Experiment: planktonic; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18600 and LRK53_RS18605 are separated by 84 nucleotides LRK53_RS18605 and LRK53_RS18610 are separated by 25 nucleotides LRK53_RS18610 and LRK53_RS18615 are separated by 8 nucleotides
LRK53_RS18600: LRK53_RS18600 - MFS transporter, at 101,244 to 102,425
_RS18600
LRK53_RS18605: LRK53_RS18605 - HAMP domain-containing histidine kinase, at 102,510 to 103,718
_RS18605
LRK53_RS18610: LRK53_RS18610 - response regulator transcription factor, at 103,744 to 104,421
_RS18610
LRK53_RS18615: LRK53_RS18615 - efflux RND transporter permease subunit, at 104,430 to 107,564
_RS18615
Position (kb) 102
103
104 Strain fitness (log2 ratio) -2
-1
0
1
2 at 101.534 kb on + strand, within LRK53_RS18600 at 101.534 kb on + strand, within LRK53_RS18600 at 101.535 kb on - strand, within LRK53_RS18600 at 101.572 kb on + strand, within LRK53_RS18600 at 101.572 kb on + strand, within LRK53_RS18600 at 101.696 kb on + strand, within LRK53_RS18600 at 101.697 kb on - strand, within LRK53_RS18600 at 101.703 kb on - strand, within LRK53_RS18600 at 101.721 kb on + strand, within LRK53_RS18600 at 101.722 kb on - strand, within LRK53_RS18600 at 101.722 kb on - strand, within LRK53_RS18600 at 101.722 kb on - strand, within LRK53_RS18600 at 101.722 kb on - strand, within LRK53_RS18600 at 101.722 kb on - strand, within LRK53_RS18600 at 101.722 kb on - strand, within LRK53_RS18600 at 101.995 kb on + strand, within LRK53_RS18600 at 101.995 kb on + strand, within LRK53_RS18600 at 101.995 kb on + strand, within LRK53_RS18600 at 102.019 kb on + strand, within LRK53_RS18600 at 102.019 kb on + strand, within LRK53_RS18600 at 102.019 kb on + strand, within LRK53_RS18600 at 102.020 kb on - strand, within LRK53_RS18600 at 102.181 kb on + strand, within LRK53_RS18600 at 102.181 kb on + strand, within LRK53_RS18600 at 102.182 kb on - strand, within LRK53_RS18600 at 102.456 kb on + strand at 102.458 kb on + strand at 102.458 kb on + strand at 102.458 kb on + strand at 102.458 kb on + strand at 102.458 kb on + strand at 102.459 kb on - strand at 102.459 kb on - strand at 102.478 kb on + strand at 102.479 kb on - strand at 102.479 kb on - strand at 102.479 kb on - strand at 102.718 kb on - strand, within LRK53_RS18605 at 102.718 kb on - strand, within LRK53_RS18605 at 102.760 kb on - strand, within LRK53_RS18605 at 102.760 kb on - strand, within LRK53_RS18605 at 102.953 kb on + strand, within LRK53_RS18605 at 102.954 kb on - strand, within LRK53_RS18605 at 103.023 kb on + strand, within LRK53_RS18605 at 103.024 kb on - strand, within LRK53_RS18605 at 103.024 kb on - strand, within LRK53_RS18605 at 103.024 kb on - strand, within LRK53_RS18605 at 103.319 kb on + strand, within LRK53_RS18605 at 103.319 kb on + strand, within LRK53_RS18605 at 103.319 kb on + strand, within LRK53_RS18605 at 103.319 kb on + strand, within LRK53_RS18605 at 103.320 kb on - strand, within LRK53_RS18605 at 103.320 kb on - strand, within LRK53_RS18605 at 103.320 kb on - strand, within LRK53_RS18605 at 103.320 kb on - strand, within LRK53_RS18605 at 103.323 kb on + strand, within LRK53_RS18605 at 103.323 kb on + strand, within LRK53_RS18605 at 103.323 kb on + strand, within LRK53_RS18605 at 103.324 kb on - strand, within LRK53_RS18605 at 103.399 kb on + strand, within LRK53_RS18605 at 103.399 kb on + strand, within LRK53_RS18605 at 103.399 kb on + strand, within LRK53_RS18605 at 103.399 kb on + strand, within LRK53_RS18605 at 103.400 kb on - strand, within LRK53_RS18605 at 103.400 kb on - strand, within LRK53_RS18605 at 103.400 kb on - strand, within LRK53_RS18605 at 103.435 kb on + strand, within LRK53_RS18605 at 103.435 kb on + strand, within LRK53_RS18605 at 103.435 kb on + strand, within LRK53_RS18605 at 103.435 kb on + strand, within LRK53_RS18605 at 103.435 kb on + strand, within LRK53_RS18605 at 103.435 kb on + strand, within LRK53_RS18605 at 103.435 kb on + strand, within LRK53_RS18605 at 103.435 kb on + strand, within LRK53_RS18605 at 103.436 kb on - strand, within LRK53_RS18605 at 103.436 kb on - strand, within LRK53_RS18605 at 103.436 kb on - strand, within LRK53_RS18605 at 103.436 kb on - strand, within LRK53_RS18605 at 103.436 kb on - strand, within LRK53_RS18605 at 103.436 kb on - strand, within LRK53_RS18605 at 103.436 kb on - strand, within LRK53_RS18605 at 103.436 kb on - strand, within LRK53_RS18605 at 103.436 kb on - strand, within LRK53_RS18605 at 103.464 kb on + strand, within LRK53_RS18605 at 103.464 kb on + strand, within LRK53_RS18605 at 103.464 kb on + strand, within LRK53_RS18605 at 103.464 kb on + strand, within LRK53_RS18605 at 103.464 kb on + strand, within LRK53_RS18605 at 103.464 kb on + strand, within LRK53_RS18605 at 103.464 kb on + strand, within LRK53_RS18605 at 103.464 kb on + strand, within LRK53_RS18605 at 103.465 kb on - strand, within LRK53_RS18605 at 103.465 kb on - strand, within LRK53_RS18605 at 103.465 kb on - strand, within LRK53_RS18605 at 103.465 kb on - strand, within LRK53_RS18605 at 103.465 kb on - strand, within LRK53_RS18605 at 103.534 kb on + strand, within LRK53_RS18605 at 103.534 kb on + strand, within LRK53_RS18605 at 103.534 kb on + strand, within LRK53_RS18605 at 103.534 kb on + strand, within LRK53_RS18605 at 103.534 kb on + strand, within LRK53_RS18605 at 103.534 kb on + strand, within LRK53_RS18605 at 103.534 kb on + strand, within LRK53_RS18605 at 103.534 kb on + strand, within LRK53_RS18605 at 103.535 kb on - strand, within LRK53_RS18605 at 103.535 kb on - strand, within LRK53_RS18605 at 103.535 kb on - strand, within LRK53_RS18605 at 103.535 kb on - strand, within LRK53_RS18605 at 103.535 kb on - strand, within LRK53_RS18605 at 103.535 kb on - strand, within LRK53_RS18605 at 103.535 kb on - strand, within LRK53_RS18605 at 103.535 kb on - strand, within LRK53_RS18605 at 103.535 kb on - strand, within LRK53_RS18605 at 103.535 kb on - strand, within LRK53_RS18605 at 103.535 kb on - strand, within LRK53_RS18605 at 103.540 kb on + strand, within LRK53_RS18605 at 103.540 kb on + strand, within LRK53_RS18605 at 103.540 kb on + strand, within LRK53_RS18605 at 103.540 kb on + strand, within LRK53_RS18605 at 103.540 kb on + strand, within LRK53_RS18605 at 103.540 kb on + strand, within LRK53_RS18605 at 103.541 kb on - strand, within LRK53_RS18605 at 103.541 kb on - strand, within LRK53_RS18605 at 103.541 kb on - strand, within LRK53_RS18605 at 103.541 kb on - strand, within LRK53_RS18605 at 103.541 kb on - strand, within LRK53_RS18605 at 103.541 kb on - strand, within LRK53_RS18605 at 103.541 kb on - strand, within LRK53_RS18605 at 103.541 kb on - strand, within LRK53_RS18605 at 103.541 kb on - strand, within LRK53_RS18605 at 103.568 kb on + strand, within LRK53_RS18605 at 103.568 kb on + strand, within LRK53_RS18605 at 103.568 kb on + strand, within LRK53_RS18605 at 103.568 kb on + strand, within LRK53_RS18605 at 103.568 kb on + strand, within LRK53_RS18605 at 103.745 kb on + strand at 103.745 kb on + strand at 103.791 kb on + strand at 103.792 kb on - strand at 103.888 kb on + strand, within LRK53_RS18610 at 103.889 kb on - strand, within LRK53_RS18610 at 103.889 kb on - strand, within LRK53_RS18610 at 103.889 kb on - strand, within LRK53_RS18610 at 104.021 kb on + strand, within LRK53_RS18610 at 104.022 kb on - strand, within LRK53_RS18610 at 104.022 kb on - strand, within LRK53_RS18610 at 104.129 kb on + strand, within LRK53_RS18610 at 104.130 kb on - strand, within LRK53_RS18610 at 104.130 kb on - strand, within LRK53_RS18610 at 104.322 kb on + strand, within LRK53_RS18610 at 104.366 kb on + strand at 104.398 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Aluminum chloride 1mM remove 101,534 + LRK53_RS18600 0.25 -0.9 101,534 + LRK53_RS18600 0.25 -0.4 101,535 - LRK53_RS18600 0.25 -0.1 101,572 + LRK53_RS18600 0.28 +0.6 101,572 + LRK53_RS18600 0.28 +0.1 101,696 + LRK53_RS18600 0.38 +0.6 101,697 - LRK53_RS18600 0.38 -2.4 101,703 - LRK53_RS18600 0.39 -0.6 101,721 + LRK53_RS18600 0.40 +0.5 101,722 - LRK53_RS18600 0.40 -0.7 101,722 - LRK53_RS18600 0.40 -0.4 101,722 - LRK53_RS18600 0.40 -0.9 101,722 - LRK53_RS18600 0.40 -0.9 101,722 - LRK53_RS18600 0.40 -2.0 101,722 - LRK53_RS18600 0.40 -0.6 101,995 + LRK53_RS18600 0.64 -1.7 101,995 + LRK53_RS18600 0.64 -0.9 101,995 + LRK53_RS18600 0.64 +1.4 102,019 + LRK53_RS18600 0.66 -0.8 102,019 + LRK53_RS18600 0.66 -0.1 102,019 + LRK53_RS18600 0.66 +0.9 102,020 - LRK53_RS18600 0.66 -1.4 102,181 + LRK53_RS18600 0.79 +0.3 102,181 + LRK53_RS18600 0.79 +0.7 102,182 - LRK53_RS18600 0.79 -0.8 102,456 + +0.4 102,458 + -0.2 102,458 + +0.1 102,458 + -1.8 102,458 + +0.3 102,458 + -0.6 102,459 - -0.2 102,459 - -0.6 102,478 + -0.7 102,479 - -2.2 102,479 - +2.2 102,479 - -0.9 102,718 - LRK53_RS18605 0.17 -0.9 102,718 - LRK53_RS18605 0.17 -1.4 102,760 - LRK53_RS18605 0.21 -0.6 102,760 - LRK53_RS18605 0.21 -1.1 102,953 + LRK53_RS18605 0.37 -0.5 102,954 - LRK53_RS18605 0.37 -0.7 103,023 + LRK53_RS18605 0.42 -1.4 103,024 - LRK53_RS18605 0.43 +1.4 103,024 - LRK53_RS18605 0.43 -0.8 103,024 - LRK53_RS18605 0.43 +0.8 103,319 + LRK53_RS18605 0.67 +0.0 103,319 + LRK53_RS18605 0.67 -0.2 103,319 + LRK53_RS18605 0.67 -1.6 103,319 + LRK53_RS18605 0.67 -1.2 103,320 - LRK53_RS18605 0.67 +1.2 103,320 - LRK53_RS18605 0.67 -1.9 103,320 - LRK53_RS18605 0.67 +0.0 103,320 - LRK53_RS18605 0.67 -1.2 103,323 + LRK53_RS18605 0.67 -0.9 103,323 + LRK53_RS18605 0.67 -1.4 103,323 + LRK53_RS18605 0.67 -0.1 103,324 - LRK53_RS18605 0.67 +0.2 103,399 + LRK53_RS18605 0.74 -0.3 103,399 + LRK53_RS18605 0.74 -0.6 103,399 + LRK53_RS18605 0.74 -1.5 103,399 + LRK53_RS18605 0.74 +1.2 103,400 - LRK53_RS18605 0.74 -0.5 103,400 - LRK53_RS18605 0.74 -1.4 103,400 - LRK53_RS18605 0.74 -1.5 103,435 + LRK53_RS18605 0.77 -0.9 103,435 + LRK53_RS18605 0.77 +0.2 103,435 + LRK53_RS18605 0.77 +0.2 103,435 + LRK53_RS18605 0.77 -0.8 103,435 + LRK53_RS18605 0.77 -1.2 103,435 + LRK53_RS18605 0.77 -1.1 103,435 + LRK53_RS18605 0.77 -0.8 103,435 + LRK53_RS18605 0.77 -0.7 103,436 - LRK53_RS18605 0.77 -0.4 103,436 - LRK53_RS18605 0.77 -0.8 103,436 - LRK53_RS18605 0.77 -1.3 103,436 - LRK53_RS18605 0.77 -1.4 103,436 - LRK53_RS18605 0.77 -1.5 103,436 - LRK53_RS18605 0.77 -0.4 103,436 - LRK53_RS18605 0.77 -0.8 103,436 - LRK53_RS18605 0.77 -1.5 103,436 - LRK53_RS18605 0.77 +1.2 103,464 + LRK53_RS18605 0.79 +0.2 103,464 + LRK53_RS18605 0.79 -0.9 103,464 + LRK53_RS18605 0.79 +1.5 103,464 + LRK53_RS18605 0.79 -0.6 103,464 + LRK53_RS18605 0.79 -2.5 103,464 + LRK53_RS18605 0.79 -1.6 103,464 + LRK53_RS18605 0.79 +0.8 103,464 + LRK53_RS18605 0.79 -0.9 103,465 - LRK53_RS18605 0.79 -2.2 103,465 - LRK53_RS18605 0.79 -1.1 103,465 - LRK53_RS18605 0.79 -1.1 103,465 - LRK53_RS18605 0.79 -0.1 103,465 - LRK53_RS18605 0.79 -1.4 103,534 + LRK53_RS18605 0.85 -1.4 103,534 + LRK53_RS18605 0.85 -1.7 103,534 + LRK53_RS18605 0.85 -0.6 103,534 + LRK53_RS18605 0.85 +0.5 103,534 + LRK53_RS18605 0.85 -0.5 103,534 + LRK53_RS18605 0.85 -1.4 103,534 + LRK53_RS18605 0.85 -0.6 103,534 + LRK53_RS18605 0.85 -0.6 103,535 - LRK53_RS18605 0.85 -0.8 103,535 - LRK53_RS18605 0.85 +0.6 103,535 - LRK53_RS18605 0.85 -1.6 103,535 - LRK53_RS18605 0.85 +0.6 103,535 - LRK53_RS18605 0.85 +0.2 103,535 - LRK53_RS18605 0.85 -0.4 103,535 - LRK53_RS18605 0.85 -0.8 103,535 - LRK53_RS18605 0.85 -2.7 103,535 - LRK53_RS18605 0.85 +0.2 103,535 - LRK53_RS18605 0.85 -0.9 103,535 - LRK53_RS18605 0.85 +1.2 103,540 + LRK53_RS18605 0.85 +0.6 103,540 + LRK53_RS18605 0.85 +0.4 103,540 + LRK53_RS18605 0.85 -1.4 103,540 + LRK53_RS18605 0.85 -0.5 103,540 + LRK53_RS18605 0.85 -0.6 103,540 + LRK53_RS18605 0.85 -0.5 103,541 - LRK53_RS18605 0.85 -1.9 103,541 - LRK53_RS18605 0.85 -1.1 103,541 - LRK53_RS18605 0.85 -0.8 103,541 - LRK53_RS18605 0.85 -1.4 103,541 - LRK53_RS18605 0.85 -1.2 103,541 - LRK53_RS18605 0.85 -0.4 103,541 - LRK53_RS18605 0.85 -0.6 103,541 - LRK53_RS18605 0.85 -0.6 103,541 - LRK53_RS18605 0.85 -1.3 103,568 + LRK53_RS18605 0.88 -0.7 103,568 + LRK53_RS18605 0.88 -0.8 103,568 + LRK53_RS18605 0.88 -0.2 103,568 + LRK53_RS18605 0.88 +0.2 103,568 + LRK53_RS18605 0.88 -0.4 103,745 + +0.6 103,745 + +1.2 103,791 + +0.3 103,792 - -2.7 103,888 + LRK53_RS18610 0.21 -0.7 103,889 - LRK53_RS18610 0.21 -1.2 103,889 - LRK53_RS18610 0.21 -0.3 103,889 - LRK53_RS18610 0.21 -2.5 104,021 + LRK53_RS18610 0.41 +1.6 104,022 - LRK53_RS18610 0.41 -1.5 104,022 - LRK53_RS18610 0.41 -0.6 104,129 + LRK53_RS18610 0.57 -2.2 104,130 - LRK53_RS18610 0.57 -1.0 104,130 - LRK53_RS18610 0.57 +0.3 104,322 + LRK53_RS18610 0.85 -1.2 104,366 + +1.0 104,398 - -0.3
Or see this region's nucleotide sequence