Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03507

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
3,917,263	-		MIT1002_03506	0.51	+0.7
3,917,352	-		MIT1002_03506	0.56	+0.8
3,917,420	-		MIT1002_03506	0.60	+0.7
3,917,516	+		MIT1002_03506	0.65	+0.6
3,917,552	-		MIT1002_03506	0.67	+0.7
3,917,554	+		MIT1002_03506	0.67	+0.9
3,917,562	-		MIT1002_03506	0.68	+0.5
3,917,563	-		MIT1002_03506	0.68	-1.0
3,917,595	-		MIT1002_03506	0.69	+0.2
3,917,595	-		MIT1002_03506	0.69	-3.5
3,917,638	+		MIT1002_03506	0.72	+0.4
3,917,646	-		MIT1002_03506	0.72	-0.2
3,917,646	-		MIT1002_03506	0.72	-2.0
3,917,754	-		MIT1002_03506	0.78	+0.2
3,917,850	+		MIT1002_03506	0.83	+3.2
3,917,855	+		MIT1002_03506	0.84	+0.7
3,917,855	+		MIT1002_03506	0.84	-2.4
3,917,870	+		MIT1002_03506	0.84	+2.2
3,917,943	-		MIT1002_03506	0.88	-1.3
3,917,995	-				-2.0
3,918,061	-				-2.1
3,918,126	+				-2.5
3,918,230	+				-2.7
3,918,247	+				-0.1
3,918,255	-				-0.8
3,918,268	+				-1.8
3,918,279	+				-1.7
3,918,297	+				-4.2
3,918,339	+				-0.1
3,918,405	-				-3.4
3,918,478	+		MIT1002_03507	0.13	-3.5
3,918,486	-		MIT1002_03507	0.14	-0.9
3,918,532	-		MIT1002_03507	0.16	-2.8
3,918,633	-		MIT1002_03507	0.22	-2.8
3,918,681	+		MIT1002_03507	0.25	-3.2
3,918,737	+		MIT1002_03507	0.28	-3.6
3,918,742	+		MIT1002_03507	0.29	-1.9
3,918,750	-		MIT1002_03507	0.29	-3.4
3,918,828	-		MIT1002_03507	0.34	-3.3
3,918,865	-		MIT1002_03507	0.36	-2.8
3,918,865	-		MIT1002_03507	0.36	-4.5
3,918,872	-		MIT1002_03507	0.36	-2.4
3,918,891	+		MIT1002_03507	0.37	-2.3
3,918,925	-		MIT1002_03507	0.39	-2.3
3,918,932	+		MIT1002_03507	0.40	-3.1
3,919,023	-		MIT1002_03507	0.45	-3.5
3,919,052	+		MIT1002_03507	0.47	-1.4
3,919,052	+		MIT1002_03507	0.47	-0.1
3,919,060	-		MIT1002_03507	0.47	-1.2
3,919,060	-		MIT1002_03507	0.47	-3.8
3,919,060	-		MIT1002_03507	0.47	-3.5
3,919,072	+		MIT1002_03507	0.48	-4.9
3,919,080	-		MIT1002_03507	0.48	-1.9
3,919,080	-		MIT1002_03507	0.48	-4.4
3,919,100	+		MIT1002_03507	0.50	-3.4
3,919,137	+		MIT1002_03507	0.52	-1.4
3,919,157	-		MIT1002_03507	0.53	-1.0
3,919,167	-		MIT1002_03507	0.53	-5.6
3,919,193	-		MIT1002_03507	0.55	-0.7
3,919,303	+		MIT1002_03507	0.61	-0.3
3,919,373	+		MIT1002_03507	0.66	-1.0
3,919,410	+		MIT1002_03507	0.68	-1.0
3,919,430	+		MIT1002_03507	0.69	-1.7
3,919,437	-		MIT1002_03507	0.69	-0.4
3,919,454	+		MIT1002_03507	0.70	-1.6
3,919,462	-		MIT1002_03507	0.71	-3.0
3,919,537	-		MIT1002_03507	0.75	-2.9
3,919,590	+		MIT1002_03507	0.78	-1.9
3,919,696	+		MIT1002_03507	0.84	-2.2
3,919,910	-				-3.5
3,919,910	-				-2.9
3,919,910	-				-0.1
3,919,946	+				-2.3
3,919,947	+				-0.1
3,919,972	+				-3.3
3,919,980	-				-3.0
3,919,998	+		MIT1002_03508	0.13	-0.9
3,920,006	-		MIT1002_03508	0.16	-3.3
3,920,062	-		MIT1002_03508	0.37	-3.5
3,920,062	-		MIT1002_03508	0.37	-4.4
3,920,157	+		MIT1002_03508	0.72	-1.3
3,920,184	-		MIT1002_03508	0.82	-3.6
3,920,190	-		MIT1002_03508	0.85	-3.2
3,920,240	-				-1.5
3,920,240	-				-0.3
3,920,250	-				-1.5
3,920,286	-				-2.2
3,920,375	-				-2.9
3,920,387	-				-1.4
3,920,416	+				-2.6
3,920,417	+				-1.8
3,920,430	-				-1.0
3,920,509	-				+2.7
3,920,517	-				+2.6
3,920,523	-				+3.3
3,920,533	-				-0.9
3,920,625	+				+1.3
3,920,625	+				+0.7
3,920,625	+				+0.9
3,920,633	-				+0.6
3,920,633	-				+0.9
3,920,633	-				-0.5
3,920,710	+				+1.0
3,920,713	-				+3.3
3,920,713	-				+0.7
3,920,713	-				+2.5
3,920,718	-				+0.9
3,920,786	+				+0.7
3,920,833	-		MIT1002_03509	0.10	+2.0
3,920,859	-		MIT1002_03509	0.11	+0.9
3,920,869	-		MIT1002_03509	0.11	+1.9
3,920,871	-		MIT1002_03509	0.11	+0.2
3,920,874	-		MIT1002_03509	0.11	-0.4
3,920,906	+		MIT1002_03509	0.12	-1.2
3,920,914	-		MIT1002_03509	0.12	+0.8
3,920,914	-		MIT1002_03509	0.12	-0.4