Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18385

Experiment: planktonic; Day1; NLDM; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS18380 and LRK53_RS18385 are separated by 2 nucleotidesLRK53_RS18385 and LRK53_RS18390 are separated by 84 nucleotidesLRK53_RS18390 and LRK53_RS18395 are separated by 135 nucleotides LRK53_RS18380: LRK53_RS18380 - toprim domain-containing protein, at 51,263 to 52,525 _RS18380 LRK53_RS18385: LRK53_RS18385 - hypothetical protein, at 52,528 to 52,815 _RS18385 LRK53_RS18390: LRK53_RS18390 - hypothetical protein, at 52,900 to 53,448 _RS18390 LRK53_RS18395: LRK53_RS18395 - DUF6338 family protein, at 53,584 to 54,345 _RS18395 Position (kb) 52 53Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 51.893 kb on + strand, within LRK53_RS18380at 51.894 kb on - strand, within LRK53_RS18380at 51.902 kb on + strand, within LRK53_RS18380at 51.903 kb on - strand, within LRK53_RS18380at 51.903 kb on - strand, within LRK53_RS18380at 51.992 kb on + strand, within LRK53_RS18380at 51.992 kb on + strand, within LRK53_RS18380at 51.992 kb on + strand, within LRK53_RS18380at 51.992 kb on + strand, within LRK53_RS18380at 51.992 kb on + strand, within LRK53_RS18380at 51.992 kb on + strand, within LRK53_RS18380at 51.992 kb on + strand, within LRK53_RS18380at 51.992 kb on + strand, within LRK53_RS18380at 51.993 kb on - strand, within LRK53_RS18380at 51.993 kb on - strand, within LRK53_RS18380at 51.993 kb on - strand, within LRK53_RS18380at 51.993 kb on - strand, within LRK53_RS18380at 51.993 kb on - strand, within LRK53_RS18380at 51.993 kb on - strand, within LRK53_RS18380at 51.993 kb on - strand, within LRK53_RS18380at 51.993 kb on - strand, within LRK53_RS18380at 51.993 kb on - strand, within LRK53_RS18380at 52.102 kb on + strand, within LRK53_RS18380at 52.102 kb on + strand, within LRK53_RS18380at 52.103 kb on - strand, within LRK53_RS18380at 52.103 kb on - strand, within LRK53_RS18380at 52.103 kb on - strand, within LRK53_RS18380at 52.299 kb on - strand, within LRK53_RS18380at 52.459 kb on + strandat 52.459 kb on + strandat 52.460 kb on - strandat 52.460 kb on - strandat 52.460 kb on - strandat 52.523 kb on + strandat 52.523 kb on + strandat 52.523 kb on + strandat 52.524 kb on - strandat 52.524 kb on - strandat 52.524 kb on - strandat 52.554 kb on + strandat 52.584 kb on + strand, within LRK53_RS18385at 52.584 kb on + strand, within LRK53_RS18385at 52.584 kb on + strand, within LRK53_RS18385at 52.584 kb on + strand, within LRK53_RS18385at 52.584 kb on + strand, within LRK53_RS18385at 52.584 kb on + strand, within LRK53_RS18385at 52.584 kb on + strand, within LRK53_RS18385at 52.585 kb on - strand, within LRK53_RS18385at 52.585 kb on - strand, within LRK53_RS18385at 52.585 kb on - strand, within LRK53_RS18385at 52.585 kb on - strand, within LRK53_RS18385at 52.585 kb on - strand, within LRK53_RS18385at 52.585 kb on - strand, within LRK53_RS18385at 52.585 kb on - strand, within LRK53_RS18385at 52.585 kb on - strand, within LRK53_RS18385at 52.627 kb on + strand, within LRK53_RS18385at 52.627 kb on + strand, within LRK53_RS18385at 52.627 kb on + strand, within LRK53_RS18385at 52.627 kb on + strand, within LRK53_RS18385at 52.813 kb on + strandat 52.814 kb on - strandat 52.840 kb on - strandat 52.853 kb on + strandat 52.895 kb on + strandat 52.895 kb on + strandat 52.895 kb on + strandat 52.896 kb on - strandat 52.896 kb on - strandat 52.896 kb on - strandat 52.896 kb on - strandat 52.896 kb on - strandat 52.896 kb on - strandat 53.158 kb on + strand, within LRK53_RS18390at 53.320 kb on + strand, within LRK53_RS18390at 53.320 kb on + strand, within LRK53_RS18390at 53.321 kb on - strand, within LRK53_RS18390at 53.644 kb on + strandat 53.644 kb on + strandat 53.644 kb on + strandat 53.644 kb on + strandat 53.763 kb on - strand, within LRK53_RS18395

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Aluminum chloride 1mM
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51,893 + LRK53_RS18380 0.50 +0.2
51,894 - LRK53_RS18380 0.50 +0.8
51,902 + LRK53_RS18380 0.51 -1.8
51,903 - LRK53_RS18380 0.51 -1.2
51,903 - LRK53_RS18380 0.51 -1.1
51,992 + LRK53_RS18380 0.58 -0.8
51,992 + LRK53_RS18380 0.58 +0.9
51,992 + LRK53_RS18380 0.58 -1.1
51,992 + LRK53_RS18380 0.58 +0.2
51,992 + LRK53_RS18380 0.58 -1.1
51,992 + LRK53_RS18380 0.58 -1.2
51,992 + LRK53_RS18380 0.58 +0.5
51,992 + LRK53_RS18380 0.58 -2.5
51,993 - LRK53_RS18380 0.58 -0.9
51,993 - LRK53_RS18380 0.58 -1.3
51,993 - LRK53_RS18380 0.58 -1.2
51,993 - LRK53_RS18380 0.58 -1.2
51,993 - LRK53_RS18380 0.58 -1.3
51,993 - LRK53_RS18380 0.58 -1.0
51,993 - LRK53_RS18380 0.58 +0.6
51,993 - LRK53_RS18380 0.58 -0.1
51,993 - LRK53_RS18380 0.58 +0.4
52,102 + LRK53_RS18380 0.66 -1.2
52,102 + LRK53_RS18380 0.66 -0.5
52,103 - LRK53_RS18380 0.67 -1.2
52,103 - LRK53_RS18380 0.67 -1.2
52,103 - LRK53_RS18380 0.67 -0.9
52,299 - LRK53_RS18380 0.82 +0.1
52,459 + -0.6
52,459 + -0.5
52,460 - +0.1
52,460 - -1.2
52,460 - -0.6
52,523 + +3.0
52,523 + +0.8
52,523 + +0.1
52,524 - -2.1
52,524 - -0.8
52,524 - +0.1
52,554 + -0.8
52,584 + LRK53_RS18385 0.19 -1.5
52,584 + LRK53_RS18385 0.19 -0.4
52,584 + LRK53_RS18385 0.19 -2.0
52,584 + LRK53_RS18385 0.19 -0.8
52,584 + LRK53_RS18385 0.19 -1.2
52,584 + LRK53_RS18385 0.19 -0.4
52,584 + LRK53_RS18385 0.19 -1.1
52,585 - LRK53_RS18385 0.20 +0.6
52,585 - LRK53_RS18385 0.20 -2.6
52,585 - LRK53_RS18385 0.20 -0.8
52,585 - LRK53_RS18385 0.20 -1.9
52,585 - LRK53_RS18385 0.20 -2.1
52,585 - LRK53_RS18385 0.20 -0.8
52,585 - LRK53_RS18385 0.20 +0.6
52,585 - LRK53_RS18385 0.20 -0.2
52,627 + LRK53_RS18385 0.34 -0.9
52,627 + LRK53_RS18385 0.34 -3.0
52,627 + LRK53_RS18385 0.34 -0.8
52,627 + LRK53_RS18385 0.34 +0.2
52,813 + -0.1
52,814 - -0.6
52,840 - -1.1
52,853 + -0.4
52,895 + -0.9
52,895 + +0.8
52,895 + +0.4
52,896 - -2.9
52,896 - +0.3
52,896 - -1.5
52,896 - -1.9
52,896 - -0.6
52,896 - -0.4
53,158 + LRK53_RS18390 0.47 +1.2
53,320 + LRK53_RS18390 0.77 -0.6
53,320 + LRK53_RS18390 0.77 -1.7
53,321 - LRK53_RS18390 0.77 -1.6
53,644 + -1.1
53,644 + +0.6
53,644 + -1.1
53,644 + +0.8
53,763 - LRK53_RS18395 0.23 -1.2

Or see this region's nucleotide sequence