Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04041

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
4,533,976	-		MIT1002_04040	0.37	-1.5
4,533,988	+		MIT1002_04040	0.38	-2.6
4,533,996	-		MIT1002_04040	0.38	-0.9
4,534,173	-		MIT1002_04040	0.50	-2.8
4,534,302	-		MIT1002_04040	0.58	-2.0
4,534,354	+		MIT1002_04040	0.62	+0.2
4,534,379	+		MIT1002_04040	0.63	-9.4
4,534,450	+		MIT1002_04040	0.68	-2.5
4,534,458	-		MIT1002_04040	0.68	-1.8
4,534,460	-		MIT1002_04040	0.68	-2.7
4,534,460	-		MIT1002_04040	0.68	-3.7
4,534,460	-		MIT1002_04040	0.68	-2.7
4,534,465	-		MIT1002_04040	0.69	-2.3
4,534,465	-		MIT1002_04040	0.69	-3.9
4,534,465	-		MIT1002_04040	0.69	-0.7
4,534,490	+		MIT1002_04040	0.70	-1.2
4,534,502	+		MIT1002_04040	0.71	-5.0
4,534,503	-		MIT1002_04040	0.71	-2.0
4,534,503	-		MIT1002_04040	0.71	-2.9
4,534,511	-		MIT1002_04040	0.72	-3.8
4,534,528	-		MIT1002_04040	0.73	-2.2
4,534,563	-		MIT1002_04040	0.75	-2.2
4,534,598	+		MIT1002_04040	0.77	-0.9
4,534,600	+		MIT1002_04040	0.77	-3.7
4,534,662	-		MIT1002_04040	0.81	-3.7
4,534,677	-		MIT1002_04040	0.82	-4.3
4,534,689	-		MIT1002_04040	0.83	-2.4
4,534,696	-		MIT1002_04040	0.84	-3.5
4,534,771	-		MIT1002_04040	0.88	-1.9
4,534,771	-		MIT1002_04040	0.88	-4.7
4,534,780	+		MIT1002_04040	0.89	-3.7
4,534,780	+		MIT1002_04040	0.89	-3.6
4,534,807	-				-2.7
4,534,843	-				-4.5
4,535,021	+				-3.2
4,535,028	-				-2.9
4,535,146	+		MIT1002_04041	0.11	-2.2
4,535,191	-		MIT1002_04041	0.13	-2.2
4,535,216	-		MIT1002_04041	0.14	-1.5
4,535,225	+		MIT1002_04041	0.15	-3.9
4,535,289	-		MIT1002_04041	0.18	-0.2
4,535,289	-		MIT1002_04041	0.18	-2.1
4,535,357	+		MIT1002_04041	0.22	-1.0
4,535,358	-		MIT1002_04041	0.22	-0.9
4,535,546	-		MIT1002_04041	0.32	-3.9
4,535,552	-		MIT1002_04041	0.32	-2.9
4,535,696	+		MIT1002_04041	0.40	-2.8
4,535,777	+		MIT1002_04041	0.45	-1.0
4,535,785	-		MIT1002_04041	0.45	-2.6
4,535,785	-		MIT1002_04041	0.45	-2.3
4,535,785	-		MIT1002_04041	0.45	-1.1
4,535,821	+		MIT1002_04041	0.47	-0.7
4,535,821	+		MIT1002_04041	0.47	-1.1
4,535,828	-		MIT1002_04041	0.47	-2.9
4,535,839	+		MIT1002_04041	0.48	-4.7
4,535,880	-		MIT1002_04041	0.50	-1.9
4,536,004	+		MIT1002_04041	0.57	-4.0
4,536,019	-		MIT1002_04041	0.58	-2.3
4,536,019	-		MIT1002_04041	0.58	-0.2
4,536,020	-		MIT1002_04041	0.58	-3.5
4,536,036	+		MIT1002_04041	0.59	-2.2
4,536,036	+		MIT1002_04041	0.59	-2.6
4,536,036	+		MIT1002_04041	0.59	-1.7
4,536,036	+		MIT1002_04041	0.59	-2.2
4,536,044	-		MIT1002_04041	0.59	-3.4
4,536,046	+		MIT1002_04041	0.59	-3.0
4,536,054	-		MIT1002_04041	0.60	-3.4
4,536,076	-		MIT1002_04041	0.61	-3.4
4,536,076	-		MIT1002_04041	0.61	-1.2
4,536,084	-		MIT1002_04041	0.61	-1.0
4,536,086	-		MIT1002_04041	0.61	+0.6
4,536,138	+		MIT1002_04041	0.64	-3.2
4,536,138	+		MIT1002_04041	0.64	-2.8
4,536,138	+		MIT1002_04041	0.64	+0.6
4,536,138	+		MIT1002_04041	0.64	-2.0
4,536,210	+		MIT1002_04041	0.68	+0.8
4,536,231	-		MIT1002_04041	0.69	-0.0
4,536,332	+		MIT1002_04041	0.75	-3.0
4,536,389	+		MIT1002_04041	0.78	-1.6
4,536,492	-		MIT1002_04041	0.83	-3.2
4,536,523	+		MIT1002_04041	0.85	-3.0
4,536,526	+		MIT1002_04041	0.85	+0.8
4,536,531	+		MIT1002_04041	0.85	+1.2
4,536,531	+		MIT1002_04041	0.85	-3.7
4,536,531	+		MIT1002_04041	0.85	-2.7
4,536,557	+		MIT1002_04041	0.87	+0.4
4,536,583	-		MIT1002_04041	0.88	-3.9
4,536,659	+				+0.4
4,536,667	-				-7.0
4,536,677	-				-1.6
4,536,692	+				+0.4
4,536,824	+				-2.0
4,536,846	-				+0.2
4,537,095	+				-2.2
4,537,141	-				-2.1
4,537,156	-				+0.2
4,537,278	+				-2.2
4,537,286	-				-3.0
4,537,286	-				-1.1
4,537,288	-				-0.1
4,537,307	+		MIT1002_04042	0.10	-0.4
4,537,377	+		MIT1002_04042	0.22	-1.8
4,537,385	-		MIT1002_04042	0.23	-0.4
4,537,385	-		MIT1002_04042	0.23	-0.0
4,537,385	-		MIT1002_04042	0.23	-1.5
4,537,404	-		MIT1002_04042	0.26	-0.1
4,537,422	-		MIT1002_04042	0.29	+0.6
4,537,469	-		MIT1002_04042	0.36	+2.6
4,537,493	-		MIT1002_04042	0.40	-1.2
4,537,544	-		MIT1002_04042	0.49	-0.7
4,537,546	+		MIT1002_04042	0.49	+1.2
4,537,546	+		MIT1002_04042	0.49	-0.7
4,537,546	+		MIT1002_04042	0.49	+0.7
4,537,554	-		MIT1002_04042	0.50	+0.2
4,537,554	-		MIT1002_04042	0.50	+1.2
4,537,565	+		MIT1002_04042	0.52	+2.5
4,537,597	-		MIT1002_04042	0.57	-0.9
4,537,621	-		MIT1002_04042	0.61	+0.2
4,537,705	-		MIT1002_04042	0.75	+0.0
4,537,715	-		MIT1002_04042	0.76	+0.3
4,537,765	+		MIT1002_04042	0.84	+0.5
4,537,798	+		MIT1002_04042	0.90	+0.4
4,537,798	+		MIT1002_04042	0.90	-0.8