Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS06275

Experiment: planktonic; Day1; NLDM; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS06270 and LRK53_RS06275 are separated by 167 nucleotidesLRK53_RS06275 and LRK53_RS06280 are separated by 163 nucleotidesLRK53_RS06280 and LRK53_RS06285 are separated by 137 nucleotidesLRK53_RS06285 and LRK53_RS06290 are separated by 112 nucleotidesLRK53_RS06290 and LRK53_RS06295 are separated by 76 nucleotides LRK53_RS06270: LRK53_RS06270 - SpoIIE family protein phosphatase, at 1,435,370 to 1,437,658 _RS06270 LRK53_RS06275: LRK53_RS06275 - acyl-CoA thioesterase, at 1,437,826 to 1,438,314 _RS06275 LRK53_RS06280: LRK53_RS06280 - tRNA-Tyr, at 1,438,478 to 1,438,563 _RS06280 LRK53_RS06285: LRK53_RS06285 - tRNA-Gly, at 1,438,701 to 1,438,774 _RS06285 LRK53_RS06290: LRK53_RS06290 - tRNA-Thr, at 1,438,887 to 1,438,962 _RS06290 LRK53_RS06295: LRK53_RS06295 - elongation factor Tu, at 1,439,039 to 1,440,229 _RS06295 Position (kb) 1437 1438 1439Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1436.832 kb on + strand, within LRK53_RS06270at 1436.832 kb on + strand, within LRK53_RS06270at 1436.832 kb on + strand, within LRK53_RS06270at 1436.832 kb on + strand, within LRK53_RS06270at 1436.833 kb on - strand, within LRK53_RS06270at 1436.833 kb on - strand, within LRK53_RS06270at 1436.833 kb on - strand, within LRK53_RS06270at 1436.833 kb on - strand, within LRK53_RS06270at 1436.833 kb on - strand, within LRK53_RS06270at 1436.833 kb on - strand, within LRK53_RS06270at 1436.833 kb on - strand, within LRK53_RS06270at 1436.833 kb on - strand, within LRK53_RS06270at 1436.876 kb on - strand, within LRK53_RS06270at 1436.895 kb on + strand, within LRK53_RS06270at 1436.895 kb on + strand, within LRK53_RS06270at 1436.895 kb on + strand, within LRK53_RS06270at 1436.895 kb on + strand, within LRK53_RS06270at 1436.896 kb on - strand, within LRK53_RS06270at 1436.896 kb on - strand, within LRK53_RS06270at 1436.896 kb on - strand, within LRK53_RS06270at 1436.896 kb on - strand, within LRK53_RS06270at 1436.896 kb on - strand, within LRK53_RS06270at 1436.896 kb on - strand, within LRK53_RS06270at 1437.063 kb on + strand, within LRK53_RS06270at 1437.064 kb on - strand, within LRK53_RS06270at 1437.168 kb on - strand, within LRK53_RS06270at 1437.174 kb on + strand, within LRK53_RS06270at 1437.174 kb on + strand, within LRK53_RS06270at 1437.174 kb on + strand, within LRK53_RS06270at 1437.175 kb on - strand, within LRK53_RS06270at 1437.175 kb on - strand, within LRK53_RS06270at 1437.175 kb on - strand, within LRK53_RS06270at 1437.175 kb on - strand, within LRK53_RS06270at 1437.346 kb on - strand, within LRK53_RS06270at 1437.623 kb on + strandat 1437.623 kb on + strandat 1437.623 kb on + strandat 1437.624 kb on - strandat 1437.624 kb on - strandat 1437.650 kb on + strandat 1437.670 kb on + strandat 1437.670 kb on + strandat 1437.670 kb on + strandat 1437.670 kb on + strandat 1437.670 kb on + strandat 1437.670 kb on + strandat 1437.670 kb on + strandat 1437.670 kb on + strandat 1437.670 kb on + strandat 1437.670 kb on + strandat 1437.670 kb on + strandat 1437.671 kb on - strandat 1437.671 kb on - strandat 1437.671 kb on - strandat 1437.671 kb on - strandat 1437.671 kb on - strandat 1437.671 kb on - strandat 1437.717 kb on + strandat 1437.717 kb on + strandat 1437.718 kb on - strandat 1437.718 kb on - strandat 1437.789 kb on + strandat 1437.789 kb on + strandat 1437.789 kb on + strandat 1437.789 kb on + strandat 1437.789 kb on + strandat 1437.789 kb on + strandat 1437.789 kb on + strandat 1437.789 kb on + strandat 1437.789 kb on + strandat 1437.790 kb on - strandat 1437.790 kb on - strandat 1437.790 kb on - strandat 1437.800 kb on + strandat 1437.940 kb on + strand, within LRK53_RS06275at 1437.940 kb on + strand, within LRK53_RS06275at 1437.941 kb on - strand, within LRK53_RS06275at 1437.971 kb on - strand, within LRK53_RS06275at 1437.971 kb on - strand, within LRK53_RS06275at 1437.971 kb on - strand, within LRK53_RS06275at 1438.059 kb on + strand, within LRK53_RS06275at 1438.109 kb on + strand, within LRK53_RS06275at 1438.109 kb on + strand, within LRK53_RS06275at 1438.109 kb on + strand, within LRK53_RS06275at 1438.109 kb on + strand, within LRK53_RS06275at 1438.109 kb on + strand, within LRK53_RS06275at 1438.109 kb on + strand, within LRK53_RS06275at 1438.109 kb on + strand, within LRK53_RS06275at 1438.109 kb on + strand, within LRK53_RS06275at 1438.109 kb on + strand, within LRK53_RS06275at 1438.109 kb on + strand, within LRK53_RS06275at 1438.110 kb on - strand, within LRK53_RS06275at 1438.110 kb on - strand, within LRK53_RS06275

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Aluminum chloride 1mM
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1,436,832 + LRK53_RS06270 0.64 -0.9
1,436,832 + LRK53_RS06270 0.64 +0.7
1,436,832 + LRK53_RS06270 0.64 +2.0
1,436,832 + LRK53_RS06270 0.64 -0.6
1,436,833 - LRK53_RS06270 0.64 -1.6
1,436,833 - LRK53_RS06270 0.64 -0.6
1,436,833 - LRK53_RS06270 0.64 +1.3
1,436,833 - LRK53_RS06270 0.64 +0.1
1,436,833 - LRK53_RS06270 0.64 -0.5
1,436,833 - LRK53_RS06270 0.64 +0.6
1,436,833 - LRK53_RS06270 0.64 -0.7
1,436,833 - LRK53_RS06270 0.64 -2.4
1,436,876 - LRK53_RS06270 0.66 +0.9
1,436,895 + LRK53_RS06270 0.67 +0.4
1,436,895 + LRK53_RS06270 0.67 +1.0
1,436,895 + LRK53_RS06270 0.67 +1.0
1,436,895 + LRK53_RS06270 0.67 -0.0
1,436,896 - LRK53_RS06270 0.67 -2.3
1,436,896 - LRK53_RS06270 0.67 +0.1
1,436,896 - LRK53_RS06270 0.67 -2.3
1,436,896 - LRK53_RS06270 0.67 +1.5
1,436,896 - LRK53_RS06270 0.67 +2.9
1,436,896 - LRK53_RS06270 0.67 +0.3
1,437,063 + LRK53_RS06270 0.74 -2.0
1,437,064 - LRK53_RS06270 0.74 +0.1
1,437,168 - LRK53_RS06270 0.79 +0.8
1,437,174 + LRK53_RS06270 0.79 -0.4
1,437,174 + LRK53_RS06270 0.79 +1.7
1,437,174 + LRK53_RS06270 0.79 +0.7
1,437,175 - LRK53_RS06270 0.79 -1.7
1,437,175 - LRK53_RS06270 0.79 -0.9
1,437,175 - LRK53_RS06270 0.79 -0.7
1,437,175 - LRK53_RS06270 0.79 +0.9
1,437,346 - LRK53_RS06270 0.86 -0.3
1,437,623 + +0.1
1,437,623 + -1.2
1,437,623 + -1.7
1,437,624 - -0.7
1,437,624 - -0.7
1,437,650 + -1.2
1,437,670 + -2.3
1,437,670 + -1.4
1,437,670 + +0.5
1,437,670 + -1.0
1,437,670 + -0.7
1,437,670 + -0.2
1,437,670 + +1.4
1,437,670 + +0.1
1,437,670 + +0.4
1,437,670 + +0.8
1,437,670 + -0.2
1,437,671 - -2.5
1,437,671 - -1.0
1,437,671 - -0.0
1,437,671 - -1.0
1,437,671 - +0.1
1,437,671 - -1.1
1,437,717 + +0.6
1,437,717 + +2.1
1,437,718 - +0.1
1,437,718 - +0.7
1,437,789 + +0.1
1,437,789 + +0.6
1,437,789 + -0.9
1,437,789 + -1.0
1,437,789 + -0.6
1,437,789 + -0.9
1,437,789 + +0.5
1,437,789 + -0.1
1,437,789 + -1.3
1,437,790 - -0.3
1,437,790 - -0.3
1,437,790 - -0.6
1,437,800 + -0.9
1,437,940 + LRK53_RS06275 0.23 -0.4
1,437,940 + LRK53_RS06275 0.23 -1.9
1,437,941 - LRK53_RS06275 0.24 -2.9
1,437,971 - LRK53_RS06275 0.30 +0.6
1,437,971 - LRK53_RS06275 0.30 -2.0
1,437,971 - LRK53_RS06275 0.30 -0.2
1,438,059 + LRK53_RS06275 0.48 -0.0
1,438,109 + LRK53_RS06275 0.58 +0.9
1,438,109 + LRK53_RS06275 0.58 +0.9
1,438,109 + LRK53_RS06275 0.58 -1.0
1,438,109 + LRK53_RS06275 0.58 -1.6
1,438,109 + LRK53_RS06275 0.58 -1.9
1,438,109 + LRK53_RS06275 0.58 -0.3
1,438,109 + LRK53_RS06275 0.58 -0.9
1,438,109 + LRK53_RS06275 0.58 +1.3
1,438,109 + LRK53_RS06275 0.58 -0.4
1,438,109 + LRK53_RS06275 0.58 -1.6
1,438,110 - LRK53_RS06275 0.58 -2.1
1,438,110 - LRK53_RS06275 0.58 -0.6

Or see this region's nucleotide sequence