Experiment: planktonic; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01675 and LRK53_RS01680 are separated by 133 nucleotides LRK53_RS01680 and LRK53_RS01685 are separated by 53 nucleotides LRK53_RS01685 and LRK53_RS01690 are separated by 203 nucleotides
LRK53_RS01675: LRK53_RS01675 - mitochondrial fission ELM1 family protein, at 396,126 to 397,115
_RS01675
LRK53_RS01680: LRK53_RS01680 - malonic semialdehyde reductase, at 397,249 to 397,842
_RS01680
LRK53_RS01685: LRK53_RS01685 - YceI family protein, at 397,896 to 398,489
_RS01685
LRK53_RS01690: LRK53_RS01690 - YIP1 family protein, at 398,693 to 399,253
_RS01690
Position (kb) 397
398 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 396.584 kb on - strand, within LRK53_RS01675 at 396.824 kb on - strand, within LRK53_RS01675 at 397.033 kb on + strand at 397.033 kb on + strand at 397.033 kb on + strand at 397.156 kb on + strand at 397.156 kb on + strand at 397.156 kb on + strand at 397.156 kb on + strand at 397.156 kb on + strand at 397.156 kb on + strand at 397.156 kb on + strand at 397.156 kb on + strand at 397.156 kb on + strand at 397.156 kb on + strand at 397.156 kb on + strand at 397.156 kb on + strand at 397.156 kb on + strand at 397.156 kb on + strand at 397.156 kb on + strand at 397.156 kb on + strand at 397.156 kb on + strand at 397.156 kb on + strand at 397.156 kb on + strand at 397.156 kb on + strand at 397.156 kb on + strand at 397.157 kb on - strand at 397.157 kb on - strand at 397.157 kb on - strand at 397.157 kb on - strand at 397.157 kb on - strand at 397.157 kb on - strand at 397.157 kb on - strand at 397.157 kb on - strand at 397.157 kb on - strand at 397.157 kb on - strand at 397.157 kb on - strand at 397.157 kb on - strand at 397.157 kb on - strand at 397.157 kb on - strand at 397.157 kb on - strand at 397.157 kb on - strand at 397.157 kb on - strand at 397.157 kb on - strand at 397.157 kb on - strand at 397.157 kb on - strand at 397.157 kb on - strand at 397.157 kb on - strand at 397.157 kb on - strand at 397.157 kb on - strand at 397.157 kb on - strand at 397.157 kb on - strand at 397.157 kb on - strand at 397.157 kb on - strand at 397.157 kb on - strand at 397.196 kb on + strand at 397.196 kb on + strand at 397.197 kb on - strand at 397.197 kb on - strand at 397.197 kb on - strand at 397.197 kb on - strand at 397.197 kb on - strand at 397.197 kb on - strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.198 kb on + strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.199 kb on - strand at 397.245 kb on - strand at 397.528 kb on + strand, within LRK53_RS01680 at 397.528 kb on + strand, within LRK53_RS01680 at 397.528 kb on + strand, within LRK53_RS01680 at 397.528 kb on + strand, within LRK53_RS01680 at 397.528 kb on + strand, within LRK53_RS01680 at 397.529 kb on - strand, within LRK53_RS01680 at 397.529 kb on - strand, within LRK53_RS01680 at 397.529 kb on - strand, within LRK53_RS01680 at 397.529 kb on - strand, within LRK53_RS01680 at 397.529 kb on - strand, within LRK53_RS01680 at 397.639 kb on + strand, within LRK53_RS01680 at 397.639 kb on + strand, within LRK53_RS01680 at 397.639 kb on + strand, within LRK53_RS01680 at 397.639 kb on + strand, within LRK53_RS01680 at 397.639 kb on + strand, within LRK53_RS01680 at 397.639 kb on + strand, within LRK53_RS01680 at 397.639 kb on + strand, within LRK53_RS01680 at 397.639 kb on + strand, within LRK53_RS01680 at 397.639 kb on + strand, within LRK53_RS01680 at 397.639 kb on + strand, within LRK53_RS01680 at 397.639 kb on + strand, within LRK53_RS01680 at 397.639 kb on + strand, within LRK53_RS01680 at 397.639 kb on + strand, within LRK53_RS01680 at 397.639 kb on + strand, within LRK53_RS01680 at 397.639 kb on + strand, within LRK53_RS01680 at 397.640 kb on - strand, within LRK53_RS01680 at 397.640 kb on - strand, within LRK53_RS01680 at 397.640 kb on - strand, within LRK53_RS01680 at 397.640 kb on - strand, within LRK53_RS01680 at 397.640 kb on - strand, within LRK53_RS01680 at 397.640 kb on - strand, within LRK53_RS01680 at 397.640 kb on - strand, within LRK53_RS01680 at 397.640 kb on - strand, within LRK53_RS01680 at 397.640 kb on - strand, within LRK53_RS01680 at 397.640 kb on - strand, within LRK53_RS01680 at 397.640 kb on - strand, within LRK53_RS01680 at 397.835 kb on + strand at 397.875 kb on + strand at 397.875 kb on + strand at 397.876 kb on - strand at 397.911 kb on + strand at 397.911 kb on + strand at 397.911 kb on + strand at 397.911 kb on + strand at 397.911 kb on + strand at 397.911 kb on + strand at 397.911 kb on + strand at 397.911 kb on + strand at 397.911 kb on + strand at 397.911 kb on + strand at 397.911 kb on + strand at 397.911 kb on + strand at 397.911 kb on + strand at 397.911 kb on + strand at 397.911 kb on + strand at 397.911 kb on + strand at 397.911 kb on + strand at 397.912 kb on - strand at 397.912 kb on - strand at 397.912 kb on - strand at 397.912 kb on - strand at 397.912 kb on - strand at 397.912 kb on - strand at 397.912 kb on - strand at 397.912 kb on - strand at 397.912 kb on - strand at 397.912 kb on - strand at 397.912 kb on - strand at 397.971 kb on + strand, within LRK53_RS01685 at 397.971 kb on + strand, within LRK53_RS01685 at 397.971 kb on + strand, within LRK53_RS01685 at 397.971 kb on + strand, within LRK53_RS01685 at 397.971 kb on + strand, within LRK53_RS01685 at 397.971 kb on + strand, within LRK53_RS01685 at 397.972 kb on - strand, within LRK53_RS01685 at 397.972 kb on - strand, within LRK53_RS01685 at 397.972 kb on - strand, within LRK53_RS01685 at 397.972 kb on - strand, within LRK53_RS01685 at 397.972 kb on - strand, within LRK53_RS01685 at 397.972 kb on - strand, within LRK53_RS01685 at 397.972 kb on - strand, within LRK53_RS01685 at 397.972 kb on - strand, within LRK53_RS01685 at 397.972 kb on - strand, within LRK53_RS01685 at 397.972 kb on - strand, within LRK53_RS01685 at 397.972 kb on - strand, within LRK53_RS01685 at 398.025 kb on + strand, within LRK53_RS01685 at 398.197 kb on - strand, within LRK53_RS01685 at 398.409 kb on + strand, within LRK53_RS01685 at 398.409 kb on + strand, within LRK53_RS01685 at 398.409 kb on + strand, within LRK53_RS01685 at 398.409 kb on + strand, within LRK53_RS01685 at 398.409 kb on + strand, within LRK53_RS01685 at 398.410 kb on - strand, within LRK53_RS01685 at 398.410 kb on - strand, within LRK53_RS01685 at 398.410 kb on - strand, within LRK53_RS01685 at 398.410 kb on - strand, within LRK53_RS01685 at 398.410 kb on - strand, within LRK53_RS01685 at 398.410 kb on - strand, within LRK53_RS01685 at 398.410 kb on - strand, within LRK53_RS01685 at 398.410 kb on - strand, within LRK53_RS01685 at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.488 kb on - strand at 398.488 kb on - strand at 398.488 kb on - strand at 398.488 kb on - strand at 398.488 kb on - strand at 398.488 kb on - strand at 398.488 kb on - strand at 398.488 kb on - strand at 398.488 kb on - strand at 398.488 kb on - strand at 398.488 kb on - strand at 398.649 kb on + strand at 398.650 kb on - strand at 398.650 kb on - strand at 398.650 kb on - strand at 398.694 kb on + strand at 398.694 kb on + strand at 398.695 kb on - strand at 398.695 kb on - strand at 398.703 kb on + strand at 398.703 kb on + strand at 398.703 kb on + strand at 398.703 kb on + strand at 398.703 kb on + strand at 398.703 kb on + strand at 398.704 kb on - strand at 398.704 kb on - strand at 398.704 kb on - strand at 398.704 kb on - strand at 398.704 kb on - strand at 398.704 kb on - strand at 398.704 kb on - strand at 398.704 kb on - strand at 398.704 kb on - strand at 398.704 kb on - strand at 398.754 kb on + strand, within LRK53_RS01690 at 398.754 kb on + strand, within LRK53_RS01690 at 398.754 kb on + strand, within LRK53_RS01690 at 398.754 kb on + strand, within LRK53_RS01690 at 398.754 kb on + strand, within LRK53_RS01690 at 398.754 kb on + strand, within LRK53_RS01690 at 398.754 kb on + strand, within LRK53_RS01690 at 398.754 kb on + strand, within LRK53_RS01690 at 398.754 kb on + strand, within LRK53_RS01690 at 398.754 kb on + strand, within LRK53_RS01690 at 398.754 kb on + strand, within LRK53_RS01690 at 398.755 kb on - strand, within LRK53_RS01690 at 398.755 kb on - strand, within LRK53_RS01690 at 398.755 kb on - strand, within LRK53_RS01690 at 398.821 kb on + strand, within LRK53_RS01690 at 398.821 kb on + strand, within LRK53_RS01690 at 398.821 kb on + strand, within LRK53_RS01690 at 398.821 kb on + strand, within LRK53_RS01690 at 398.821 kb on + strand, within LRK53_RS01690 at 398.821 kb on + strand, within LRK53_RS01690 at 398.821 kb on + strand, within LRK53_RS01690 at 398.822 kb on - strand, within LRK53_RS01690 at 398.822 kb on - strand, within LRK53_RS01690 at 398.822 kb on - strand, within LRK53_RS01690 at 398.822 kb on - strand, within LRK53_RS01690 at 398.822 kb on - strand, within LRK53_RS01690 at 398.822 kb on - strand, within LRK53_RS01690
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Aluminum chloride 1mM remove 396,584 - LRK53_RS01675 0.46 -0.1 396,824 - LRK53_RS01675 0.71 -0.8 397,033 + -0.4 397,033 + -0.1 397,033 + -1.2 397,156 + +0.0 397,156 + +1.2 397,156 + -1.5 397,156 + -0.9 397,156 + +0.9 397,156 + -0.6 397,156 + +0.5 397,156 + +0.0 397,156 + +1.4 397,156 + +0.3 397,156 + -0.7 397,156 + -0.3 397,156 + -0.3 397,156 + +0.2 397,156 + +1.2 397,156 + -0.9 397,156 + -0.4 397,156 + -3.0 397,156 + -0.3 397,156 + +1.5 397,156 + -1.2 397,157 - -0.9 397,157 - +1.5 397,157 - -0.8 397,157 - +0.5 397,157 - -0.5 397,157 - -1.8 397,157 - -1.9 397,157 - -0.7 397,157 - -1.5 397,157 - -0.5 397,157 - +1.0 397,157 - -2.1 397,157 - +0.3 397,157 - -1.0 397,157 - -0.9 397,157 - -1.3 397,157 - -2.7 397,157 - -1.1 397,157 - -2.4 397,157 - -2.0 397,157 - -0.6 397,157 - -0.8 397,157 - -0.7 397,157 - -0.9 397,157 - -0.5 397,157 - +0.3 397,157 - -0.3 397,157 - -0.7 397,157 - -0.9 397,196 + -1.9 397,196 + +0.7 397,197 - -1.0 397,197 - -1.8 397,197 - -0.6 397,197 - -1.4 397,197 - +0.2 397,197 - +1.6 397,198 + -1.5 397,198 + -3.0 397,198 + -0.4 397,198 + +0.2 397,198 + +0.2 397,198 + -0.3 397,198 + +0.3 397,198 + -1.5 397,198 + +0.0 397,198 + -0.1 397,198 + -0.9 397,198 + +0.9 397,198 + -0.2 397,198 + -1.4 397,198 + +0.9 397,198 + -0.6 397,198 + -2.3 397,198 + +0.2 397,198 + -0.4 397,198 + -2.3 397,198 + -0.8 397,198 + -0.6 397,198 + -1.5 397,198 + +0.5 397,198 + -0.1 397,198 + -1.4 397,198 + -1.4 397,198 + +0.1 397,198 + -0.1 397,198 + +0.0 397,198 + -1.2 397,198 + +0.0 397,198 + +0.1 397,198 + -0.0 397,198 + -0.8 397,198 + +0.3 397,198 + +2.4 397,198 + -0.3 397,198 + +0.2 397,198 + -1.3 397,198 + +0.9 397,199 - -1.9 397,199 - -0.8 397,199 - -2.2 397,199 - -0.5 397,199 - -0.1 397,199 - +0.2 397,199 - -1.0 397,199 - +0.8 397,199 - +2.5 397,199 - -2.5 397,199 - -0.7 397,199 - -1.9 397,199 - -1.0 397,199 - +0.2 397,199 - +0.1 397,199 - -0.5 397,199 - +0.1 397,199 - +0.2 397,199 - -0.8 397,199 - -0.8 397,199 - +0.5 397,199 - -1.0 397,199 - -0.9 397,199 - -0.0 397,199 - +0.3 397,199 - +0.9 397,199 - -1.5 397,199 - +0.2 397,199 - -1.2 397,199 - -0.4 397,199 - +1.3 397,199 - -0.7 397,199 - -1.9 397,199 - +0.1 397,199 - -0.5 397,199 - -1.9 397,199 - -1.0 397,245 - +0.1 397,528 + LRK53_RS01680 0.47 -2.1 397,528 + LRK53_RS01680 0.47 -1.4 397,528 + LRK53_RS01680 0.47 +0.0 397,528 + LRK53_RS01680 0.47 -1.5 397,528 + LRK53_RS01680 0.47 +0.9 397,529 - LRK53_RS01680 0.47 +0.9 397,529 - LRK53_RS01680 0.47 +1.3 397,529 - LRK53_RS01680 0.47 +0.2 397,529 - LRK53_RS01680 0.47 -3.2 397,529 - LRK53_RS01680 0.47 -0.5 397,639 + LRK53_RS01680 0.66 -1.0 397,639 + LRK53_RS01680 0.66 -2.4 397,639 + LRK53_RS01680 0.66 -2.4 397,639 + LRK53_RS01680 0.66 -1.4 397,639 + LRK53_RS01680 0.66 -1.0 397,639 + LRK53_RS01680 0.66 -0.3 397,639 + LRK53_RS01680 0.66 -0.7 397,639 + LRK53_RS01680 0.66 -1.9 397,639 + LRK53_RS01680 0.66 -0.7 397,639 + LRK53_RS01680 0.66 -0.1 397,639 + LRK53_RS01680 0.66 -0.9 397,639 + LRK53_RS01680 0.66 -3.4 397,639 + LRK53_RS01680 0.66 +1.1 397,639 + LRK53_RS01680 0.66 -1.1 397,639 + LRK53_RS01680 0.66 +0.2 397,640 - LRK53_RS01680 0.66 -1.5 397,640 - LRK53_RS01680 0.66 -1.3 397,640 - LRK53_RS01680 0.66 -2.2 397,640 - LRK53_RS01680 0.66 -3.3 397,640 - LRK53_RS01680 0.66 -1.1 397,640 - LRK53_RS01680 0.66 -1.9 397,640 - LRK53_RS01680 0.66 +0.2 397,640 - LRK53_RS01680 0.66 -2.0 397,640 - LRK53_RS01680 0.66 -2.9 397,640 - LRK53_RS01680 0.66 +0.0 397,640 - LRK53_RS01680 0.66 -1.1 397,835 + -0.4 397,875 + -0.9 397,875 + -1.5 397,876 - -3.7 397,911 + +1.0 397,911 + -1.0 397,911 + +0.5 397,911 + -2.3 397,911 + -1.1 397,911 + -1.7 397,911 + -1.9 397,911 + -1.1 397,911 + -0.5 397,911 + +0.7 397,911 + -1.4 397,911 + -1.2 397,911 + -1.0 397,911 + -1.0 397,911 + +0.0 397,911 + -0.0 397,911 + -0.3 397,912 - -1.4 397,912 - -0.4 397,912 - -1.2 397,912 - -1.7 397,912 - +0.6 397,912 - -0.3 397,912 - +0.5 397,912 - -1.4 397,912 - -0.5 397,912 - -0.9 397,912 - -1.4 397,971 + LRK53_RS01685 0.13 +1.7 397,971 + LRK53_RS01685 0.13 -0.5 397,971 + LRK53_RS01685 0.13 +0.5 397,971 + LRK53_RS01685 0.13 -0.7 397,971 + LRK53_RS01685 0.13 -1.1 397,971 + LRK53_RS01685 0.13 -0.6 397,972 - LRK53_RS01685 0.13 +0.1 397,972 - LRK53_RS01685 0.13 -2.0 397,972 - LRK53_RS01685 0.13 -0.8 397,972 - LRK53_RS01685 0.13 +1.8 397,972 - LRK53_RS01685 0.13 -1.7 397,972 - LRK53_RS01685 0.13 -0.7 397,972 - LRK53_RS01685 0.13 +1.0 397,972 - LRK53_RS01685 0.13 -1.8 397,972 - LRK53_RS01685 0.13 -1.9 397,972 - LRK53_RS01685 0.13 +0.1 397,972 - LRK53_RS01685 0.13 -1.0 398,025 + LRK53_RS01685 0.22 -1.0 398,197 - LRK53_RS01685 0.51 -1.1 398,409 + LRK53_RS01685 0.86 -1.0 398,409 + LRK53_RS01685 0.86 -0.8 398,409 + LRK53_RS01685 0.86 +0.2 398,409 + LRK53_RS01685 0.86 -2.1 398,409 + LRK53_RS01685 0.86 -2.1 398,410 - LRK53_RS01685 0.87 +0.9 398,410 - LRK53_RS01685 0.87 +0.3 398,410 - LRK53_RS01685 0.87 -1.0 398,410 - LRK53_RS01685 0.87 -1.4 398,410 - LRK53_RS01685 0.87 +1.0 398,410 - LRK53_RS01685 0.87 +0.2 398,410 - LRK53_RS01685 0.87 -1.9 398,410 - LRK53_RS01685 0.87 -0.7 398,487 + -1.4 398,487 + -1.5 398,487 + -0.2 398,487 + -1.2 398,487 + -0.7 398,487 + +0.4 398,487 + -2.2 398,487 + -1.0 398,487 + -0.4 398,487 + +0.7 398,487 + -1.9 398,487 + -2.2 398,487 + -0.4 398,487 + +0.5 398,487 + -0.8 398,487 + +0.5 398,487 + -1.0 398,487 + -0.3 398,488 - +0.6 398,488 - -0.4 398,488 - +0.5 398,488 - -2.0 398,488 - +1.0 398,488 - +0.1 398,488 - -1.1 398,488 - -0.1 398,488 - +0.6 398,488 - -1.7 398,488 - -2.2 398,649 + +1.5 398,650 - -0.7 398,650 - +1.2 398,650 - -0.5 398,694 + +2.0 398,694 + +0.5 398,695 - +0.2 398,695 - -1.7 398,703 + +0.5 398,703 + -0.3 398,703 + -0.3 398,703 + -0.1 398,703 + -0.9 398,703 + -1.1 398,704 - -0.5 398,704 - -0.7 398,704 - -0.4 398,704 - -0.4 398,704 - -1.7 398,704 - +1.5 398,704 - -0.3 398,704 - -1.0 398,704 - -0.1 398,704 - -2.0 398,754 + LRK53_RS01690 0.11 -1.3 398,754 + LRK53_RS01690 0.11 -1.4 398,754 + LRK53_RS01690 0.11 +0.9 398,754 + LRK53_RS01690 0.11 -2.6 398,754 + LRK53_RS01690 0.11 -0.5 398,754 + LRK53_RS01690 0.11 +1.0 398,754 + LRK53_RS01690 0.11 -0.3 398,754 + LRK53_RS01690 0.11 -0.5 398,754 + LRK53_RS01690 0.11 -1.4 398,754 + LRK53_RS01690 0.11 -1.7 398,754 + LRK53_RS01690 0.11 -0.5 398,755 - LRK53_RS01690 0.11 +0.5 398,755 - LRK53_RS01690 0.11 +1.2 398,755 - LRK53_RS01690 0.11 -1.0 398,821 + LRK53_RS01690 0.23 +0.7 398,821 + LRK53_RS01690 0.23 -0.7 398,821 + LRK53_RS01690 0.23 -0.1 398,821 + LRK53_RS01690 0.23 -0.5 398,821 + LRK53_RS01690 0.23 +0.2 398,821 + LRK53_RS01690 0.23 -3.9 398,821 + LRK53_RS01690 0.23 -0.2 398,822 - LRK53_RS01690 0.23 +0.9 398,822 - LRK53_RS01690 0.23 -1.0 398,822 - LRK53_RS01690 0.23 -1.1 398,822 - LRK53_RS01690 0.23 -0.5 398,822 - LRK53_RS01690 0.23 +0.8 398,822 - LRK53_RS01690 0.23 -0.4
Or see this region's nucleotide sequence