Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03252

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
3,622,211	-		MIT1002_03251	0.32	+1.3
3,622,371	-		MIT1002_03251	0.45	-0.3
3,622,383	-		MIT1002_03251	0.47	+1.0
3,622,424	-		MIT1002_03251	0.50	+0.5
3,622,424	-		MIT1002_03251	0.50	-0.5
3,622,523	+		MIT1002_03251	0.59	+0.2
3,622,531	-		MIT1002_03251	0.59	+1.9
3,622,548	+		MIT1002_03251	0.61	-0.2
3,622,637	-		MIT1002_03251	0.68	+0.1
3,622,646	+		MIT1002_03251	0.69	-0.9
3,622,646	+		MIT1002_03251	0.69	-1.3
3,622,654	-		MIT1002_03251	0.70	-0.8
3,622,678	-		MIT1002_03251	0.72	+1.2
3,622,688	-		MIT1002_03251	0.73	+0.6
3,622,716	-		MIT1002_03251	0.75	-0.5
3,622,729	+		MIT1002_03251	0.76	-2.4
3,622,756	+		MIT1002_03251	0.79	-1.7
3,622,786	-		MIT1002_03251	0.81	+0.1
3,622,811	+		MIT1002_03251	0.83	-1.4
3,622,844	+		MIT1002_03251	0.86	-0.0
3,622,844	+		MIT1002_03251	0.86	+0.1
3,622,889	+				-2.3
3,622,889	+				-0.8
3,622,986	-				-0.1
3,622,986	-				+0.7
3,623,011	+				+0.9
3,623,020	+				-0.9
3,623,038	+				-0.0
3,623,080	+				+0.6
3,623,128	+				-1.3
3,623,233	+				-1.7
3,623,238	+				+1.2
3,623,246	-				-1.3
3,623,366	+				-3.4
3,623,420	+		MIT1002_03252	0.10	-0.5
3,623,439	+		MIT1002_03252	0.11	-0.3
3,623,447	-		MIT1002_03252	0.12	-0.1
3,623,447	-		MIT1002_03252	0.12	+0.1
3,623,447	-		MIT1002_03252	0.12	+0.4
3,623,447	-		MIT1002_03252	0.12	+0.3
3,623,447	-		MIT1002_03252	0.12	-1.5
3,623,447	-		MIT1002_03252	0.12	+0.9
3,623,594	+		MIT1002_03252	0.18	-0.5
3,623,602	-		MIT1002_03252	0.19	-1.0
3,623,673	-		MIT1002_03252	0.22	+2.5
3,623,673	-		MIT1002_03252	0.22	-1.3
3,623,675	+		MIT1002_03252	0.22	-0.0
3,623,675	+		MIT1002_03252	0.22	-1.2
3,623,675	+		MIT1002_03252	0.22	-2.0
3,623,683	-		MIT1002_03252	0.22	+1.3
3,623,683	-		MIT1002_03252	0.22	-0.2
3,623,683	-		MIT1002_03252	0.22	-0.4
3,623,719	+		MIT1002_03252	0.24	-1.9
3,623,743	+		MIT1002_03252	0.25	-0.0
3,623,753	+		MIT1002_03252	0.26	-2.5
3,623,753	+		MIT1002_03252	0.26	-2.3
3,623,790	-		MIT1002_03252	0.27	+0.8
3,623,795	-		MIT1002_03252	0.28	-0.4
3,623,808	-		MIT1002_03252	0.28	-2.2
3,623,969	+		MIT1002_03252	0.36	+0.1
3,623,984	-		MIT1002_03252	0.36	-0.5
3,624,004	-		MIT1002_03252	0.37	-0.1
3,624,007	+		MIT1002_03252	0.37	+0.1
3,624,060	+		MIT1002_03252	0.40	-2.6
3,624,066	+		MIT1002_03252	0.40	-0.6
3,624,068	-		MIT1002_03252	0.40	-1.2
3,624,099	+		MIT1002_03252	0.42	-2.4
3,624,179	-		MIT1002_03252	0.45	+0.1
3,624,188	+		MIT1002_03252	0.46	-1.5
3,624,265	+		MIT1002_03252	0.49	-0.3
3,624,265	+		MIT1002_03252	0.49	-0.7
3,624,273	-		MIT1002_03252	0.50	+2.1
3,624,273	-		MIT1002_03252	0.50	-2.7
3,624,273	-		MIT1002_03252	0.50	-0.3
3,624,302	+		MIT1002_03252	0.51	+1.6
3,624,302	+		MIT1002_03252	0.51	+0.8
3,624,545	+		MIT1002_03252	0.62	+1.5
3,624,553	-		MIT1002_03252	0.63	+0.5
3,624,559	+		MIT1002_03252	0.63	-0.1
3,624,581	+		MIT1002_03252	0.64	+1.1
3,624,589	-		MIT1002_03252	0.64	-0.7
3,624,589	-		MIT1002_03252	0.64	-2.7
3,624,589	-		MIT1002_03252	0.64	+1.3
3,624,598	+		MIT1002_03252	0.65	-1.2
3,624,621	-		MIT1002_03252	0.66	-0.9
3,624,625	+		MIT1002_03252	0.66	-0.3
3,624,640	+		MIT1002_03252	0.67	+0.3
3,624,662	+		MIT1002_03252	0.68	-2.9
3,624,766	+		MIT1002_03252	0.72	+0.7
3,624,768	-		MIT1002_03252	0.72	-1.7
3,624,777	+		MIT1002_03252	0.73	+0.6
3,624,782	-		MIT1002_03252	0.73	-1.1
3,624,785	-		MIT1002_03252	0.73	-0.1
3,624,785	-		MIT1002_03252	0.73	-1.6
3,624,820	+		MIT1002_03252	0.75	-1.4
3,624,852	-		MIT1002_03252	0.76	+0.1
3,624,854	+		MIT1002_03252	0.76	+1.2
3,624,862	-		MIT1002_03252	0.77	+1.6
3,624,907	-		MIT1002_03252	0.79	-1.1
3,624,920	+		MIT1002_03252	0.79	-1.1
3,624,926	+		MIT1002_03252	0.80	-1.3
3,624,934	+		MIT1002_03252	0.80	+0.3
3,625,006	+		MIT1002_03252	0.83	+0.2
3,625,084	+		MIT1002_03252	0.87	+0.9
3,625,094	+		MIT1002_03252	0.87	-0.4
3,625,102	-		MIT1002_03252	0.88	-0.4
3,625,125	-		MIT1002_03252	0.89	+0.3
3,625,138	-		MIT1002_03252	0.89	+0.2
3,625,150	+				+0.7
3,625,229	+				-0.9
3,625,246	+				-0.8
3,625,246	+				-0.9
3,625,334	+				-1.9
3,625,342	-				-1.0
3,625,479	-		MIT1002_03253	0.18	-1.5
3,625,515	-		MIT1002_03253	0.25	-0.5
3,625,519	+		MIT1002_03253	0.25	+0.9
3,625,519	+		MIT1002_03253	0.25	-0.3
3,625,535	-		MIT1002_03253	0.28	+1.2
3,625,539	+		MIT1002_03253	0.29	+0.8
3,625,560	-		MIT1002_03253	0.33	-0.1
3,625,575	-		MIT1002_03253	0.35	+1.6
3,625,588	-		MIT1002_03253	0.38	+0.8
3,625,594	-		MIT1002_03253	0.39	+0.6
3,625,646	-		MIT1002_03253	0.48	+0.1
3,625,651	+		MIT1002_03253	0.49	-0.6
3,625,651	+		MIT1002_03253	0.49	-0.3
3,625,683	-		MIT1002_03253	0.55	+0.7
3,625,704	+		MIT1002_03253	0.59	+0.8
3,625,714	-		MIT1002_03253	0.60	-0.5
3,625,762	+		MIT1002_03253	0.69	-0.4
3,625,762	+		MIT1002_03253	0.69	-0.9
3,625,884	-				+1.1
3,625,895	+				-1.0
3,625,898	-				-0.9
3,625,996	+				-0.7
3,626,073	-				-0.1
3,626,073	-				+0.4
3,626,085	-		MIT1002_03254	0.10	+1.4
3,626,160	+		MIT1002_03254	0.16	+0.9
3,626,170	-		MIT1002_03254	0.16	-0.7
3,626,170	-		MIT1002_03254	0.16	-1.6
3,626,220	+		MIT1002_03254	0.20	+1.0
3,626,228	-		MIT1002_03254	0.20	-2.4
3,626,228	-		MIT1002_03254	0.20	-2.0
3,626,228	-		MIT1002_03254	0.20	-0.6
3,626,228	-		MIT1002_03254	0.20	+1.2
3,626,228	-		MIT1002_03254	0.20	+3.0
3,626,228	-		MIT1002_03254	0.20	+0.2
3,626,228	-		MIT1002_03254	0.20	+0.0
3,626,228	-		MIT1002_03254	0.20	+0.7
3,626,228	-		MIT1002_03254	0.20	+1.1
3,626,232	-		MIT1002_03254	0.21	-0.4
3,626,264	+		MIT1002_03254	0.23	+1.9
3,626,316	-		MIT1002_03254	0.26	-1.0
3,626,316	-		MIT1002_03254	0.26	-0.4