK53_RS19040 0.55 -0.3 196,999 + LRK53_RS19040 0.63 +0.4 196,999 + LRK53_RS19040 0.63 -0.8 196,999 + LRK53_RS19040 0.63 -0.6 196,999 + LRK53_RS19040 0.63 -0.0 196,999 + LRK53_RS19040 0.63 -2.5 196,999 + LRK53_RS19040 0.63 -1.1 196,999 + LRK53_RS19040 0.63 -2.6 197,000 - LRK53_RS19040 0.63 +0.2 197,000 - LRK53_RS19040 0.63 +0.2 197,000 - LRK53_RS19040 0.63 -1.1 197,000 - LRK53_RS19040 0.63 +0.9 197,000 - LRK53_RS19040 0.63 -1.2 197,000 - LRK53_RS19040 0.63 +0.9 197,050 - LRK53_RS19040 0.76 -0.9 197,066 - LRK53_RS19040 0.81 -1.4 197,066 - LRK53_RS19040 0.81 -0.2 197,137 + -0.4 197,137 + +1.1 197,137 + -1.4 197,137 + -0.4 197,201 + -1.1 197,201 + -1.2 197,201 + -1.8 197,201 + -1.2 197,201 + -3.1 197,201 + -1.2 197,202 - -1.1 197,202 - -1.7 197,202 - -0.4 197,202 - +0.4 197,202 - -1.7 197,202 - -0.3 197,202 - +2.2 197,202 - -2.2 197,202 - -1.1 197,202 - -2.6 197,202 - +0.3 197,202 - +0.6 197,426 + LRK53_RS19045 0.25 +0.5 197,427 - LRK53_RS19045 0.25 -0.8 197,488 + LRK53_RS19045 0.33 -0.9 197,561 + LRK53_RS19045 0.41 -0.8 197,562 - LRK53_RS19045 0.41 -1.8 197,562 - LRK53_RS19045 0.41 -0.6 197,562 - LRK53_RS19045 0.41 -1.1 197,627 + LRK53_RS19045 0.49 -0.1 197,627 + LRK53_RS19045 0.49 +0.9 197,628 - LRK53_RS19045 0.49 -2.4 197,735 + LRK53_RS19045 0.61 -1.0 197,736 - LRK53_RS19045 0.61 -0.1 197,736 - LRK53_RS19045 0.61 -2.2 197,736 - LRK53_RS19045 0.61 -0.9 197,865 + LRK53_RS19045 0.76 -1.2 197,865 + LRK53_RS19045 0.76 -1.2 197,967 + LRK53_RS19045 0.88 -0.1 197,967 + LRK53_RS19045 0.88 -2.4 197,968 - LRK53_RS19045 0.88 -1.6 197,968 - LRK53_RS19045 0.88 -1.2 198,098 + -0.6 198,098 + -0.6 198,099 - -0.1 198,320 - LRK53_RS19050 0.27 +0.2 198,490 + LRK53_RS19050 0.53 -1.7 198,490 + LRK53_RS19050 0.53 -0.4 198,490 + LRK53_RS19050 0.53 -1.5 198,491 - LRK53_RS19050 0.53 -1.8 198,491 - LRK53_RS19050 0.53 +0.9 198,550 + LRK53_RS19050 0.62 +1.2 198,550 + LRK53_RS19050 0.62 -0.7 198,550 + LRK53_RS19050 0.62 -1.4 198,550 + LRK53_RS19050 0.62 -1.9 198,551 - LRK53_RS19050 0.62 -1.3 198,657 + LRK53_RS19050 0.78 +0.7 198,658 - LRK53_RS19050 0.78 -0.3 198,742 + -1.6 198,742 + -0.6 198,742 + -2.8 198,742 + -1.2 198,742 + -2.0 198,742 + -1.7 198,742 + +1.4 198,742 + +0.4 198,742 + -0.1 198,742 + -0.6 198,742 + -2.0 198,742 + -0.5 198,742 + -0.4 198,742 + +2.2 198,742 + +0.1 198,742 + -0.3 198,742 + +0.2 198,742 + -0.3 198,742 + +0.1 198,742 + -0.6 198,742 + -0.4 198,742 + -1.9 198,742 + -1.4 198,742 + -0.8 198,742 + +0.6 198,742 + -0.6 198,742 + +3.0 198,743 - -0.4 198,743 - -0.4 198,743 - -0.9 198,743 - -0.4 198,743 - +0.1 198,743 - -0.3 198,743 - -2.2 198,743 - -0.1 198,743 - -2.9 198,743 - -2.1 198,743 - -2.4 198,743 - -0.6 198,743 - -0.1 198,743 - +0.2 198,743 - -1.5 198,743 - -0.5 198,743 - -0.4 198,743 - -0.2 198,743 - -1.3 198,743 - -2.2 198,743 - -0.6 198,743 - -1.5 198,743 - +0.2 198,743 - -0.5 198,743 - +0.6 198,743 - +0.5 198,743 - +0.4 198,743 - +2.2 198,967 + -0.9
Or see this region's nucleotide sequence