Experiment: planktonic; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18695 and LRK53_RS18700 are separated by 97 nucleotides LRK53_RS18700 and LRK53_RS18705 are separated by 147 nucleotides LRK53_RS18705 and LRK53_RS18710 are separated by 90 nucleotides
LRK53_RS18695: LRK53_RS18695 - hypothetical protein, at 127,024 to 127,788
_RS18695
LRK53_RS18700: LRK53_RS18700 - H-NS histone family protein, at 127,886 to 128,320
_RS18700
LRK53_RS18705: LRK53_RS18705 - hypothetical protein, at 128,468 to 129,379
_RS18705
LRK53_RS18710: LRK53_RS18710 - DNA-binding protein, at 129,470 to 131,188
_RS18710
Position (kb) 128
129
130 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 127.523 kb on + strand, within LRK53_RS18695 at 127.523 kb on + strand, within LRK53_RS18695 at 127.524 kb on - strand, within LRK53_RS18695 at 127.524 kb on - strand, within LRK53_RS18695 at 127.635 kb on + strand, within LRK53_RS18695 at 127.636 kb on - strand, within LRK53_RS18695 at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.788 kb on + strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.789 kb on - strand at 127.821 kb on + strand at 127.826 kb on + strand at 127.827 kb on - strand at 127.827 kb on - strand at 127.827 kb on - strand at 127.827 kb on - strand at 127.827 kb on - strand at 127.830 kb on - strand at 127.880 kb on + strand at 127.880 kb on + strand at 127.881 kb on - strand at 127.881 kb on - strand at 127.936 kb on - strand, within LRK53_RS18700 at 127.936 kb on - strand, within LRK53_RS18700 at 128.108 kb on + strand, within LRK53_RS18700 at 128.109 kb on - strand, within LRK53_RS18700 at 128.221 kb on + strand, within LRK53_RS18700 at 128.318 kb on + strand at 128.318 kb on + strand at 128.318 kb on + strand at 128.318 kb on + strand at 128.319 kb on - strand at 128.319 kb on - strand at 128.319 kb on - strand at 128.319 kb on - strand at 128.413 kb on + strand at 128.413 kb on + strand at 128.413 kb on + strand at 128.413 kb on + strand at 128.414 kb on - strand at 128.414 kb on - strand at 128.414 kb on - strand at 128.498 kb on + strand at 128.498 kb on + strand at 128.498 kb on + strand at 128.499 kb on - strand at 128.540 kb on + strand at 128.540 kb on + strand at 128.540 kb on + strand at 128.541 kb on - strand at 128.541 kb on - strand at 128.541 kb on - strand at 128.541 kb on - strand at 128.541 kb on - strand at 128.629 kb on + strand, within LRK53_RS18705 at 128.629 kb on + strand, within LRK53_RS18705 at 128.629 kb on + strand, within LRK53_RS18705 at 128.629 kb on + strand, within LRK53_RS18705 at 128.629 kb on + strand, within LRK53_RS18705 at 128.629 kb on + strand, within LRK53_RS18705 at 128.629 kb on + strand, within LRK53_RS18705 at 128.629 kb on + strand, within LRK53_RS18705 at 128.630 kb on - strand, within LRK53_RS18705 at 128.630 kb on - strand, within LRK53_RS18705 at 128.630 kb on - strand, within LRK53_RS18705 at 128.630 kb on - strand, within LRK53_RS18705 at 128.630 kb on - strand, within LRK53_RS18705 at 128.630 kb on - strand, within LRK53_RS18705 at 128.700 kb on + strand, within LRK53_RS18705 at 128.700 kb on + strand, within LRK53_RS18705 at 128.728 kb on + strand, within LRK53_RS18705 at 128.728 kb on + strand, within LRK53_RS18705 at 128.728 kb on + strand, within LRK53_RS18705 at 128.728 kb on + strand, within LRK53_RS18705 at 128.728 kb on + strand, within LRK53_RS18705 at 128.728 kb on + strand, within LRK53_RS18705 at 128.728 kb on + strand, within LRK53_RS18705 at 128.728 kb on + strand, within LRK53_RS18705 at 128.729 kb on - strand, within LRK53_RS18705 at 128.729 kb on - strand, within LRK53_RS18705 at 128.729 kb on - strand, within LRK53_RS18705 at 128.729 kb on - strand, within LRK53_RS18705 at 128.729 kb on - strand, within LRK53_RS18705 at 128.909 kb on + strand, within LRK53_RS18705 at 128.929 kb on + strand, within LRK53_RS18705 at 128.929 kb on + strand, within LRK53_RS18705 at 128.929 kb on + strand, within LRK53_RS18705 at 128.929 kb on + strand, within LRK53_RS18705 at 128.929 kb on + strand, within LRK53_RS18705 at 128.929 kb on + strand, within LRK53_RS18705 at 128.929 kb on + strand, within LRK53_RS18705 at 128.930 kb on - strand, within LRK53_RS18705 at 128.930 kb on - strand, within LRK53_RS18705 at 128.930 kb on - strand, within LRK53_RS18705 at 128.930 kb on - strand, within LRK53_RS18705 at 128.930 kb on - strand, within LRK53_RS18705 at 129.006 kb on - strand, within LRK53_RS18705 at 129.041 kb on + strand, within LRK53_RS18705 at 129.041 kb on + strand, within LRK53_RS18705 at 129.169 kb on - strand, within LRK53_RS18705 at 129.172 kb on + strand, within LRK53_RS18705 at 129.172 kb on + strand, within LRK53_RS18705 at 129.172 kb on + strand, within LRK53_RS18705 at 129.172 kb on + strand, within LRK53_RS18705 at 129.173 kb on - strand, within LRK53_RS18705 at 129.412 kb on - strand at 129.412 kb on - strand at 130.368 kb on + strand, within LRK53_RS18710 at 130.368 kb on + strand, within LRK53_RS18710
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Aluminum chloride 1mM remove 127,523 + LRK53_RS18695 0.65 +1.2 127,523 + LRK53_RS18695 0.65 +0.9 127,524 - LRK53_RS18695 0.65 -1.7 127,524 - LRK53_RS18695 0.65 +0.8 127,635 + LRK53_RS18695 0.80 -1.2 127,636 - LRK53_RS18695 0.80 -0.5 127,788 + +0.9 127,788 + -1.9 127,788 + +0.6 127,788 + -0.8 127,788 + +3.6 127,788 + -0.4 127,788 + -3.6 127,788 + +1.0 127,788 + -0.4 127,788 + -2.6 127,788 + -0.6 127,788 + -1.2 127,788 + -0.9 127,788 + -1.3 127,788 + -1.6 127,789 - -0.2 127,789 - -2.1 127,789 - -1.9 127,789 - -2.6 127,789 - +0.2 127,789 - +0.9 127,789 - -0.1 127,789 - -0.1 127,789 - -1.9 127,789 - +0.2 127,789 - -0.9 127,789 - +0.5 127,789 - -0.1 127,789 - -0.9 127,789 - -1.9 127,789 - -0.5 127,789 - +0.2 127,821 + +0.4 127,826 + -1.7 127,827 - +0.1 127,827 - -1.9 127,827 - +1.2 127,827 - -2.6 127,827 - -0.8 127,830 - -0.9 127,880 + -1.6 127,880 + -0.2 127,881 - +0.3 127,881 - -0.6 127,936 - LRK53_RS18700 0.11 +0.2 127,936 - LRK53_RS18700 0.11 +1.0 128,108 + LRK53_RS18700 0.51 -3.2 128,109 - LRK53_RS18700 0.51 +0.0 128,221 + LRK53_RS18700 0.77 -0.6 128,318 + -0.6 128,318 + -1.2 128,318 + -2.0 128,318 + -1.4 128,319 - +0.6 128,319 - -1.4 128,319 - -1.1 128,319 - -0.6 128,413 + +0.0 128,413 + -0.4 128,413 + +1.4 128,413 + -2.6 128,414 - -0.6 128,414 - +0.3 128,414 - -1.2 128,498 + +0.5 128,498 + -0.1 128,498 + -0.4 128,499 - -0.0 128,540 + -0.6 128,540 + +0.8 128,540 + +1.2 128,541 - -0.4 128,541 - +0.6 128,541 - -0.1 128,541 - -1.4 128,541 - +2.1 128,629 + LRK53_RS18705 0.18 -0.8 128,629 + LRK53_RS18705 0.18 +0.5 128,629 + LRK53_RS18705 0.18 -1.6 128,629 + LRK53_RS18705 0.18 -2.7 128,629 + LRK53_RS18705 0.18 -0.1 128,629 + LRK53_RS18705 0.18 -0.1 128,629 + LRK53_RS18705 0.18 -0.6 128,629 + LRK53_RS18705 0.18 -0.5 128,630 - LRK53_RS18705 0.18 -0.6 128,630 - LRK53_RS18705 0.18 -0.1 128,630 - LRK53_RS18705 0.18 -1.2 128,630 - LRK53_RS18705 0.18 -1.2 128,630 - LRK53_RS18705 0.18 -0.6 128,630 - LRK53_RS18705 0.18 -1.2 128,700 + LRK53_RS18705 0.25 +1.8 128,700 + LRK53_RS18705 0.25 -1.1 128,728 + LRK53_RS18705 0.29 -1.6 128,728 + LRK53_RS18705 0.29 -0.9 128,728 + LRK53_RS18705 0.29 -0.4 128,728 + LRK53_RS18705 0.29 -1.2 128,728 + LRK53_RS18705 0.29 -0.2 128,728 + LRK53_RS18705 0.29 -0.8 128,728 + LRK53_RS18705 0.29 -0.8 128,728 + LRK53_RS18705 0.29 +2.0 128,729 - LRK53_RS18705 0.29 +0.6 128,729 - LRK53_RS18705 0.29 -1.1 128,729 - LRK53_RS18705 0.29 -1.2 128,729 - LRK53_RS18705 0.29 +1.1 128,729 - LRK53_RS18705 0.29 -1.1 128,909 + LRK53_RS18705 0.48 -0.1 128,929 + LRK53_RS18705 0.51 +0.2 128,929 + LRK53_RS18705 0.51 -1.0 128,929 + LRK53_RS18705 0.51 -0.4 128,929 + LRK53_RS18705 0.51 -2.0 128,929 + LRK53_RS18705 0.51 -0.8 128,929 + LRK53_RS18705 0.51 -0.2 128,929 + LRK53_RS18705 0.51 +0.2 128,930 - LRK53_RS18705 0.51 -0.7 128,930 - LRK53_RS18705 0.51 +1.2 128,930 - LRK53_RS18705 0.51 -2.0 128,930 - LRK53_RS18705 0.51 -1.8 128,930 - LRK53_RS18705 0.51 -0.3 129,006 - LRK53_RS18705 0.59 -1.2 129,041 + LRK53_RS18705 0.63 -0.7 129,041 + LRK53_RS18705 0.63 -0.4 129,169 - LRK53_RS18705 0.77 +1.1 129,172 + LRK53_RS18705 0.77 -2.0 129,172 + LRK53_RS18705 0.77 -3.1 129,172 + LRK53_RS18705 0.77 -1.8 129,172 + LRK53_RS18705 0.77 -0.6 129,173 - LRK53_RS18705 0.77 +0.1 129,412 - -0.2 129,412 - -1.6 130,368 + LRK53_RS18710 0.52 -0.8 130,368 + LRK53_RS18710 0.52 -2.1
Or see this region's nucleotide sequence