Experiment: planktonic; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00345 and LRK53_RS00350 are separated by 488 nucleotides LRK53_RS00350 and LRK53_RS00355 are separated by 59 nucleotides
LRK53_RS00345: LRK53_RS00345 - sorbitol dehydrogenase family protein, at 80,040 to 80,567
_RS00345
LRK53_RS00350: LRK53_RS00350 - DoxX family protein, at 81,056 to 81,415
_RS00350
LRK53_RS00355: LRK53_RS00355 - cation diffusion facilitator family transporter, at 81,475 to 82,377
_RS00355
Position (kb) 81
82 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 80.069 kb on - strand at 80.069 kb on - strand at 80.078 kb on - strand at 80.083 kb on + strand at 80.083 kb on + strand at 80.083 kb on + strand at 80.083 kb on + strand at 80.083 kb on + strand at 80.083 kb on + strand at 80.083 kb on + strand at 80.083 kb on + strand at 80.083 kb on + strand at 80.084 kb on - strand at 80.084 kb on - strand at 80.084 kb on - strand at 80.084 kb on - strand at 80.084 kb on - strand at 80.084 kb on - strand at 80.084 kb on - strand at 80.084 kb on - strand at 80.084 kb on - strand at 80.084 kb on - strand at 80.084 kb on - strand at 80.084 kb on - strand at 80.344 kb on + strand, within LRK53_RS00345 at 80.344 kb on + strand, within LRK53_RS00345 at 80.344 kb on + strand, within LRK53_RS00345 at 80.344 kb on + strand, within LRK53_RS00345 at 80.345 kb on - strand, within LRK53_RS00345 at 80.345 kb on - strand, within LRK53_RS00345 at 80.345 kb on - strand, within LRK53_RS00345 at 80.345 kb on - strand, within LRK53_RS00345 at 80.473 kb on + strand, within LRK53_RS00345 at 80.473 kb on + strand, within LRK53_RS00345 at 80.473 kb on + strand, within LRK53_RS00345 at 80.474 kb on - strand, within LRK53_RS00345 at 80.621 kb on + strand at 80.621 kb on + strand at 80.621 kb on + strand at 80.622 kb on - strand at 80.622 kb on - strand at 80.676 kb on + strand at 80.676 kb on + strand at 80.676 kb on + strand at 80.677 kb on - strand at 80.701 kb on + strand at 80.701 kb on + strand at 80.701 kb on + strand at 80.701 kb on + strand at 80.702 kb on - strand at 80.763 kb on + strand at 80.763 kb on + strand at 80.763 kb on + strand at 80.764 kb on - strand at 80.764 kb on - strand at 80.764 kb on - strand at 81.101 kb on + strand, within LRK53_RS00350 at 81.101 kb on + strand, within LRK53_RS00350 at 81.101 kb on + strand, within LRK53_RS00350 at 81.101 kb on + strand, within LRK53_RS00350 at 81.101 kb on + strand, within LRK53_RS00350 at 81.102 kb on - strand, within LRK53_RS00350 at 81.102 kb on - strand, within LRK53_RS00350 at 81.119 kb on + strand, within LRK53_RS00350 at 81.119 kb on + strand, within LRK53_RS00350 at 81.119 kb on + strand, within LRK53_RS00350 at 81.120 kb on - strand, within LRK53_RS00350 at 81.120 kb on - strand, within LRK53_RS00350 at 81.120 kb on - strand, within LRK53_RS00350 at 81.120 kb on - strand, within LRK53_RS00350 at 81.120 kb on - strand, within LRK53_RS00350 at 81.255 kb on + strand, within LRK53_RS00350 at 81.255 kb on + strand, within LRK53_RS00350 at 81.256 kb on - strand, within LRK53_RS00350 at 81.256 kb on - strand, within LRK53_RS00350 at 81.277 kb on + strand, within LRK53_RS00350 at 81.277 kb on + strand, within LRK53_RS00350 at 81.278 kb on - strand, within LRK53_RS00350 at 81.278 kb on - strand, within LRK53_RS00350 at 81.278 kb on - strand, within LRK53_RS00350 at 81.278 kb on - strand, within LRK53_RS00350 at 81.656 kb on - strand, within LRK53_RS00355 at 81.656 kb on - strand, within LRK53_RS00355 at 81.769 kb on + strand, within LRK53_RS00355 at 81.770 kb on - strand, within LRK53_RS00355 at 81.836 kb on + strand, within LRK53_RS00355 at 81.836 kb on + strand, within LRK53_RS00355 at 81.836 kb on + strand, within LRK53_RS00355 at 81.836 kb on + strand, within LRK53_RS00355 at 81.836 kb on + strand, within LRK53_RS00355 at 81.836 kb on + strand, within LRK53_RS00355 at 81.837 kb on - strand, within LRK53_RS00355 at 81.837 kb on - strand, within LRK53_RS00355 at 81.837 kb on - strand, within LRK53_RS00355 at 81.837 kb on - strand, within LRK53_RS00355 at 81.837 kb on - strand, within LRK53_RS00355 at 81.837 kb on - strand, within LRK53_RS00355 at 81.837 kb on - strand, within LRK53_RS00355 at 81.837 kb on - strand, within LRK53_RS00355 at 81.837 kb on - strand, within LRK53_RS00355 at 81.837 kb on - strand, within LRK53_RS00355 at 81.837 kb on - strand, within LRK53_RS00355 at 81.837 kb on - strand, within LRK53_RS00355 at 81.935 kb on + strand, within LRK53_RS00355 at 81.935 kb on + strand, within LRK53_RS00355 at 81.935 kb on + strand, within LRK53_RS00355 at 81.936 kb on - strand, within LRK53_RS00355 at 81.936 kb on - strand, within LRK53_RS00355 at 81.936 kb on - strand, within LRK53_RS00355 at 81.936 kb on - strand, within LRK53_RS00355 at 81.936 kb on - strand, within LRK53_RS00355 at 81.936 kb on - strand, within LRK53_RS00355 at 81.936 kb on - strand, within LRK53_RS00355 at 81.936 kb on - strand, within LRK53_RS00355 at 81.938 kb on + strand, within LRK53_RS00355 at 82.028 kb on + strand, within LRK53_RS00355 at 82.028 kb on + strand, within LRK53_RS00355 at 82.028 kb on + strand, within LRK53_RS00355 at 82.028 kb on + strand, within LRK53_RS00355 at 82.028 kb on + strand, within LRK53_RS00355 at 82.028 kb on + strand, within LRK53_RS00355 at 82.028 kb on + strand, within LRK53_RS00355 at 82.028 kb on + strand, within LRK53_RS00355 at 82.028 kb on + strand, within LRK53_RS00355 at 82.028 kb on + strand, within LRK53_RS00355 at 82.029 kb on - strand, within LRK53_RS00355 at 82.029 kb on - strand, within LRK53_RS00355 at 82.029 kb on - strand, within LRK53_RS00355 at 82.029 kb on - strand, within LRK53_RS00355 at 82.029 kb on - strand, within LRK53_RS00355 at 82.029 kb on - strand, within LRK53_RS00355 at 82.029 kb on - strand, within LRK53_RS00355 at 82.029 kb on - strand, within LRK53_RS00355 at 82.029 kb on - strand, within LRK53_RS00355 at 82.029 kb on - strand, within LRK53_RS00355 at 82.029 kb on - strand, within LRK53_RS00355 at 82.029 kb on - strand, within LRK53_RS00355 at 82.085 kb on + strand, within LRK53_RS00355 at 82.085 kb on + strand, within LRK53_RS00355 at 82.086 kb on - strand, within LRK53_RS00355 at 82.086 kb on - strand, within LRK53_RS00355 at 82.086 kb on - strand, within LRK53_RS00355 at 82.145 kb on + strand, within LRK53_RS00355 at 82.145 kb on + strand, within LRK53_RS00355 at 82.145 kb on + strand, within LRK53_RS00355 at 82.145 kb on + strand, within LRK53_RS00355 at 82.145 kb on + strand, within LRK53_RS00355 at 82.145 kb on + strand, within LRK53_RS00355 at 82.145 kb on + strand, within LRK53_RS00355 at 82.145 kb on + strand, within LRK53_RS00355 at 82.146 kb on - strand, within LRK53_RS00355 at 82.146 kb on - strand, within LRK53_RS00355 at 82.146 kb on - strand, within LRK53_RS00355 at 82.146 kb on - strand, within LRK53_RS00355 at 82.146 kb on - strand, within LRK53_RS00355 at 82.146 kb on - strand, within LRK53_RS00355 at 82.343 kb on + strand at 82.344 kb on - strand at 82.344 kb on - strand at 82.344 kb on - strand at 82.344 kb on - strand at 82.344 kb on - strand at 82.344 kb on - strand at 82.344 kb on - strand at 82.366 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Aluminum chloride 1mM remove 80,069 - -2.1 80,069 - -1.4 80,078 - +2.6 80,083 + -2.3 80,083 + +0.1 80,083 + -0.5 80,083 + -0.2 80,083 + -0.6 80,083 + -0.3 80,083 + -1.3 80,083 + -0.5 80,083 + -0.8 80,084 - +0.3 80,084 - -0.6 80,084 - +0.5 80,084 - -1.1 80,084 - -0.6 80,084 - -0.5 80,084 - +0.1 80,084 - +0.5 80,084 - -2.9 80,084 - +2.0 80,084 - -0.8 80,084 - -1.3 80,344 + LRK53_RS00345 0.58 +2.1 80,344 + LRK53_RS00345 0.58 -0.3 80,344 + LRK53_RS00345 0.58 +0.4 80,344 + LRK53_RS00345 0.58 -1.9 80,345 - LRK53_RS00345 0.58 +0.3 80,345 - LRK53_RS00345 0.58 +0.1 80,345 - LRK53_RS00345 0.58 -1.3 80,345 - LRK53_RS00345 0.58 -0.0 80,473 + LRK53_RS00345 0.82 +0.5 80,473 + LRK53_RS00345 0.82 -0.9 80,473 + LRK53_RS00345 0.82 +0.4 80,474 - LRK53_RS00345 0.82 +0.8 80,621 + +0.2 80,621 + +0.0 80,621 + +0.1 80,622 - -0.2 80,622 - +0.1 80,676 + -0.5 80,676 + -2.6 80,676 + -0.3 80,677 - -1.0 80,701 + -0.5 80,701 + -0.4 80,701 + +0.5 80,701 + -1.3 80,702 - -1.8 80,763 + -0.9 80,763 + -0.2 80,763 + -1.8 80,764 - -0.5 80,764 - -0.7 80,764 - +4.1 81,101 + LRK53_RS00350 0.12 -2.1 81,101 + LRK53_RS00350 0.12 +1.7 81,101 + LRK53_RS00350 0.12 -0.9 81,101 + LRK53_RS00350 0.12 -1.3 81,101 + LRK53_RS00350 0.12 -1.6 81,102 - LRK53_RS00350 0.13 +0.1 81,102 - LRK53_RS00350 0.13 -2.3 81,119 + LRK53_RS00350 0.17 +0.3 81,119 + LRK53_RS00350 0.17 -1.3 81,119 + LRK53_RS00350 0.17 -1.8 81,120 - LRK53_RS00350 0.18 +0.1 81,120 - LRK53_RS00350 0.18 -0.4 81,120 - LRK53_RS00350 0.18 -1.9 81,120 - LRK53_RS00350 0.18 -4.0 81,120 - LRK53_RS00350 0.18 -1.0 81,255 + LRK53_RS00350 0.55 -0.2 81,255 + LRK53_RS00350 0.55 -1.8 81,256 - LRK53_RS00350 0.56 -0.4 81,256 - LRK53_RS00350 0.56 +1.1 81,277 + LRK53_RS00350 0.61 +0.1 81,277 + LRK53_RS00350 0.61 -0.3 81,278 - LRK53_RS00350 0.62 -2.8 81,278 - LRK53_RS00350 0.62 -0.3 81,278 - LRK53_RS00350 0.62 -0.0 81,278 - LRK53_RS00350 0.62 -0.3 81,656 - LRK53_RS00355 0.20 +0.4 81,656 - LRK53_RS00355 0.20 -1.9 81,769 + LRK53_RS00355 0.33 -1.8 81,770 - LRK53_RS00355 0.33 -1.1 81,836 + LRK53_RS00355 0.40 -0.5 81,836 + LRK53_RS00355 0.40 +0.0 81,836 + LRK53_RS00355 0.40 +0.3 81,836 + LRK53_RS00355 0.40 -0.7 81,836 + LRK53_RS00355 0.40 -0.1 81,836 + LRK53_RS00355 0.40 -0.3 81,837 - LRK53_RS00355 0.40 -1.4 81,837 - LRK53_RS00355 0.40 +0.6 81,837 - LRK53_RS00355 0.40 +1.4 81,837 - LRK53_RS00355 0.40 -0.3 81,837 - LRK53_RS00355 0.40 -1.7 81,837 - LRK53_RS00355 0.40 -0.2 81,837 - LRK53_RS00355 0.40 -2.4 81,837 - LRK53_RS00355 0.40 -1.8 81,837 - LRK53_RS00355 0.40 -0.8 81,837 - LRK53_RS00355 0.40 -0.5 81,837 - LRK53_RS00355 0.40 +0.4 81,837 - LRK53_RS00355 0.40 -1.0 81,935 + LRK53_RS00355 0.51 -0.9 81,935 + LRK53_RS00355 0.51 -0.6 81,935 + LRK53_RS00355 0.51 -0.9 81,936 - LRK53_RS00355 0.51 -3.2 81,936 - LRK53_RS00355 0.51 +1.3 81,936 - LRK53_RS00355 0.51 +0.1 81,936 - LRK53_RS00355 0.51 -0.7 81,936 - LRK53_RS00355 0.51 -0.8 81,936 - LRK53_RS00355 0.51 -1.9 81,936 - LRK53_RS00355 0.51 -0.7 81,936 - LRK53_RS00355 0.51 -0.9 81,938 + LRK53_RS00355 0.51 +0.1 82,028 + LRK53_RS00355 0.61 -0.9 82,028 + LRK53_RS00355 0.61 -0.0 82,028 + LRK53_RS00355 0.61 +0.5 82,028 + LRK53_RS00355 0.61 +0.1 82,028 + LRK53_RS00355 0.61 -1.4 82,028 + LRK53_RS00355 0.61 -0.0 82,028 + LRK53_RS00355 0.61 -1.2 82,028 + LRK53_RS00355 0.61 -2.0 82,028 + LRK53_RS00355 0.61 +1.3 82,028 + LRK53_RS00355 0.61 +0.3 82,029 - LRK53_RS00355 0.61 -0.7 82,029 - LRK53_RS00355 0.61 +1.1 82,029 - LRK53_RS00355 0.61 +0.1 82,029 - LRK53_RS00355 0.61 -0.5 82,029 - LRK53_RS00355 0.61 +2.3 82,029 - LRK53_RS00355 0.61 -0.2 82,029 - LRK53_RS00355 0.61 +0.5 82,029 - LRK53_RS00355 0.61 -0.1 82,029 - LRK53_RS00355 0.61 +0.1 82,029 - LRK53_RS00355 0.61 -2.5 82,029 - LRK53_RS00355 0.61 +0.0 82,029 - LRK53_RS00355 0.61 +0.3 82,085 + LRK53_RS00355 0.68 -0.9 82,085 + LRK53_RS00355 0.68 -0.0 82,086 - LRK53_RS00355 0.68 +0.2 82,086 - LRK53_RS00355 0.68 +2.2 82,086 - LRK53_RS00355 0.68 -0.7 82,145 + LRK53_RS00355 0.74 +2.9 82,145 + LRK53_RS00355 0.74 +0.5 82,145 + LRK53_RS00355 0.74 -0.8 82,145 + LRK53_RS00355 0.74 -1.7 82,145 + LRK53_RS00355 0.74 -2.4 82,145 + LRK53_RS00355 0.74 +0.8 82,145 + LRK53_RS00355 0.74 -1.1 82,145 + LRK53_RS00355 0.74 -0.4 82,146 - LRK53_RS00355 0.74 -3.1 82,146 - LRK53_RS00355 0.74 -2.9 82,146 - LRK53_RS00355 0.74 -0.6 82,146 - LRK53_RS00355 0.74 +0.7 82,146 - LRK53_RS00355 0.74 +0.5 82,146 - LRK53_RS00355 0.74 -0.9 82,343 + -1.2 82,344 - +0.7 82,344 - -0.4 82,344 - -1.5 82,344 - +1.4 82,344 - -0.6 82,344 - +0.7 82,344 - -1.1 82,366 + -1.1
Or see this region's nucleotide sequence