Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS14450

Experiment: planktonic; Day1; NLDM; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS14445 and LRK53_RS14450 are separated by 149 nucleotidesLRK53_RS14450 and LRK53_RS14455 are separated by 43 nucleotides LRK53_RS14445: LRK53_RS14445 - TIGR00730 family Rossman fold protein, at 3,165,808 to 3,166,662 _RS14445 LRK53_RS14450: LRK53_RS14450 - cytochrome c, at 3,166,812 to 3,167,285 _RS14450 LRK53_RS14455: LRK53_RS14455 - ATP-binding protein, at 3,167,329 to 3,168,708 _RS14455 Position (kb) 3166 3167 3168Strain fitness (log2 ratio) -2 -1 0 1 2at 3166.135 kb on + strand, within LRK53_RS14445at 3166.138 kb on + strand, within LRK53_RS14445at 3166.138 kb on + strand, within LRK53_RS14445at 3166.138 kb on + strand, within LRK53_RS14445at 3166.138 kb on + strand, within LRK53_RS14445at 3166.138 kb on + strand, within LRK53_RS14445at 3166.138 kb on + strand, within LRK53_RS14445at 3166.293 kb on + strand, within LRK53_RS14445at 3166.293 kb on + strand, within LRK53_RS14445at 3166.294 kb on - strand, within LRK53_RS14445at 3166.294 kb on - strand, within LRK53_RS14445at 3166.294 kb on - strand, within LRK53_RS14445at 3166.294 kb on - strand, within LRK53_RS14445at 3166.294 kb on - strand, within LRK53_RS14445at 3166.294 kb on - strand, within LRK53_RS14445at 3166.360 kb on + strand, within LRK53_RS14445at 3166.360 kb on + strand, within LRK53_RS14445at 3166.361 kb on - strand, within LRK53_RS14445at 3166.361 kb on - strand, within LRK53_RS14445at 3166.361 kb on - strand, within LRK53_RS14445at 3166.454 kb on + strand, within LRK53_RS14445at 3166.454 kb on + strand, within LRK53_RS14445at 3166.454 kb on + strand, within LRK53_RS14445at 3166.454 kb on + strand, within LRK53_RS14445at 3166.454 kb on + strand, within LRK53_RS14445at 3166.454 kb on + strand, within LRK53_RS14445at 3166.454 kb on + strand, within LRK53_RS14445at 3166.455 kb on - strand, within LRK53_RS14445at 3166.455 kb on - strand, within LRK53_RS14445at 3166.455 kb on - strand, within LRK53_RS14445at 3166.455 kb on - strand, within LRK53_RS14445at 3166.455 kb on - strand, within LRK53_RS14445at 3167.121 kb on + strand, within LRK53_RS14450at 3167.121 kb on + strand, within LRK53_RS14450at 3167.121 kb on + strand, within LRK53_RS14450

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Aluminum chloride 1mM
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3,166,135 + LRK53_RS14445 0.38 +1.0
3,166,138 + LRK53_RS14445 0.39 -1.2
3,166,138 + LRK53_RS14445 0.39 +0.2
3,166,138 + LRK53_RS14445 0.39 -2.7
3,166,138 + LRK53_RS14445 0.39 -0.3
3,166,138 + LRK53_RS14445 0.39 -1.5
3,166,138 + LRK53_RS14445 0.39 -1.7
3,166,293 + LRK53_RS14445 0.57 -1.2
3,166,293 + LRK53_RS14445 0.57 -2.6
3,166,294 - LRK53_RS14445 0.57 -0.1
3,166,294 - LRK53_RS14445 0.57 +0.4
3,166,294 - LRK53_RS14445 0.57 +1.8
3,166,294 - LRK53_RS14445 0.57 -1.0
3,166,294 - LRK53_RS14445 0.57 +1.0
3,166,294 - LRK53_RS14445 0.57 -0.5
3,166,360 + LRK53_RS14445 0.65 +0.1
3,166,360 + LRK53_RS14445 0.65 +0.2
3,166,361 - LRK53_RS14445 0.65 -0.8
3,166,361 - LRK53_RS14445 0.65 -0.6
3,166,361 - LRK53_RS14445 0.65 -1.0
3,166,454 + LRK53_RS14445 0.76 -0.7
3,166,454 + LRK53_RS14445 0.76 -1.4
3,166,454 + LRK53_RS14445 0.76 -0.4
3,166,454 + LRK53_RS14445 0.76 +2.0
3,166,454 + LRK53_RS14445 0.76 -0.2
3,166,454 + LRK53_RS14445 0.76 +0.4
3,166,454 + LRK53_RS14445 0.76 -2.2
3,166,455 - LRK53_RS14445 0.76 -0.4
3,166,455 - LRK53_RS14445 0.76 -0.8
3,166,455 - LRK53_RS14445 0.76 -0.8
3,166,455 - LRK53_RS14445 0.76 -1.4
3,166,455 - LRK53_RS14445 0.76 +0.0
3,167,121 + LRK53_RS14450 0.65 -2.6
3,167,121 + LRK53_RS14450 0.65 -1.0
3,167,121 + LRK53_RS14450 0.65 -0.7

Or see this region's nucleotide sequence