Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03848

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
4,309,708	-		MIT1002_03846	0.66	+1.5
4,309,776	+		MIT1002_03846	0.69	+1.0
4,309,787	+		MIT1002_03846	0.70	+0.5
4,309,787	+		MIT1002_03846	0.70	-0.2
4,309,854	-		MIT1002_03846	0.73	+0.1
4,309,854	-		MIT1002_03846	0.73	-1.4
4,309,886	+		MIT1002_03846	0.75	+0.3
4,310,042	-		MIT1002_03846	0.83	-0.6
4,310,056	+		MIT1002_03846	0.84	-2.3
4,310,056	+		MIT1002_03846	0.84	-0.5
4,310,056	+		MIT1002_03846	0.84	-0.3
4,310,147	+		MIT1002_03846	0.89	+1.1
4,310,172	+				+0.1
4,310,180	+				-0.6
4,310,185	+				-0.2
4,310,193	-				-1.4
4,310,215	-				-1.4
4,310,273	+				+0.0
4,310,280	+				-0.4
4,310,306	+				+0.5
4,310,319	+				-0.3
4,310,319	+				-1.0
4,310,319	+				+0.5
4,310,327	-				-1.4
4,310,474	-				+2.4
4,310,485	-				+0.5
4,310,498	+				+1.7
4,310,529	-				+0.3
4,310,660	-				-0.0
4,310,671	+				+0.5
4,310,679	-				-0.6
4,310,681	-				-0.4
4,310,724	+				+0.0
4,310,724	+				+1.6
4,310,732	-				+0.3
4,310,732	-				+0.8
4,310,732	-				-0.5
4,310,732	-				+1.1
4,310,742	+				+0.3
4,310,750	-				+0.6
4,310,899	+		MIT1002_03848	0.21	-0.4
4,310,907	-		MIT1002_03848	0.22	-2.2
4,310,907	-		MIT1002_03848	0.22	-0.5
4,310,964	+		MIT1002_03848	0.27	-1.0
4,310,964	+		MIT1002_03848	0.27	-0.4
4,310,964	+		MIT1002_03848	0.27	-1.9
4,310,964	+		MIT1002_03848	0.27	+1.5
4,310,964	+		MIT1002_03848	0.27	+2.0
4,310,972	-		MIT1002_03848	0.27	+0.1
4,310,972	-		MIT1002_03848	0.27	+0.5
4,310,972	-		MIT1002_03848	0.27	-1.4
4,310,972	-		MIT1002_03848	0.27	+2.7
4,310,972	-		MIT1002_03848	0.27	+1.2
4,310,975	+		MIT1002_03848	0.28	+0.4
4,310,977	+		MIT1002_03848	0.28	+0.7
4,310,985	+		MIT1002_03848	0.28	+1.1
4,311,019	+		MIT1002_03848	0.31	+0.3
4,311,032	+		MIT1002_03848	0.33	-2.2
4,311,040	-		MIT1002_03848	0.33	+0.7
4,311,133	+		MIT1002_03848	0.42	+0.1
4,311,158	+		MIT1002_03848	0.44	-2.5
4,311,166	-		MIT1002_03848	0.44	+1.5
4,311,173	+		MIT1002_03848	0.45	+0.2
4,311,182	-		MIT1002_03848	0.46	+1.8
4,311,187	-		MIT1002_03848	0.46	+0.6
4,311,188	+		MIT1002_03848	0.46	-1.9
4,311,204	+		MIT1002_03848	0.48	-0.4
4,311,258	-		MIT1002_03848	0.53	-1.2
4,311,280	+		MIT1002_03848	0.54	-1.6
4,311,280	+		MIT1002_03848	0.54	-0.3
4,311,288	-		MIT1002_03848	0.55	-0.4
4,311,410	+		MIT1002_03848	0.66	+0.8
4,311,410	+		MIT1002_03848	0.66	-0.2
4,311,410	+		MIT1002_03848	0.66	+0.1
4,311,446	+		MIT1002_03848	0.69	-0.5
4,311,453	+		MIT1002_03848	0.70	+0.0
4,311,454	-		MIT1002_03848	0.70	-0.0
4,311,454	-		MIT1002_03848	0.70	-2.4
4,311,460	+		MIT1002_03848	0.70	-1.4
4,311,482	+		MIT1002_03848	0.72	-0.3
4,311,482	+		MIT1002_03848	0.72	-0.1
4,311,482	+		MIT1002_03848	0.72	+1.4
4,311,490	-		MIT1002_03848	0.73	-1.0
4,311,566	-		MIT1002_03848	0.80	+0.4
4,311,693	-				+2.6
4,311,693	-				-1.6
4,311,695	+				-1.7
4,311,695	+				+0.1
4,311,703	-				-0.7
4,311,772	+				-2.1
4,311,780	-				-0.6
4,311,790	-				-2.8
4,311,807	-				+0.1
4,311,821	-				-0.5
4,311,848	-				-0.6
4,311,856	-				-0.2
4,311,865	+				+0.1
4,311,909	+				+0.5
4,311,926	+				+2.7
4,311,933	+				+0.1
4,311,943	+				-0.2
4,311,951	-				+0.7
4,311,983	-		MIT1002_03849	0.12	-1.4
4,312,031	+		MIT1002_03849	0.15	-4.4
4,312,039	-		MIT1002_03849	0.15	+0.0
4,312,068	+		MIT1002_03849	0.17	+0.3
4,312,086	+		MIT1002_03849	0.18	+1.0
4,312,098	+		MIT1002_03849	0.19	+1.4
4,312,132	+		MIT1002_03849	0.21	+0.6
4,312,140	-		MIT1002_03849	0.22	-2.9
4,312,140	-		MIT1002_03849	0.22	-0.2
4,312,140	-		MIT1002_03849	0.22	-0.1
4,312,142	+		MIT1002_03849	0.22	+1.4
4,312,206	+		MIT1002_03849	0.26	-1.8
4,312,206	+		MIT1002_03849	0.26	-1.2
4,312,243	-		MIT1002_03849	0.28	+1.8
4,312,243	-		MIT1002_03849	0.28	+0.8
4,312,297	+		MIT1002_03849	0.32	-1.2
4,312,304	-		MIT1002_03849	0.32	+0.8
4,312,306	+		MIT1002_03849	0.32	-0.1
4,312,309	-		MIT1002_03849	0.33	-0.1
4,312,311	+		MIT1002_03849	0.33	-0.4
4,312,315	+		MIT1002_03849	0.33	+0.2
4,312,360	-		MIT1002_03849	0.36	-2.6
4,312,401	-		MIT1002_03849	0.38	-1.6
4,312,447	+		MIT1002_03849	0.41	+0.6
4,312,553	+		MIT1002_03849	0.48	-0.7
4,312,559	-		MIT1002_03849	0.48	-0.7
4,312,639	+		MIT1002_03849	0.53	+0.7
4,312,640	-		MIT1002_03849	0.54	-0.9
4,312,678	+		MIT1002_03849	0.56	-2.7
4,312,699	-		MIT1002_03849	0.57	+0.1
4,312,753	+		MIT1002_03849	0.61	-0.8
4,312,793	+		MIT1002_03849	0.63	+0.8