Experiment: KP3_E3_R2_1_0.1_Rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt KDGMDA_24635 and KDGMDA_24640 are separated by 86 nucleotides KDGMDA_24640 and KDGMDA_24645 are separated by 39 nucleotides KDGMDA_24645 and KDGMDA_24650 are separated by 3 nucleotides KDGMDA_24650 and KDGMDA_24655 overlap by 1 nucleotides
KDGMDA_24635: KDGMDA_24635 - sodium-potassium/proton antiporter ChaA, at 4,579,342 to 4,580,442
_24635
KDGMDA_24640: KDGMDA_24640 - 3-deoxy-8-phosphooctulonate synthase, at 4,580,529 to 4,581,383
_24640
KDGMDA_24645: KDGMDA_24645 - invasion regulator SirB1, at 4,581,423 to 4,582,235
_24645
KDGMDA_24650: KDGMDA_24650 - invasion regulator SirB2, at 4,582,239 to 4,582,631
_24650
KDGMDA_24655: KDGMDA_24655 - peptide chain release factor N(5)-glutamine methyltransferase, at 4,582,631 to 4,583,479
_24655
Position (kb)
4581
4582
4583 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4580.530 kb on + strand at 4580.530 kb on + strand at 4581.395 kb on - strand at 4581.425 kb on - strand at 4581.435 kb on - strand at 4581.514 kb on + strand, within KDGMDA_24645 at 4581.559 kb on + strand, within KDGMDA_24645 at 4581.559 kb on + strand, within KDGMDA_24645 at 4581.559 kb on + strand, within KDGMDA_24645 at 4581.559 kb on + strand, within KDGMDA_24645 at 4581.560 kb on - strand, within KDGMDA_24645 at 4581.560 kb on - strand, within KDGMDA_24645 at 4581.560 kb on - strand, within KDGMDA_24645 at 4581.561 kb on + strand, within KDGMDA_24645 at 4581.603 kb on - strand, within KDGMDA_24645 at 4581.771 kb on + strand, within KDGMDA_24645 at 4581.772 kb on - strand, within KDGMDA_24645 at 4581.783 kb on - strand, within KDGMDA_24645 at 4581.981 kb on + strand, within KDGMDA_24645 at 4582.037 kb on - strand, within KDGMDA_24645 at 4582.060 kb on - strand, within KDGMDA_24645 at 4582.283 kb on + strand, within KDGMDA_24650 at 4582.284 kb on - strand, within KDGMDA_24650 at 4582.284 kb on - strand, within KDGMDA_24650 at 4582.361 kb on + strand, within KDGMDA_24650 at 4582.369 kb on - strand, within KDGMDA_24650 at 4582.378 kb on + strand, within KDGMDA_24650 at 4582.484 kb on + strand, within KDGMDA_24650 at 4582.543 kb on + strand, within KDGMDA_24650 at 4582.543 kb on + strand, within KDGMDA_24650 at 4582.543 kb on + strand, within KDGMDA_24650 at 4582.560 kb on + strand, within KDGMDA_24650 at 4582.561 kb on - strand, within KDGMDA_24650 at 4582.607 kb on - strand at 4582.623 kb on + strand at 4582.623 kb on + strand at 4582.822 kb on + strand, within KDGMDA_24655 at 4582.823 kb on - strand, within KDGMDA_24655 at 4582.972 kb on + strand, within KDGMDA_24655 at 4582.991 kb on + strand, within KDGMDA_24655 at 4582.992 kb on - strand, within KDGMDA_24655
Per-strain Table
Position Strand Gene LocusTag Fraction KP3_E3_R2_1_0.1_Rep2 remove 4,580,530 + -0.3 4,580,530 + +0.1 4,581,395 - +2.5 4,581,425 - -0.9 4,581,435 - -0.2 4,581,514 + KDGMDA_24645 0.11 -0.9 4,581,559 + KDGMDA_24645 0.17 +1.3 4,581,559 + KDGMDA_24645 0.17 -1.3 4,581,559 + KDGMDA_24645 0.17 -1.3 4,581,559 + KDGMDA_24645 0.17 -0.6 4,581,560 - KDGMDA_24645 0.17 +0.4 4,581,560 - KDGMDA_24645 0.17 +0.3 4,581,560 - KDGMDA_24645 0.17 +1.9 4,581,561 + KDGMDA_24645 0.17 -1.1 4,581,603 - KDGMDA_24645 0.22 -1.4 4,581,771 + KDGMDA_24645 0.43 -1.1 4,581,772 - KDGMDA_24645 0.43 +1.9 4,581,783 - KDGMDA_24645 0.44 -0.3 4,581,981 + KDGMDA_24645 0.69 -3.4 4,582,037 - KDGMDA_24645 0.76 -1.1 4,582,060 - KDGMDA_24645 0.78 -0.6 4,582,283 + KDGMDA_24650 0.11 -0.4 4,582,284 - KDGMDA_24650 0.11 -0.1 4,582,284 - KDGMDA_24650 0.11 -0.7 4,582,361 + KDGMDA_24650 0.31 -2.2 4,582,369 - KDGMDA_24650 0.33 -0.1 4,582,378 + KDGMDA_24650 0.35 +0.9 4,582,484 + KDGMDA_24650 0.62 -1.2 4,582,543 + KDGMDA_24650 0.77 +1.2 4,582,543 + KDGMDA_24650 0.77 -0.1 4,582,543 + KDGMDA_24650 0.77 -0.4 4,582,560 + KDGMDA_24650 0.82 +0.3 4,582,561 - KDGMDA_24650 0.82 -1.5 4,582,607 - -0.0 4,582,623 + +0.3 4,582,623 + -1.3 4,582,822 + KDGMDA_24655 0.22 -0.7 4,582,823 - KDGMDA_24655 0.23 +0.5 4,582,972 + KDGMDA_24655 0.40 -0.1 4,582,991 + KDGMDA_24655 0.42 +1.9 4,582,992 - KDGMDA_24655 0.43 +1.3
Or see this region's nucleotide sequence