Experiment: planktonic; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18385 and LRK53_RS18390 are separated by 84 nucleotides LRK53_RS18390 and LRK53_RS18395 are separated by 135 nucleotides LRK53_RS18395 and LRK53_RS18400 overlap by 56 nucleotides LRK53_RS18400 and LRK53_RS18405 are separated by 222 nucleotides
LRK53_RS18385: LRK53_RS18385 - hypothetical protein, at 52,528 to 52,815
_RS18385
LRK53_RS18390: LRK53_RS18390 - hypothetical protein, at 52,900 to 53,448
_RS18390
LRK53_RS18395: LRK53_RS18395 - DUF6338 family protein, at 53,584 to 54,345
_RS18395
LRK53_RS18400: LRK53_RS18400 - hypothetical protein, at 54,290 to 54,532
_RS18400
LRK53_RS18405: LRK53_RS18405 - ATP-dependent helicase, at 54,755 to 57,094
_RS18405
Position (kb) 53
54
55 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 52.584 kb on + strand, within LRK53_RS18385 at 52.584 kb on + strand, within LRK53_RS18385 at 52.584 kb on + strand, within LRK53_RS18385 at 52.584 kb on + strand, within LRK53_RS18385 at 52.584 kb on + strand, within LRK53_RS18385 at 52.584 kb on + strand, within LRK53_RS18385 at 52.584 kb on + strand, within LRK53_RS18385 at 52.585 kb on - strand, within LRK53_RS18385 at 52.585 kb on - strand, within LRK53_RS18385 at 52.585 kb on - strand, within LRK53_RS18385 at 52.585 kb on - strand, within LRK53_RS18385 at 52.585 kb on - strand, within LRK53_RS18385 at 52.585 kb on - strand, within LRK53_RS18385 at 52.585 kb on - strand, within LRK53_RS18385 at 52.585 kb on - strand, within LRK53_RS18385 at 52.627 kb on + strand, within LRK53_RS18385 at 52.627 kb on + strand, within LRK53_RS18385 at 52.627 kb on + strand, within LRK53_RS18385 at 52.627 kb on + strand, within LRK53_RS18385 at 52.813 kb on + strand at 52.814 kb on - strand at 52.840 kb on - strand at 52.853 kb on + strand at 52.895 kb on + strand at 52.895 kb on + strand at 52.895 kb on + strand at 52.896 kb on - strand at 52.896 kb on - strand at 52.896 kb on - strand at 52.896 kb on - strand at 52.896 kb on - strand at 52.896 kb on - strand at 53.158 kb on + strand, within LRK53_RS18390 at 53.320 kb on + strand, within LRK53_RS18390 at 53.320 kb on + strand, within LRK53_RS18390 at 53.321 kb on - strand, within LRK53_RS18390 at 53.644 kb on + strand at 53.644 kb on + strand at 53.644 kb on + strand at 53.644 kb on + strand at 53.763 kb on - strand, within LRK53_RS18395 at 53.859 kb on + strand, within LRK53_RS18395 at 53.859 kb on + strand, within LRK53_RS18395 at 53.860 kb on - strand, within LRK53_RS18395 at 53.860 kb on - strand, within LRK53_RS18395 at 54.184 kb on + strand, within LRK53_RS18395 at 54.235 kb on - strand, within LRK53_RS18395 at 54.284 kb on + strand at 54.284 kb on + strand at 54.284 kb on + strand at 54.285 kb on - strand at 54.285 kb on - strand at 54.285 kb on - strand at 54.285 kb on - strand at 54.442 kb on + strand, within LRK53_RS18400 at 54.442 kb on + strand, within LRK53_RS18400 at 54.443 kb on - strand, within LRK53_RS18400 at 54.443 kb on - strand, within LRK53_RS18400 at 54.443 kb on - strand, within LRK53_RS18400 at 54.443 kb on - strand, within LRK53_RS18400 at 54.480 kb on - strand, within LRK53_RS18400 at 54.530 kb on + strand at 54.530 kb on + strand at 54.530 kb on + strand at 54.530 kb on + strand at 54.531 kb on - strand at 54.531 kb on - strand at 54.531 kb on - strand at 54.531 kb on - strand at 54.719 kb on + strand at 54.719 kb on + strand at 54.719 kb on + strand at 54.720 kb on - strand at 54.720 kb on - strand at 54.720 kb on - strand at 54.720 kb on - strand at 54.720 kb on - strand at 54.720 kb on - strand at 54.720 kb on - strand at 54.891 kb on + strand at 55.178 kb on + strand, within LRK53_RS18405 at 55.178 kb on + strand, within LRK53_RS18405 at 55.178 kb on + strand, within LRK53_RS18405 at 55.179 kb on - strand, within LRK53_RS18405 at 55.299 kb on + strand, within LRK53_RS18405 at 55.299 kb on + strand, within LRK53_RS18405 at 55.299 kb on + strand, within LRK53_RS18405 at 55.300 kb on - strand, within LRK53_RS18405 at 55.300 kb on - strand, within LRK53_RS18405 at 55.300 kb on - strand, within LRK53_RS18405 at 55.334 kb on + strand, within LRK53_RS18405 at 55.335 kb on - strand, within LRK53_RS18405 at 55.335 kb on - strand, within LRK53_RS18405
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Aluminum chloride 1mM remove 52,584 + LRK53_RS18385 0.19 -1.5 52,584 + LRK53_RS18385 0.19 -0.4 52,584 + LRK53_RS18385 0.19 -2.0 52,584 + LRK53_RS18385 0.19 -0.8 52,584 + LRK53_RS18385 0.19 -1.2 52,584 + LRK53_RS18385 0.19 -0.4 52,584 + LRK53_RS18385 0.19 -1.1 52,585 - LRK53_RS18385 0.20 +0.6 52,585 - LRK53_RS18385 0.20 -2.6 52,585 - LRK53_RS18385 0.20 -0.8 52,585 - LRK53_RS18385 0.20 -1.9 52,585 - LRK53_RS18385 0.20 -2.1 52,585 - LRK53_RS18385 0.20 -0.8 52,585 - LRK53_RS18385 0.20 +0.6 52,585 - LRK53_RS18385 0.20 -0.2 52,627 + LRK53_RS18385 0.34 -0.9 52,627 + LRK53_RS18385 0.34 -3.0 52,627 + LRK53_RS18385 0.34 -0.8 52,627 + LRK53_RS18385 0.34 +0.2 52,813 + -0.1 52,814 - -0.6 52,840 - -1.1 52,853 + -0.4 52,895 + -0.9 52,895 + +0.8 52,895 + +0.4 52,896 - -2.9 52,896 - +0.3 52,896 - -1.5 52,896 - -1.9 52,896 - -0.6 52,896 - -0.4 53,158 + LRK53_RS18390 0.47 +1.2 53,320 + LRK53_RS18390 0.77 -0.6 53,320 + LRK53_RS18390 0.77 -1.7 53,321 - LRK53_RS18390 0.77 -1.6 53,644 + -1.1 53,644 + +0.6 53,644 + -1.1 53,644 + +0.8 53,763 - LRK53_RS18395 0.23 -1.2 53,859 + LRK53_RS18395 0.36 -1.9 53,859 + LRK53_RS18395 0.36 -0.6 53,860 - LRK53_RS18395 0.36 -1.5 53,860 - LRK53_RS18395 0.36 +1.1 54,184 + LRK53_RS18395 0.79 -0.6 54,235 - LRK53_RS18395 0.85 -1.5 54,284 + -1.5 54,284 + -1.6 54,284 + -3.0 54,285 - -2.2 54,285 - +0.3 54,285 - +1.0 54,285 - +1.3 54,442 + LRK53_RS18400 0.63 -1.9 54,442 + LRK53_RS18400 0.63 -1.2 54,443 - LRK53_RS18400 0.63 -0.6 54,443 - LRK53_RS18400 0.63 -1.1 54,443 - LRK53_RS18400 0.63 +1.7 54,443 - LRK53_RS18400 0.63 -0.8 54,480 - LRK53_RS18400 0.78 -0.2 54,530 + +0.5 54,530 + -0.4 54,530 + -1.2 54,530 + -0.6 54,531 - +0.5 54,531 - -2.7 54,531 - -0.8 54,531 - +0.4 54,719 + -1.1 54,719 + -2.5 54,719 + -1.5 54,720 - -0.8 54,720 - -0.4 54,720 - -0.4 54,720 - -0.4 54,720 - -1.2 54,720 - -0.3 54,720 - -2.0 54,891 + -0.8 55,178 + LRK53_RS18405 0.18 +1.6 55,178 + LRK53_RS18405 0.18 -1.1 55,178 + LRK53_RS18405 0.18 -1.2 55,179 - LRK53_RS18405 0.18 -0.6 55,299 + LRK53_RS18405 0.23 +0.2 55,299 + LRK53_RS18405 0.23 -0.1 55,299 + LRK53_RS18405 0.23 -1.5 55,300 - LRK53_RS18405 0.23 -1.2 55,300 - LRK53_RS18405 0.23 -1.2 55,300 - LRK53_RS18405 0.23 +0.3 55,334 + LRK53_RS18405 0.25 -1.9 55,335 - LRK53_RS18405 0.25 +0.6 55,335 - LRK53_RS18405 0.25 -1.8
Or see this region's nucleotide sequence