Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04078 and MIT1002_04079 are separated by 2 nucleotides MIT1002_04079 and MIT1002_04080 are separated by 17 nucleotides MIT1002_04080 and MIT1002_04081 are separated by 47 nucleotides MIT1002_04081 and MIT1002_04082 are separated by 114 nucleotides MIT1002_04082 and MIT1002_04083 are separated by 12 nucleotides MIT1002_04083 and MIT1002_04084 are separated by 76 nucleotides
MIT1002_04078: MIT1002_04078 - hypothetical protein, at 4,575,906 to 4,576,007
_04078
MIT1002_04079: MIT1002_04079 - hypothetical protein, at 4,576,010 to 4,576,129
_04079
MIT1002_04080: MIT1002_04080 - hypothetical protein, at 4,576,147 to 4,576,524
_04080
MIT1002_04081: MIT1002_04081 - hypothetical protein, at 4,576,572 to 4,576,787
_04081
MIT1002_04082: MIT1002_04082 - Helix-turn-helix domain protein, at 4,576,902 to 4,577,171
_04082
MIT1002_04083: MIT1002_04083 - hypothetical protein, at 4,577,184 to 4,577,771
_04083
MIT1002_04084: MIT1002_04084 - hypothetical protein, at 4,577,848 to 4,578,714
_04084
Position (kb) 4576
4577
4578 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4575.969 kb on + strand, within MIT1002_04078 at 4576.017 kb on - strand at 4576.024 kb on + strand, within MIT1002_04079 at 4576.077 kb on + strand, within MIT1002_04079 at 4576.082 kb on + strand, within MIT1002_04079 at 4576.114 kb on + strand, within MIT1002_04079 at 4576.114 kb on + strand, within MIT1002_04079 at 4576.114 kb on + strand, within MIT1002_04079 at 4576.123 kb on - strand at 4576.233 kb on + strand, within MIT1002_04080 at 4576.257 kb on - strand, within MIT1002_04080 at 4576.413 kb on + strand, within MIT1002_04080 at 4576.435 kb on - strand, within MIT1002_04080 at 4576.441 kb on - strand, within MIT1002_04080 at 4576.491 kb on + strand at 4576.545 kb on - strand at 4576.574 kb on + strand at 4576.618 kb on + strand, within MIT1002_04081 at 4576.619 kb on - strand, within MIT1002_04081 at 4576.620 kb on + strand, within MIT1002_04081 at 4576.620 kb on - strand, within MIT1002_04081 at 4576.629 kb on + strand, within MIT1002_04081 at 4576.637 kb on - strand, within MIT1002_04081 at 4576.662 kb on - strand, within MIT1002_04081 at 4576.675 kb on + strand, within MIT1002_04081 at 4576.725 kb on - strand, within MIT1002_04081 at 4576.725 kb on - strand, within MIT1002_04081 at 4576.951 kb on + strand, within MIT1002_04082 at 4576.957 kb on + strand, within MIT1002_04082 at 4576.984 kb on + strand, within MIT1002_04082 at 4577.008 kb on - strand, within MIT1002_04082 at 4577.068 kb on + strand, within MIT1002_04082 at 4577.068 kb on - strand, within MIT1002_04082 at 4577.070 kb on + strand, within MIT1002_04082 at 4577.075 kb on + strand, within MIT1002_04082 at 4577.087 kb on + strand, within MIT1002_04082 at 4577.088 kb on + strand, within MIT1002_04082 at 4577.150 kb on + strand at 4577.163 kb on - strand at 4577.183 kb on - strand at 4577.231 kb on + strand at 4577.303 kb on + strand, within MIT1002_04083 at 4577.357 kb on + strand, within MIT1002_04083 at 4577.357 kb on + strand, within MIT1002_04083 at 4577.365 kb on - strand, within MIT1002_04083 at 4577.396 kb on + strand, within MIT1002_04083 at 4577.450 kb on - strand, within MIT1002_04083 at 4577.570 kb on - strand, within MIT1002_04083 at 4577.630 kb on - strand, within MIT1002_04083 at 4577.646 kb on + strand, within MIT1002_04083 at 4577.667 kb on + strand, within MIT1002_04083 at 4577.717 kb on + strand at 4577.742 kb on - strand at 4577.750 kb on - strand at 4577.855 kb on + strand at 4577.878 kb on - strand at 4577.903 kb on - strand at 4577.919 kb on + strand at 4578.000 kb on + strand, within MIT1002_04084 at 4578.000 kb on + strand, within MIT1002_04084 at 4578.000 kb on + strand, within MIT1002_04084 at 4578.032 kb on - strand, within MIT1002_04084 at 4578.038 kb on + strand, within MIT1002_04084 at 4578.121 kb on - strand, within MIT1002_04084 at 4578.136 kb on - strand, within MIT1002_04084 at 4578.136 kb on - strand, within MIT1002_04084 at 4578.136 kb on - strand, within MIT1002_04084 at 4578.154 kb on + strand, within MIT1002_04084
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6 remove 4,575,969 + MIT1002_04078 0.62 -0.3 4,576,017 - +1.0 4,576,024 + MIT1002_04079 0.12 -0.7 4,576,077 + MIT1002_04079 0.56 -1.7 4,576,082 + MIT1002_04079 0.60 -3.0 4,576,114 + MIT1002_04079 0.87 +2.0 4,576,114 + MIT1002_04079 0.87 -1.5 4,576,114 + MIT1002_04079 0.87 +2.1 4,576,123 - +1.3 4,576,233 + MIT1002_04080 0.23 +0.9 4,576,257 - MIT1002_04080 0.29 +1.4 4,576,413 + MIT1002_04080 0.70 +1.9 4,576,435 - MIT1002_04080 0.76 +0.8 4,576,441 - MIT1002_04080 0.78 +1.6 4,576,491 + -2.3 4,576,545 - +0.4 4,576,574 + +1.1 4,576,618 + MIT1002_04081 0.21 -0.2 4,576,619 - MIT1002_04081 0.22 -0.5 4,576,620 + MIT1002_04081 0.22 -1.4 4,576,620 - MIT1002_04081 0.22 +1.2 4,576,629 + MIT1002_04081 0.26 -1.5 4,576,637 - MIT1002_04081 0.30 -0.4 4,576,662 - MIT1002_04081 0.42 +0.1 4,576,675 + MIT1002_04081 0.48 -1.1 4,576,725 - MIT1002_04081 0.71 -0.9 4,576,725 - MIT1002_04081 0.71 +0.1 4,576,951 + MIT1002_04082 0.18 -0.2 4,576,957 + MIT1002_04082 0.20 -1.0 4,576,984 + MIT1002_04082 0.30 -1.5 4,577,008 - MIT1002_04082 0.39 -0.5 4,577,068 + MIT1002_04082 0.61 +2.2 4,577,068 - MIT1002_04082 0.61 +1.7 4,577,070 + MIT1002_04082 0.62 -0.1 4,577,075 + MIT1002_04082 0.64 -0.8 4,577,087 + MIT1002_04082 0.69 -0.4 4,577,088 + MIT1002_04082 0.69 -1.0 4,577,150 + +0.1 4,577,163 - -1.3 4,577,183 - -0.8 4,577,231 + +1.3 4,577,303 + MIT1002_04083 0.20 +0.8 4,577,357 + MIT1002_04083 0.29 +0.5 4,577,357 + MIT1002_04083 0.29 +1.2 4,577,365 - MIT1002_04083 0.31 -2.3 4,577,396 + MIT1002_04083 0.36 -0.6 4,577,450 - MIT1002_04083 0.45 +1.2 4,577,570 - MIT1002_04083 0.66 -0.2 4,577,630 - MIT1002_04083 0.76 -1.7 4,577,646 + MIT1002_04083 0.79 -1.4 4,577,667 + MIT1002_04083 0.82 -1.5 4,577,717 + -0.5 4,577,742 - -3.2 4,577,750 - +1.9 4,577,855 + -0.2 4,577,878 - +0.5 4,577,903 - -2.2 4,577,919 + +1.4 4,578,000 + MIT1002_04084 0.18 -2.2 4,578,000 + MIT1002_04084 0.18 +0.0 4,578,000 + MIT1002_04084 0.18 -1.0 4,578,032 - MIT1002_04084 0.21 +0.9 4,578,038 + MIT1002_04084 0.22 +0.4 4,578,121 - MIT1002_04084 0.31 -2.1 4,578,136 - MIT1002_04084 0.33 +0.8 4,578,136 - MIT1002_04084 0.33 -0.2 4,578,136 - MIT1002_04084 0.33 +0.5 4,578,154 + MIT1002_04084 0.35 +0.3
Or see this region's nucleotide sequence