Experiment: planktonic; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18195 and LRK53_RS18200 overlap by 20 nucleotides LRK53_RS18200 and LRK53_RS18205 overlap by 4 nucleotides LRK53_RS18205 and LRK53_RS18210 overlap by 1 nucleotides
LRK53_RS18195: LRK53_RS18195 - hypothetical protein, at 15,523 to 16,842
_RS18195
LRK53_RS18200: LRK53_RS18200 - PRTRC system protein B, at 16,823 to 17,578
_RS18200
LRK53_RS18205: LRK53_RS18205 - PRTRC system protein A, at 17,575 to 18,195
_RS18205
LRK53_RS18210: LRK53_RS18210 - PRTRC system ThiF family protein, at 18,195 to 19,004
_RS18210
Position (kb) 17
18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 16.600 kb on + strand, within LRK53_RS18195 at 16.600 kb on + strand, within LRK53_RS18195 at 16.600 kb on + strand, within LRK53_RS18195 at 16.600 kb on + strand, within LRK53_RS18195 at 16.601 kb on - strand, within LRK53_RS18195 at 16.666 kb on + strand, within LRK53_RS18195 at 16.666 kb on + strand, within LRK53_RS18195 at 16.666 kb on + strand, within LRK53_RS18195 at 16.666 kb on + strand, within LRK53_RS18195 at 16.666 kb on + strand, within LRK53_RS18195 at 16.666 kb on + strand, within LRK53_RS18195 at 16.667 kb on - strand, within LRK53_RS18195 at 16.667 kb on - strand, within LRK53_RS18195 at 16.667 kb on - strand, within LRK53_RS18195 at 16.667 kb on - strand, within LRK53_RS18195 at 16.667 kb on - strand, within LRK53_RS18195 at 16.667 kb on - strand, within LRK53_RS18195 at 16.667 kb on - strand, within LRK53_RS18195 at 16.667 kb on - strand, within LRK53_RS18195 at 16.770 kb on + strand at 16.770 kb on + strand at 16.770 kb on + strand at 16.770 kb on + strand at 16.770 kb on + strand at 16.771 kb on - strand at 16.771 kb on - strand at 16.771 kb on - strand at 16.771 kb on - strand at 16.771 kb on - strand at 16.804 kb on + strand at 16.804 kb on + strand at 16.804 kb on + strand at 16.804 kb on + strand at 16.804 kb on + strand at 16.805 kb on - strand at 16.805 kb on - strand at 16.805 kb on - strand at 16.816 kb on + strand at 16.816 kb on + strand at 16.816 kb on + strand at 16.817 kb on - strand at 16.881 kb on + strand at 16.882 kb on - strand at 16.882 kb on - strand at 16.882 kb on - strand at 16.882 kb on - strand at 17.208 kb on + strand, within LRK53_RS18200 at 17.208 kb on + strand, within LRK53_RS18200 at 17.208 kb on + strand, within LRK53_RS18200 at 17.208 kb on + strand, within LRK53_RS18200 at 17.208 kb on + strand, within LRK53_RS18200 at 17.208 kb on + strand, within LRK53_RS18200 at 17.208 kb on + strand, within LRK53_RS18200 at 17.208 kb on + strand, within LRK53_RS18200 at 17.208 kb on + strand, within LRK53_RS18200 at 17.208 kb on + strand, within LRK53_RS18200 at 17.208 kb on + strand, within LRK53_RS18200 at 17.208 kb on + strand, within LRK53_RS18200 at 17.208 kb on + strand, within LRK53_RS18200 at 17.208 kb on + strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.209 kb on - strand, within LRK53_RS18200 at 17.306 kb on + strand, within LRK53_RS18200 at 17.306 kb on + strand, within LRK53_RS18200 at 17.514 kb on - strand at 17.707 kb on + strand, within LRK53_RS18205 at 17.707 kb on + strand, within LRK53_RS18205 at 17.707 kb on + strand, within LRK53_RS18205 at 17.707 kb on + strand, within LRK53_RS18205 at 17.707 kb on + strand, within LRK53_RS18205 at 17.708 kb on - strand, within LRK53_RS18205 at 17.708 kb on - strand, within LRK53_RS18205 at 17.873 kb on + strand, within LRK53_RS18205 at 17.874 kb on - strand, within LRK53_RS18205 at 18.001 kb on - strand, within LRK53_RS18205 at 18.001 kb on - strand, within LRK53_RS18205 at 18.001 kb on - strand, within LRK53_RS18205 at 18.022 kb on + strand, within LRK53_RS18205 at 18.022 kb on + strand, within LRK53_RS18205 at 18.022 kb on + strand, within LRK53_RS18205 at 18.022 kb on + strand, within LRK53_RS18205 at 18.070 kb on + strand, within LRK53_RS18205 at 18.405 kb on + strand, within LRK53_RS18210 at 18.405 kb on + strand, within LRK53_RS18210 at 18.406 kb on - strand, within LRK53_RS18210 at 18.496 kb on - strand, within LRK53_RS18210 at 18.551 kb on + strand, within LRK53_RS18210 at 18.717 kb on + strand, within LRK53_RS18210 at 18.882 kb on + strand, within LRK53_RS18210 at 18.882 kb on + strand, within LRK53_RS18210 at 18.883 kb on - strand, within LRK53_RS18210 at 18.883 kb on - strand, within LRK53_RS18210 at 18.883 kb on - strand, within LRK53_RS18210 at 18.903 kb on + strand, within LRK53_RS18210 at 18.903 kb on + strand, within LRK53_RS18210 at 18.903 kb on + strand, within LRK53_RS18210 at 18.903 kb on + strand, within LRK53_RS18210 at 18.903 kb on + strand, within LRK53_RS18210 at 18.903 kb on + strand, within LRK53_RS18210 at 18.904 kb on - strand, within LRK53_RS18210 at 18.904 kb on - strand, within LRK53_RS18210 at 18.904 kb on - strand, within LRK53_RS18210 at 18.904 kb on - strand, within LRK53_RS18210 at 18.904 kb on - strand, within LRK53_RS18210 at 18.904 kb on - strand, within LRK53_RS18210 at 18.904 kb on - strand, within LRK53_RS18210 at 18.904 kb on - strand, within LRK53_RS18210 at 18.957 kb on + strand at 18.957 kb on + strand at 18.958 kb on - strand at 19.049 kb on - strand at 19.049 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Aluminum chloride 1mM remove 16,600 + LRK53_RS18195 0.82 -0.4 16,600 + LRK53_RS18195 0.82 +1.1 16,600 + LRK53_RS18195 0.82 +0.4 16,600 + LRK53_RS18195 0.82 -2.9 16,601 - LRK53_RS18195 0.82 -1.5 16,666 + LRK53_RS18195 0.87 -0.6 16,666 + LRK53_RS18195 0.87 -1.9 16,666 + LRK53_RS18195 0.87 -1.5 16,666 + LRK53_RS18195 0.87 -1.4 16,666 + LRK53_RS18195 0.87 -0.8 16,666 + LRK53_RS18195 0.87 -0.7 16,667 - LRK53_RS18195 0.87 +0.2 16,667 - LRK53_RS18195 0.87 -1.6 16,667 - LRK53_RS18195 0.87 +0.2 16,667 - LRK53_RS18195 0.87 +0.2 16,667 - LRK53_RS18195 0.87 +1.0 16,667 - LRK53_RS18195 0.87 -1.6 16,667 - LRK53_RS18195 0.87 -2.3 16,667 - LRK53_RS18195 0.87 +0.2 16,770 + -1.4 16,770 + -1.0 16,770 + -0.4 16,770 + -1.5 16,770 + -1.0 16,771 - +0.3 16,771 - +0.9 16,771 - +0.1 16,771 - -0.6 16,771 - +0.4 16,804 + -0.5 16,804 + -0.2 16,804 + -0.8 16,804 + +0.2 16,804 + +0.7 16,805 - -2.2 16,805 - -0.2 16,805 - -0.4 16,816 + -0.6 16,816 + -1.9 16,816 + -2.4 16,817 - -1.2 16,881 + -0.8 16,882 - -1.3 16,882 - +2.8 16,882 - -0.1 16,882 - -2.2 17,208 + LRK53_RS18200 0.51 -1.4 17,208 + LRK53_RS18200 0.51 +1.6 17,208 + LRK53_RS18200 0.51 +0.6 17,208 + LRK53_RS18200 0.51 -0.6 17,208 + LRK53_RS18200 0.51 +0.6 17,208 + LRK53_RS18200 0.51 -0.2 17,208 + LRK53_RS18200 0.51 -0.1 17,208 + LRK53_RS18200 0.51 -1.2 17,208 + LRK53_RS18200 0.51 +0.2 17,208 + LRK53_RS18200 0.51 -0.9 17,208 + LRK53_RS18200 0.51 +0.1 17,208 + LRK53_RS18200 0.51 -0.1 17,208 + LRK53_RS18200 0.51 +0.5 17,208 + LRK53_RS18200 0.51 +1.1 17,209 - LRK53_RS18200 0.51 +3.2 17,209 - LRK53_RS18200 0.51 -0.8 17,209 - LRK53_RS18200 0.51 -1.4 17,209 - LRK53_RS18200 0.51 +0.4 17,209 - LRK53_RS18200 0.51 -1.6 17,209 - LRK53_RS18200 0.51 -0.7 17,209 - LRK53_RS18200 0.51 -1.0 17,209 - LRK53_RS18200 0.51 +0.1 17,209 - LRK53_RS18200 0.51 -1.2 17,209 - LRK53_RS18200 0.51 -1.4 17,209 - LRK53_RS18200 0.51 -1.6 17,209 - LRK53_RS18200 0.51 -0.7 17,209 - LRK53_RS18200 0.51 +0.5 17,209 - LRK53_RS18200 0.51 -0.1 17,209 - LRK53_RS18200 0.51 +0.0 17,209 - LRK53_RS18200 0.51 -1.6 17,209 - LRK53_RS18200 0.51 -2.2 17,209 - LRK53_RS18200 0.51 -0.9 17,209 - LRK53_RS18200 0.51 -1.7 17,306 + LRK53_RS18200 0.64 +0.6 17,306 + LRK53_RS18200 0.64 -1.6 17,514 - -1.9 17,707 + LRK53_RS18205 0.21 -0.7 17,707 + LRK53_RS18205 0.21 -0.1 17,707 + LRK53_RS18205 0.21 -0.6 17,707 + LRK53_RS18205 0.21 -0.8 17,707 + LRK53_RS18205 0.21 -0.9 17,708 - LRK53_RS18205 0.21 -1.4 17,708 - LRK53_RS18205 0.21 -0.6 17,873 + LRK53_RS18205 0.48 +1.1 17,874 - LRK53_RS18205 0.48 +1.4 18,001 - LRK53_RS18205 0.69 -0.6 18,001 - LRK53_RS18205 0.69 -1.3 18,001 - LRK53_RS18205 0.69 -1.8 18,022 + LRK53_RS18205 0.72 -0.3 18,022 + LRK53_RS18205 0.72 -3.7 18,022 + LRK53_RS18205 0.72 -0.6 18,022 + LRK53_RS18205 0.72 -1.0 18,070 + LRK53_RS18205 0.80 -2.5 18,405 + LRK53_RS18210 0.26 -0.7 18,405 + LRK53_RS18210 0.26 -1.5 18,406 - LRK53_RS18210 0.26 +0.1 18,496 - LRK53_RS18210 0.37 -0.1 18,551 + LRK53_RS18210 0.44 -0.8 18,717 + LRK53_RS18210 0.64 +1.4 18,882 + LRK53_RS18210 0.85 -0.6 18,882 + LRK53_RS18210 0.85 -1.5 18,883 - LRK53_RS18210 0.85 +0.2 18,883 - LRK53_RS18210 0.85 -0.3 18,883 - LRK53_RS18210 0.85 -2.5 18,903 + LRK53_RS18210 0.87 -1.0 18,903 + LRK53_RS18210 0.87 -0.3 18,903 + LRK53_RS18210 0.87 -2.6 18,903 + LRK53_RS18210 0.87 +0.5 18,903 + LRK53_RS18210 0.87 -0.1 18,903 + LRK53_RS18210 0.87 -0.2 18,904 - LRK53_RS18210 0.88 -0.8 18,904 - LRK53_RS18210 0.88 -1.9 18,904 - LRK53_RS18210 0.88 +1.2 18,904 - LRK53_RS18210 0.88 -0.7 18,904 - LRK53_RS18210 0.88 -0.0 18,904 - LRK53_RS18210 0.88 -1.5 18,904 - LRK53_RS18210 0.88 -0.2 18,904 - LRK53_RS18210 0.88 +2.0 18,957 + -0.7 18,957 + -1.8 18,958 - +0.4 19,049 - -1.9 19,049 - +0.5
Or see this region's nucleotide sequence