Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03504

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
3,913,642	+		MIT1002_03502	0.60	+0.0
3,913,682	-		MIT1002_03502	0.68	+0.2
3,913,713	-		MIT1002_03502	0.74	+0.4
3,913,720	+		MIT1002_03502	0.76	+1.3
3,913,837	+				+1.0
3,913,879	+				-3.2
3,913,925	-				-1.4
3,913,958	-				+0.8
3,913,978	+				-2.3
3,914,023	-				-1.3
3,914,023	-				-2.0
3,914,023	-				+0.6
3,914,067	-		MIT1002_03503	0.21	+2.9
3,914,356	+				+0.9
3,914,364	-				+0.3
3,914,370	+				-0.9
3,914,370	+				+1.5
3,914,378	-				-0.7
3,914,378	-				-1.9
3,914,434	+				-0.6
3,914,436	+				+1.8
3,914,436	+				-0.4
3,914,456	+				+1.4
3,914,464	-				+1.2
3,914,579	+				-1.0
3,914,586	+				-2.2
3,914,594	-				-1.1
3,914,598	+				-1.6
3,914,598	+				-1.8
3,914,598	+				+0.5
3,914,613	+				+0.2
3,914,672	-				-0.3
3,914,769	-		MIT1002_03504	0.15	+0.5
3,914,785	+		MIT1002_03504	0.17	-0.0
3,914,785	+		MIT1002_03504	0.17	+1.0
3,914,790	+		MIT1002_03504	0.17	-0.4
3,914,840	-		MIT1002_03504	0.23	-3.0
3,914,840	-		MIT1002_03504	0.23	-1.2
3,914,921	+		MIT1002_03504	0.31	-0.4
3,914,921	+		MIT1002_03504	0.31	-0.4
3,914,958	-		MIT1002_03504	0.35	+0.7
3,914,972	+		MIT1002_03504	0.36	-0.2
3,914,972	+		MIT1002_03504	0.36	+1.0
3,914,972	+		MIT1002_03504	0.36	-1.4
3,914,980	-		MIT1002_03504	0.37	-1.6
3,914,980	-		MIT1002_03504	0.37	-2.6
3,914,982	+		MIT1002_03504	0.37	+2.8
3,914,982	+		MIT1002_03504	0.37	+0.5
3,914,982	-		MIT1002_03504	0.37	-0.4
3,914,982	-		MIT1002_03504	0.37	+1.6
3,914,982	-		MIT1002_03504	0.37	+1.7
3,914,982	-		MIT1002_03504	0.37	-2.8
3,915,059	+		MIT1002_03504	0.45	-2.6
3,915,059	+		MIT1002_03504	0.45	-1.8
3,915,059	+		MIT1002_03504	0.45	-0.1
3,915,059	+		MIT1002_03504	0.45	-0.4
3,915,067	-		MIT1002_03504	0.46	-0.5
3,915,067	-		MIT1002_03504	0.46	+0.5
3,915,105	+		MIT1002_03504	0.50	+1.9
3,915,130	+		MIT1002_03504	0.52	-1.3
3,915,138	+		MIT1002_03504	0.53	-1.8
3,915,146	-		MIT1002_03504	0.54	-0.7
3,915,146	-		MIT1002_03504	0.54	+0.2
3,915,146	-		MIT1002_03504	0.54	-0.3
3,915,174	+		MIT1002_03504	0.57	-0.7
3,915,192	-		MIT1002_03504	0.58	-0.5
3,915,247	+		MIT1002_03504	0.64	+1.0
3,915,254	+		MIT1002_03504	0.65	+0.7
3,915,254	+		MIT1002_03504	0.65	-1.8
3,915,262	-		MIT1002_03504	0.66	-2.2
3,915,262	-		MIT1002_03504	0.66	+0.6
3,915,262	-		MIT1002_03504	0.66	-0.0
3,915,296	+		MIT1002_03504	0.69	+1.0
3,915,296	+		MIT1002_03504	0.69	-0.6
3,915,319	-		MIT1002_03504	0.71	+0.9
3,915,321	+		MIT1002_03504	0.72	-2.4
3,915,329	-		MIT1002_03504	0.72	+0.0
3,915,346	-		MIT1002_03504	0.74	-2.4
3,915,373	-		MIT1002_03504	0.77	+0.1
3,915,374	-		MIT1002_03504	0.77	+0.2
3,915,374	-		MIT1002_03504	0.77	-3.0
3,915,399	+		MIT1002_03504	0.80	-0.9
3,915,421	+		MIT1002_03504	0.82	+0.6
3,915,421	+		MIT1002_03504	0.82	-2.4
3,915,429	-		MIT1002_03504	0.83	-4.4
3,915,429	-		MIT1002_03504	0.83	+0.3
3,915,429	-		MIT1002_03504	0.83	-2.5
3,915,440	-		MIT1002_03504	0.84	+1.7
3,915,460	-		MIT1002_03504	0.86	-0.1
3,915,484	-		MIT1002_03504	0.88	+0.9
3,915,519	-				+1.2
3,915,519	-				-1.4
3,915,555	+				-0.5
3,915,606	-				+1.0
3,915,630	-				+1.0
3,915,757	-		MIT1002_03505	0.18	+0.8
3,915,764	-		MIT1002_03505	0.19	-1.6
3,915,794	+		MIT1002_03505	0.23	-0.6
3,915,794	+		MIT1002_03505	0.23	-1.5
3,915,802	-		MIT1002_03505	0.25	-1.8
3,915,836	-		MIT1002_03505	0.30	-0.2
3,915,842	+		MIT1002_03505	0.30	-0.8
3,915,850	-		MIT1002_03505	0.32	-3.7
3,915,865	+		MIT1002_03505	0.34	-1.8
3,915,873	-		MIT1002_03505	0.35	-2.0
3,915,883	-		MIT1002_03505	0.36	-3.9
3,915,891	+		MIT1002_03505	0.38	-2.9
3,915,891	+		MIT1002_03505	0.38	-1.0
3,915,923	-		MIT1002_03505	0.42	-1.6
3,915,944	-		MIT1002_03505	0.45	-1.4
3,916,011	-		MIT1002_03505	0.55	+0.5
3,916,029	-		MIT1002_03505	0.58	-1.1
3,916,196	-		MIT1002_03505	0.82	-3.4
3,916,198	-		MIT1002_03505	0.82	-0.4
3,916,355	-				+0.2
3,916,499	+				-1.8
3,916,576	+		MIT1002_03506	0.14	+0.6
3,916,576	+		MIT1002_03506	0.14	-2.3
3,916,576	+		MIT1002_03506	0.14	-1.3
3,916,584	-		MIT1002_03506	0.14	+2.7