Strain Fitness in Klebsiella pneumoniae MKP103 around KDGMDA_24645

Experiment: KP3_E3_R2_1_0.1_Rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntKDGMDA_24635 and KDGMDA_24640 are separated by 86 nucleotidesKDGMDA_24640 and KDGMDA_24645 are separated by 39 nucleotidesKDGMDA_24645 and KDGMDA_24650 are separated by 3 nucleotidesKDGMDA_24650 and KDGMDA_24655 overlap by 1 nucleotides KDGMDA_24635: KDGMDA_24635 - sodium-potassium/proton antiporter ChaA, at 4,579,342 to 4,580,442 _24635 KDGMDA_24640: KDGMDA_24640 - 3-deoxy-8-phosphooctulonate synthase, at 4,580,529 to 4,581,383 _24640 KDGMDA_24645: KDGMDA_24645 - invasion regulator SirB1, at 4,581,423 to 4,582,235 _24645 KDGMDA_24650: KDGMDA_24650 - invasion regulator SirB2, at 4,582,239 to 4,582,631 _24650 KDGMDA_24655: KDGMDA_24655 - peptide chain release factor N(5)-glutamine methyltransferase, at 4,582,631 to 4,583,479 _24655 Position (kb) 4581 4582 4583Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4580.530 kb on + strandat 4580.530 kb on + strandat 4581.395 kb on - strandat 4581.425 kb on - strandat 4581.435 kb on - strandat 4581.514 kb on + strand, within KDGMDA_24645at 4581.559 kb on + strand, within KDGMDA_24645at 4581.559 kb on + strand, within KDGMDA_24645at 4581.559 kb on + strand, within KDGMDA_24645at 4581.559 kb on + strand, within KDGMDA_24645at 4581.560 kb on - strand, within KDGMDA_24645at 4581.560 kb on - strand, within KDGMDA_24645at 4581.560 kb on - strand, within KDGMDA_24645at 4581.561 kb on + strand, within KDGMDA_24645at 4581.603 kb on - strand, within KDGMDA_24645at 4581.771 kb on + strand, within KDGMDA_24645at 4581.772 kb on - strand, within KDGMDA_24645at 4581.783 kb on - strand, within KDGMDA_24645at 4581.981 kb on + strand, within KDGMDA_24645at 4582.037 kb on - strand, within KDGMDA_24645at 4582.060 kb on - strand, within KDGMDA_24645at 4582.283 kb on + strand, within KDGMDA_24650at 4582.284 kb on - strand, within KDGMDA_24650at 4582.284 kb on - strand, within KDGMDA_24650at 4582.361 kb on + strand, within KDGMDA_24650at 4582.369 kb on - strand, within KDGMDA_24650at 4582.378 kb on + strand, within KDGMDA_24650at 4582.484 kb on + strand, within KDGMDA_24650at 4582.543 kb on + strand, within KDGMDA_24650at 4582.543 kb on + strand, within KDGMDA_24650at 4582.543 kb on + strand, within KDGMDA_24650at 4582.560 kb on + strand, within KDGMDA_24650at 4582.561 kb on - strand, within KDGMDA_24650at 4582.607 kb on - strandat 4582.623 kb on + strandat 4582.623 kb on + strandat 4582.822 kb on + strand, within KDGMDA_24655at 4582.823 kb on - strand, within KDGMDA_24655at 4582.972 kb on + strand, within KDGMDA_24655at 4582.991 kb on + strand, within KDGMDA_24655at 4582.992 kb on - strand, within KDGMDA_24655

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Per-strain Table

Position Strand Gene LocusTag Fraction KP3_E3_R2_1_0.1_Rep2
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4,580,530 + -0.3
4,580,530 + +0.1
4,581,395 - +2.5
4,581,425 - -0.9
4,581,435 - -0.2
4,581,514 + KDGMDA_24645 0.11 -0.9
4,581,559 + KDGMDA_24645 0.17 +1.3
4,581,559 + KDGMDA_24645 0.17 -1.3
4,581,559 + KDGMDA_24645 0.17 -1.3
4,581,559 + KDGMDA_24645 0.17 -0.6
4,581,560 - KDGMDA_24645 0.17 +0.4
4,581,560 - KDGMDA_24645 0.17 +0.3
4,581,560 - KDGMDA_24645 0.17 +1.9
4,581,561 + KDGMDA_24645 0.17 -1.1
4,581,603 - KDGMDA_24645 0.22 -1.4
4,581,771 + KDGMDA_24645 0.43 -1.1
4,581,772 - KDGMDA_24645 0.43 +1.9
4,581,783 - KDGMDA_24645 0.44 -0.3
4,581,981 + KDGMDA_24645 0.69 -3.4
4,582,037 - KDGMDA_24645 0.76 -1.1
4,582,060 - KDGMDA_24645 0.78 -0.6
4,582,283 + KDGMDA_24650 0.11 -0.4
4,582,284 - KDGMDA_24650 0.11 -0.1
4,582,284 - KDGMDA_24650 0.11 -0.7
4,582,361 + KDGMDA_24650 0.31 -2.2
4,582,369 - KDGMDA_24650 0.33 -0.1
4,582,378 + KDGMDA_24650 0.35 +0.9
4,582,484 + KDGMDA_24650 0.62 -1.2
4,582,543 + KDGMDA_24650 0.77 +1.2
4,582,543 + KDGMDA_24650 0.77 -0.1
4,582,543 + KDGMDA_24650 0.77 -0.4
4,582,560 + KDGMDA_24650 0.82 +0.3
4,582,561 - KDGMDA_24650 0.82 -1.5
4,582,607 - -0.0
4,582,623 + +0.3
4,582,623 + -1.3
4,582,822 + KDGMDA_24655 0.22 -0.7
4,582,823 - KDGMDA_24655 0.23 +0.5
4,582,972 + KDGMDA_24655 0.40 -0.1
4,582,991 + KDGMDA_24655 0.42 +1.9
4,582,992 - KDGMDA_24655 0.43 +1.3

Or see this region's nucleotide sequence