Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03508

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_03507 and MIT1002_03508 are separated by 3 nucleotidesMIT1002_03508 and MIT1002_03509 are separated by 257 nucleotides MIT1002_03507: MIT1002_03507 - Acetate transporter ActP, at 3,918,254 to 3,919,960 _03507 MIT1002_03508: MIT1002_03508 - putative solute:sodium symporter small subunit, at 3,919,964 to 3,920,230 _03508 MIT1002_03509: MIT1002_03509 - Aerobic respiration control sensor protein ArcB, at 3,920,488 to 3,923,931 _03509 Position (kb) 3919 3920 3921Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 3919.023 kb on - strand, within MIT1002_03507at 3919.052 kb on + strand, within MIT1002_03507at 3919.052 kb on + strand, within MIT1002_03507at 3919.060 kb on - strand, within MIT1002_03507at 3919.060 kb on - strand, within MIT1002_03507at 3919.060 kb on - strand, within MIT1002_03507at 3919.072 kb on + strand, within MIT1002_03507at 3919.080 kb on - strand, within MIT1002_03507at 3919.080 kb on - strand, within MIT1002_03507at 3919.100 kb on + strand, within MIT1002_03507at 3919.137 kb on + strand, within MIT1002_03507at 3919.157 kb on - strand, within MIT1002_03507at 3919.167 kb on - strand, within MIT1002_03507at 3919.193 kb on - strand, within MIT1002_03507at 3919.303 kb on + strand, within MIT1002_03507at 3919.373 kb on + strand, within MIT1002_03507at 3919.410 kb on + strand, within MIT1002_03507at 3919.430 kb on + strand, within MIT1002_03507at 3919.437 kb on - strand, within MIT1002_03507at 3919.454 kb on + strand, within MIT1002_03507at 3919.462 kb on - strand, within MIT1002_03507at 3919.537 kb on - strand, within MIT1002_03507at 3919.590 kb on + strand, within MIT1002_03507at 3919.696 kb on + strand, within MIT1002_03507at 3919.910 kb on - strandat 3919.910 kb on - strandat 3919.910 kb on - strandat 3919.946 kb on + strandat 3919.947 kb on + strandat 3919.972 kb on + strandat 3919.980 kb on - strandat 3919.998 kb on + strand, within MIT1002_03508at 3920.006 kb on - strand, within MIT1002_03508at 3920.062 kb on - strand, within MIT1002_03508at 3920.062 kb on - strand, within MIT1002_03508at 3920.157 kb on + strand, within MIT1002_03508at 3920.184 kb on - strand, within MIT1002_03508at 3920.190 kb on - strand, within MIT1002_03508at 3920.240 kb on - strandat 3920.240 kb on - strandat 3920.250 kb on - strandat 3920.286 kb on - strandat 3920.375 kb on - strandat 3920.387 kb on - strandat 3920.416 kb on + strandat 3920.417 kb on + strandat 3920.430 kb on - strandat 3920.509 kb on - strandat 3920.517 kb on - strandat 3920.523 kb on - strandat 3920.533 kb on - strandat 3920.625 kb on + strandat 3920.625 kb on + strandat 3920.625 kb on + strandat 3920.633 kb on - strandat 3920.633 kb on - strandat 3920.633 kb on - strandat 3920.710 kb on + strandat 3920.713 kb on - strandat 3920.713 kb on - strandat 3920.713 kb on - strandat 3920.718 kb on - strandat 3920.786 kb on + strandat 3920.833 kb on - strand, within MIT1002_03509at 3920.859 kb on - strand, within MIT1002_03509at 3920.869 kb on - strand, within MIT1002_03509at 3920.871 kb on - strand, within MIT1002_03509at 3920.874 kb on - strand, within MIT1002_03509at 3920.906 kb on + strand, within MIT1002_03509at 3920.914 kb on - strand, within MIT1002_03509at 3920.914 kb on - strand, within MIT1002_03509at 3920.972 kb on - strand, within MIT1002_03509at 3920.997 kb on + strand, within MIT1002_03509at 3920.998 kb on + strand, within MIT1002_03509at 3921.018 kb on + strand, within MIT1002_03509at 3921.018 kb on + strand, within MIT1002_03509at 3921.026 kb on - strand, within MIT1002_03509at 3921.026 kb on - strand, within MIT1002_03509at 3921.029 kb on + strand, within MIT1002_03509at 3921.036 kb on - strand, within MIT1002_03509at 3921.037 kb on - strand, within MIT1002_03509at 3921.039 kb on + strand, within MIT1002_03509at 3921.048 kb on - strand, within MIT1002_03509at 3921.054 kb on - strand, within MIT1002_03509at 3921.094 kb on + strand, within MIT1002_03509at 3921.155 kb on + strand, within MIT1002_03509at 3921.183 kb on - strand, within MIT1002_03509at 3921.217 kb on + strand, within MIT1002_03509

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
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3,919,023 - MIT1002_03507 0.45 -3.5
3,919,052 + MIT1002_03507 0.47 -1.4
3,919,052 + MIT1002_03507 0.47 -0.1
3,919,060 - MIT1002_03507 0.47 -1.2
3,919,060 - MIT1002_03507 0.47 -3.8
3,919,060 - MIT1002_03507 0.47 -3.5
3,919,072 + MIT1002_03507 0.48 -4.9
3,919,080 - MIT1002_03507 0.48 -1.9
3,919,080 - MIT1002_03507 0.48 -4.4
3,919,100 + MIT1002_03507 0.50 -3.4
3,919,137 + MIT1002_03507 0.52 -1.4
3,919,157 - MIT1002_03507 0.53 -1.0
3,919,167 - MIT1002_03507 0.53 -5.6
3,919,193 - MIT1002_03507 0.55 -0.7
3,919,303 + MIT1002_03507 0.61 -0.3
3,919,373 + MIT1002_03507 0.66 -1.0
3,919,410 + MIT1002_03507 0.68 -1.0
3,919,430 + MIT1002_03507 0.69 -1.7
3,919,437 - MIT1002_03507 0.69 -0.4
3,919,454 + MIT1002_03507 0.70 -1.6
3,919,462 - MIT1002_03507 0.71 -3.0
3,919,537 - MIT1002_03507 0.75 -2.9
3,919,590 + MIT1002_03507 0.78 -1.9
3,919,696 + MIT1002_03507 0.84 -2.2
3,919,910 - -3.5
3,919,910 - -2.9
3,919,910 - -0.1
3,919,946 + -2.3
3,919,947 + -0.1
3,919,972 + -3.3
3,919,980 - -3.0
3,919,998 + MIT1002_03508 0.13 -0.9
3,920,006 - MIT1002_03508 0.16 -3.3
3,920,062 - MIT1002_03508 0.37 -3.5
3,920,062 - MIT1002_03508 0.37 -4.4
3,920,157 + MIT1002_03508 0.72 -1.3
3,920,184 - MIT1002_03508 0.82 -3.6
3,920,190 - MIT1002_03508 0.85 -3.2
3,920,240 - -1.5
3,920,240 - -0.3
3,920,250 - -1.5
3,920,286 - -2.2
3,920,375 - -2.9
3,920,387 - -1.4
3,920,416 + -2.6
3,920,417 + -1.8
3,920,430 - -1.0
3,920,509 - +2.7
3,920,517 - +2.6
3,920,523 - +3.3
3,920,533 - -0.9
3,920,625 + +1.3
3,920,625 + +0.7
3,920,625 + +0.9
3,920,633 - +0.6
3,920,633 - +0.9
3,920,633 - -0.5
3,920,710 + +1.0
3,920,713 - +3.3
3,920,713 - +0.7
3,920,713 - +2.5
3,920,718 - +0.9
3,920,786 + +0.7
3,920,833 - MIT1002_03509 0.10 +2.0
3,920,859 - MIT1002_03509 0.11 +0.9
3,920,869 - MIT1002_03509 0.11 +1.9
3,920,871 - MIT1002_03509 0.11 +0.2
3,920,874 - MIT1002_03509 0.11 -0.4
3,920,906 + MIT1002_03509 0.12 -1.2
3,920,914 - MIT1002_03509 0.12 +0.8
3,920,914 - MIT1002_03509 0.12 -0.4
3,920,972 - MIT1002_03509 0.14 -0.2
3,920,997 + MIT1002_03509 0.15 +1.6
3,920,998 + MIT1002_03509 0.15 -0.3
3,921,018 + MIT1002_03509 0.15 -0.9
3,921,018 + MIT1002_03509 0.15 +0.8
3,921,026 - MIT1002_03509 0.16 +1.1
3,921,026 - MIT1002_03509 0.16 +1.7
3,921,029 + MIT1002_03509 0.16 -1.3
3,921,036 - MIT1002_03509 0.16 +1.0
3,921,037 - MIT1002_03509 0.16 +0.6
3,921,039 + MIT1002_03509 0.16 +0.2
3,921,048 - MIT1002_03509 0.16 -0.4
3,921,054 - MIT1002_03509 0.16 +1.3
3,921,094 + MIT1002_03509 0.18 +0.5
3,921,155 + MIT1002_03509 0.19 +0.9
3,921,183 - MIT1002_03509 0.20 +0.1
3,921,217 + MIT1002_03509 0.21 -0.1

Or see this region's nucleotide sequence