Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03179

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
3,542,239	+				-1.8
3,542,247	-				+0.9
3,542,334	+				-3.3
3,542,335	+				-2.7
3,542,335	+				-2.8
3,542,335	+				-1.0
3,542,343	-				-2.9
3,542,357	-		MIT1002_03179	0.11	-1.6
3,542,362	-		MIT1002_03179	0.11	-2.3
3,542,367	-		MIT1002_03179	0.11	-2.0
3,542,448	+		MIT1002_03179	0.18	-3.7
3,542,464	-		MIT1002_03179	0.20	-3.3
3,542,551	+		MIT1002_03179	0.27	-0.7
3,542,551	+		MIT1002_03179	0.27	-2.5
3,542,551	+		MIT1002_03179	0.27	-1.7
3,542,559	-		MIT1002_03179	0.28	-4.0
3,542,559	-		MIT1002_03179	0.28	-3.5
3,542,559	-		MIT1002_03179	0.28	-1.6
3,542,684	-		MIT1002_03179	0.38	-2.1
3,542,702	+		MIT1002_03179	0.40	-3.6
3,542,703	+		MIT1002_03179	0.40	-4.0
3,542,703	+		MIT1002_03179	0.40	-3.3
3,542,781	+		MIT1002_03179	0.47	-4.0
3,542,782	-		MIT1002_03179	0.47	+0.6
3,542,861	+		MIT1002_03179	0.53	-2.9
3,542,869	-		MIT1002_03179	0.54	-1.0
3,542,935	-		MIT1002_03179	0.60	-1.9
3,542,993	+		MIT1002_03179	0.65	-3.2
3,543,097	+		MIT1002_03179	0.73	-2.4
3,543,118	-		MIT1002_03179	0.75	-2.8
3,543,118	-		MIT1002_03179	0.75	-4.0
3,543,118	-		MIT1002_03179	0.75	-3.6
3,543,155	+		MIT1002_03179	0.78	-4.5
3,543,190	+		MIT1002_03179	0.81	-2.4
3,543,190	+		MIT1002_03179	0.81	-0.4
3,543,190	+		MIT1002_03179	0.81	+0.3
3,543,231	+		MIT1002_03179	0.85	-0.7
3,543,241	-		MIT1002_03179	0.86	-3.7
3,543,241	-		MIT1002_03179	0.86	-2.4
3,543,241	-		MIT1002_03179	0.86	-4.0
3,543,260	-		MIT1002_03179	0.87	-3.2
3,543,260	-		MIT1002_03179	0.87	-3.4
3,543,301	-				-2.5
3,543,384	+				-2.0
3,543,408	+				-2.0
3,543,545	-				-3.5
3,543,571	-				+0.7
3,543,628	+				+1.4
3,543,628	-				-2.6
3,543,630	+				+0.4
3,543,630	+				+0.9
3,543,630	+				-0.1
3,543,638	-				+0.6
3,543,638	-				-3.3
3,543,638	-				+0.3
3,543,638	-				-0.8
3,543,638	-				-0.9
3,543,663	+				-1.4
3,543,752	+		MIT1002_03180	0.21	-2.1
3,543,784	+		MIT1002_03180	0.30	+0.1
3,543,950	+		MIT1002_03180	0.74	+0.3
3,543,978	-		MIT1002_03180	0.81	+0.9
3,544,004	+		MIT1002_03180	0.88	-0.3
3,544,032	-				-1.3
3,544,032	-				-0.2
3,544,128	+				-0.1
3,544,220	+				+2.5
3,544,289	+				-0.4
3,544,299	+				+0.1
3,544,339	-				+0.7