Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03318 and MIT1002_03319 overlap by 14 nucleotides MIT1002_03319 and MIT1002_03320 overlap by 32 nucleotides
MIT1002_03318: MIT1002_03318 - Sensor protein EvgS precursor, at 3,702,578 to 3,705,091
_03318
MIT1002_03319: MIT1002_03319 - hypothetical protein, at 3,705,078 to 3,706,268
_03319
MIT1002_03320: MIT1002_03320 - Putative electron transport protein YccM, at 3,706,237 to 3,708,333
_03320
Position (kb)
3705
3706
3707 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3704.150 kb on + strand, within MIT1002_03318 at 3704.177 kb on + strand, within MIT1002_03318 at 3704.179 kb on - strand, within MIT1002_03318 at 3704.203 kb on + strand, within MIT1002_03318 at 3704.203 kb on + strand, within MIT1002_03318 at 3704.211 kb on - strand, within MIT1002_03318 at 3704.211 kb on - strand, within MIT1002_03318 at 3704.211 kb on - strand, within MIT1002_03318 at 3704.211 kb on - strand, within MIT1002_03318 at 3704.213 kb on - strand, within MIT1002_03318 at 3704.322 kb on + strand, within MIT1002_03318 at 3704.347 kb on + strand, within MIT1002_03318 at 3704.497 kb on + strand, within MIT1002_03318 at 3704.522 kb on - strand, within MIT1002_03318 at 3704.563 kb on + strand, within MIT1002_03318 at 3704.563 kb on + strand, within MIT1002_03318 at 3704.563 kb on + strand, within MIT1002_03318 at 3704.718 kb on + strand, within MIT1002_03318 at 3704.819 kb on - strand, within MIT1002_03318 at 3704.861 kb on - strand at 3704.886 kb on - strand at 3704.886 kb on - strand at 3704.886 kb on - strand at 3704.943 kb on - strand at 3704.959 kb on - strand at 3704.967 kb on - strand at 3704.967 kb on - strand at 3705.053 kb on - strand at 3705.091 kb on + strand at 3705.163 kb on + strand at 3705.164 kb on + strand at 3705.171 kb on - strand at 3705.433 kb on + strand, within MIT1002_03319 at 3705.469 kb on + strand, within MIT1002_03319 at 3705.469 kb on + strand, within MIT1002_03319 at 3705.503 kb on - strand, within MIT1002_03319 at 3705.513 kb on - strand, within MIT1002_03319 at 3705.595 kb on + strand, within MIT1002_03319 at 3705.618 kb on - strand, within MIT1002_03319 at 3705.627 kb on + strand, within MIT1002_03319 at 3705.653 kb on + strand, within MIT1002_03319 at 3705.661 kb on - strand, within MIT1002_03319 at 3705.680 kb on - strand, within MIT1002_03319 at 3705.738 kb on + strand, within MIT1002_03319 at 3705.833 kb on - strand, within MIT1002_03319 at 3705.833 kb on - strand, within MIT1002_03319 at 3705.833 kb on - strand, within MIT1002_03319 at 3705.836 kb on - strand, within MIT1002_03319 at 3705.838 kb on - strand, within MIT1002_03319 at 3705.856 kb on - strand, within MIT1002_03319 at 3705.858 kb on + strand, within MIT1002_03319 at 3705.858 kb on + strand, within MIT1002_03319 at 3705.878 kb on - strand, within MIT1002_03319 at 3705.878 kb on - strand, within MIT1002_03319 at 3705.991 kb on - strand, within MIT1002_03319 at 3706.031 kb on - strand, within MIT1002_03319 at 3706.031 kb on - strand, within MIT1002_03319 at 3706.088 kb on - strand, within MIT1002_03319 at 3706.088 kb on - strand, within MIT1002_03319 at 3706.094 kb on - strand, within MIT1002_03319 at 3706.102 kb on - strand, within MIT1002_03319 at 3706.143 kb on + strand, within MIT1002_03319 at 3706.158 kb on + strand at 3706.163 kb on + strand at 3706.171 kb on - strand at 3706.178 kb on + strand at 3706.178 kb on + strand at 3706.186 kb on - strand at 3706.186 kb on - strand at 3706.186 kb on - strand at 3706.188 kb on + strand at 3706.188 kb on + strand at 3706.196 kb on - strand at 3706.198 kb on + strand at 3706.218 kb on - strand at 3706.239 kb on - strand at 3706.250 kb on + strand at 3706.250 kb on + strand at 3706.311 kb on + strand at 3706.316 kb on + strand at 3706.316 kb on + strand at 3706.324 kb on - strand at 3706.339 kb on - strand at 3706.391 kb on - strand at 3706.391 kb on - strand at 3706.446 kb on + strand at 3706.502 kb on - strand, within MIT1002_03320 at 3706.509 kb on + strand, within MIT1002_03320 at 3706.573 kb on - strand, within MIT1002_03320 at 3706.583 kb on - strand, within MIT1002_03320 at 3706.608 kb on - strand, within MIT1002_03320 at 3706.608 kb on - strand, within MIT1002_03320 at 3706.608 kb on - strand, within MIT1002_03320 at 3706.655 kb on - strand, within MIT1002_03320 at 3706.655 kb on - strand, within MIT1002_03320 at 3706.684 kb on + strand, within MIT1002_03320 at 3706.786 kb on + strand, within MIT1002_03320 at 3706.796 kb on + strand, within MIT1002_03320 at 3706.804 kb on - strand, within MIT1002_03320 at 3706.804 kb on - strand, within MIT1002_03320 at 3706.825 kb on - strand, within MIT1002_03320 at 3706.903 kb on - strand, within MIT1002_03320 at 3706.905 kb on - strand, within MIT1002_03320 at 3707.033 kb on + strand, within MIT1002_03320 at 3707.046 kb on + strand, within MIT1002_03320 at 3707.054 kb on - strand, within MIT1002_03320 at 3707.108 kb on - strand, within MIT1002_03320 at 3707.119 kb on + strand, within MIT1002_03320 at 3707.127 kb on - strand, within MIT1002_03320 at 3707.154 kb on - strand, within MIT1002_03320 at 3707.203 kb on - strand, within MIT1002_03320 at 3707.221 kb on + strand, within MIT1002_03320
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6 remove 3,704,150 + MIT1002_03318 0.63 -0.7 3,704,177 + MIT1002_03318 0.64 +1.3 3,704,179 - MIT1002_03318 0.64 +0.3 3,704,203 + MIT1002_03318 0.65 -0.8 3,704,203 + MIT1002_03318 0.65 +0.9 3,704,211 - MIT1002_03318 0.65 -2.1 3,704,211 - MIT1002_03318 0.65 -1.4 3,704,211 - MIT1002_03318 0.65 -0.3 3,704,211 - MIT1002_03318 0.65 +0.6 3,704,213 - MIT1002_03318 0.65 -1.6 3,704,322 + MIT1002_03318 0.69 +0.9 3,704,347 + MIT1002_03318 0.70 -0.7 3,704,497 + MIT1002_03318 0.76 -1.3 3,704,522 - MIT1002_03318 0.77 -3.0 3,704,563 + MIT1002_03318 0.79 +0.6 3,704,563 + MIT1002_03318 0.79 -2.8 3,704,563 + MIT1002_03318 0.79 +0.3 3,704,718 + MIT1002_03318 0.85 -3.1 3,704,819 - MIT1002_03318 0.89 -0.8 3,704,861 - -0.4 3,704,886 - -2.4 3,704,886 - -1.2 3,704,886 - -2.6 3,704,943 - +0.4 3,704,959 - -1.0 3,704,967 - -0.1 3,704,967 - -2.1 3,705,053 - -1.9 3,705,091 + +0.9 3,705,163 + -1.4 3,705,164 + +0.7 3,705,171 - -2.4 3,705,433 + MIT1002_03319 0.30 +0.3 3,705,469 + MIT1002_03319 0.33 -1.5 3,705,469 + MIT1002_03319 0.33 +1.0 3,705,503 - MIT1002_03319 0.36 -3.5 3,705,513 - MIT1002_03319 0.37 +0.9 3,705,595 + MIT1002_03319 0.43 -1.4 3,705,618 - MIT1002_03319 0.45 -0.7 3,705,627 + MIT1002_03319 0.46 -2.0 3,705,653 + MIT1002_03319 0.48 -0.3 3,705,661 - MIT1002_03319 0.49 -2.5 3,705,680 - MIT1002_03319 0.51 -1.0 3,705,738 + MIT1002_03319 0.55 +1.1 3,705,833 - MIT1002_03319 0.63 -0.4 3,705,833 - MIT1002_03319 0.63 -1.4 3,705,833 - MIT1002_03319 0.63 +0.7 3,705,836 - MIT1002_03319 0.64 -1.1 3,705,838 - MIT1002_03319 0.64 +0.2 3,705,856 - MIT1002_03319 0.65 +1.6 3,705,858 + MIT1002_03319 0.65 +0.1 3,705,858 + MIT1002_03319 0.65 -2.6 3,705,878 - MIT1002_03319 0.67 +2.0 3,705,878 - MIT1002_03319 0.67 -0.9 3,705,991 - MIT1002_03319 0.77 -1.8 3,706,031 - MIT1002_03319 0.80 -3.0 3,706,031 - MIT1002_03319 0.80 +0.2 3,706,088 - MIT1002_03319 0.85 +1.6 3,706,088 - MIT1002_03319 0.85 -1.5 3,706,094 - MIT1002_03319 0.85 -0.8 3,706,102 - MIT1002_03319 0.86 -0.5 3,706,143 + MIT1002_03319 0.89 -0.3 3,706,158 + -0.7 3,706,163 + -0.8 3,706,171 - -0.3 3,706,178 + +0.4 3,706,178 + -0.6 3,706,186 - +0.6 3,706,186 - -3.4 3,706,186 - -1.4 3,706,188 + -0.7 3,706,188 + -0.1 3,706,196 - -2.4 3,706,198 + +0.2 3,706,218 - +0.9 3,706,239 - -0.9 3,706,250 + +1.2 3,706,250 + -0.2 3,706,311 + +1.0 3,706,316 + +0.1 3,706,316 + +0.0 3,706,324 - +0.1 3,706,339 - +1.6 3,706,391 - -3.1 3,706,391 - +1.2 3,706,446 + +1.2 3,706,502 - MIT1002_03320 0.13 +0.3 3,706,509 + MIT1002_03320 0.13 +0.3 3,706,573 - MIT1002_03320 0.16 +1.3 3,706,583 - MIT1002_03320 0.16 +1.1 3,706,608 - MIT1002_03320 0.18 +0.9 3,706,608 - MIT1002_03320 0.18 -0.3 3,706,608 - MIT1002_03320 0.18 +3.5 3,706,655 - MIT1002_03320 0.20 +1.3 3,706,655 - MIT1002_03320 0.20 +1.3 3,706,684 + MIT1002_03320 0.21 +1.7 3,706,786 + MIT1002_03320 0.26 +2.1 3,706,796 + MIT1002_03320 0.27 -0.3 3,706,804 - MIT1002_03320 0.27 -0.8 3,706,804 - MIT1002_03320 0.27 -0.0 3,706,825 - MIT1002_03320 0.28 +2.0 3,706,903 - MIT1002_03320 0.32 -1.0 3,706,905 - MIT1002_03320 0.32 +0.2 3,707,033 + MIT1002_03320 0.38 +1.3 3,707,046 + MIT1002_03320 0.39 +1.8 3,707,054 - MIT1002_03320 0.39 +0.2 3,707,108 - MIT1002_03320 0.42 +1.9 3,707,119 + MIT1002_03320 0.42 +2.1 3,707,127 - MIT1002_03320 0.42 +2.0 3,707,154 - MIT1002_03320 0.44 +1.5 3,707,203 - MIT1002_03320 0.46 -0.5 3,707,221 + MIT1002_03320 0.47 +0.5
Or see this region's nucleotide sequence