Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03062

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_03060 and MIT1002_03061 are separated by 27 nucleotidesMIT1002_03061 and MIT1002_03062 are separated by 70 nucleotidesMIT1002_03062 and MIT1002_03063 are separated by 20 nucleotidesMIT1002_03063 and MIT1002_03064 are separated by 120 nucleotides MIT1002_03060: MIT1002_03060 - Twitching mobility protein, at 3,413,915 to 3,414,958 _03060 MIT1002_03061: MIT1002_03061 - pyridoxal phosphate enzyme, YggS family, at 3,414,986 to 3,415,672 _03061 MIT1002_03062: MIT1002_03062 - Pyrroline-5-carboxylate reductase, at 3,415,743 to 3,416,564 _03062 MIT1002_03063: MIT1002_03063 - YGGT family protein, at 3,416,585 to 3,417,121 _03063 MIT1002_03064: MIT1002_03064 - hypothetical protein, at 3,417,242 to 3,417,691 _03064 Position (kb) 3415 3416 3417Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3414.809 kb on - strand, within MIT1002_03060at 3414.902 kb on + strandat 3414.902 kb on + strandat 3414.910 kb on - strandat 3414.910 kb on - strandat 3414.923 kb on - strandat 3414.999 kb on - strandat 3415.033 kb on - strandat 3415.114 kb on + strand, within MIT1002_03061at 3415.253 kb on + strand, within MIT1002_03061at 3415.363 kb on + strand, within MIT1002_03061at 3415.376 kb on + strand, within MIT1002_03061at 3415.390 kb on + strand, within MIT1002_03061at 3415.392 kb on - strand, within MIT1002_03061at 3415.447 kb on + strand, within MIT1002_03061at 3415.464 kb on + strand, within MIT1002_03061at 3415.466 kb on - strand, within MIT1002_03061at 3415.477 kb on + strand, within MIT1002_03061at 3415.483 kb on + strand, within MIT1002_03061at 3415.499 kb on + strand, within MIT1002_03061at 3415.507 kb on + strand, within MIT1002_03061at 3415.509 kb on + strand, within MIT1002_03061at 3415.527 kb on - strand, within MIT1002_03061at 3415.527 kb on - strand, within MIT1002_03061at 3415.621 kb on - strandat 3415.621 kb on - strandat 3415.626 kb on + strandat 3415.639 kb on + strandat 3415.670 kb on - strandat 3415.687 kb on + strandat 3415.712 kb on + strandat 3415.783 kb on - strandat 3415.816 kb on - strandat 3416.040 kb on + strand, within MIT1002_03062at 3416.048 kb on - strand, within MIT1002_03062at 3416.201 kb on - strand, within MIT1002_03062at 3416.201 kb on - strand, within MIT1002_03062at 3416.250 kb on + strand, within MIT1002_03062at 3416.258 kb on - strand, within MIT1002_03062at 3416.316 kb on + strand, within MIT1002_03062at 3416.324 kb on - strand, within MIT1002_03062at 3416.357 kb on + strand, within MIT1002_03062at 3416.401 kb on + strand, within MIT1002_03062at 3416.546 kb on - strandat 3416.726 kb on - strand, within MIT1002_03063at 3416.750 kb on - strand, within MIT1002_03063at 3416.790 kb on + strand, within MIT1002_03063at 3416.827 kb on - strand, within MIT1002_03063at 3416.827 kb on - strand, within MIT1002_03063at 3416.833 kb on - strand, within MIT1002_03063at 3416.843 kb on + strand, within MIT1002_03063at 3416.843 kb on + strand, within MIT1002_03063at 3416.851 kb on - strand, within MIT1002_03063at 3416.851 kb on - strand, within MIT1002_03063at 3416.919 kb on - strand, within MIT1002_03063at 3416.919 kb on - strand, within MIT1002_03063at 3416.936 kb on + strand, within MIT1002_03063at 3416.936 kb on + strand, within MIT1002_03063at 3416.936 kb on + strand, within MIT1002_03063at 3416.936 kb on + strand, within MIT1002_03063at 3416.936 kb on + strand, within MIT1002_03063at 3416.936 kb on + strand, within MIT1002_03063at 3417.041 kb on + strand, within MIT1002_03063at 3417.139 kb on - strandat 3417.141 kb on + strandat 3417.239 kb on + strandat 3417.252 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
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3,414,809 - MIT1002_03060 0.86 +1.1
3,414,902 + +1.7
3,414,902 + -0.1
3,414,910 - +0.6
3,414,910 - +1.4
3,414,923 - -0.4
3,414,999 - -1.7
3,415,033 - +0.3
3,415,114 + MIT1002_03061 0.19 -0.7
3,415,253 + MIT1002_03061 0.39 -0.2
3,415,363 + MIT1002_03061 0.55 -0.3
3,415,376 + MIT1002_03061 0.57 -0.4
3,415,390 + MIT1002_03061 0.59 -3.5
3,415,392 - MIT1002_03061 0.59 +1.3
3,415,447 + MIT1002_03061 0.67 +0.2
3,415,464 + MIT1002_03061 0.70 +0.9
3,415,466 - MIT1002_03061 0.70 -1.7
3,415,477 + MIT1002_03061 0.71 -0.7
3,415,483 + MIT1002_03061 0.72 -1.1
3,415,499 + MIT1002_03061 0.75 +1.4
3,415,507 + MIT1002_03061 0.76 -0.8
3,415,509 + MIT1002_03061 0.76 -3.1
3,415,527 - MIT1002_03061 0.79 -0.1
3,415,527 - MIT1002_03061 0.79 +0.3
3,415,621 - -1.2
3,415,621 - +0.6
3,415,626 + +0.1
3,415,639 + -0.2
3,415,670 - -2.3
3,415,687 + +1.0
3,415,712 + -0.6
3,415,783 - -4.2
3,415,816 - -3.7
3,416,040 + MIT1002_03062 0.36 -2.4
3,416,048 - MIT1002_03062 0.37 -3.5
3,416,201 - MIT1002_03062 0.56 -3.4
3,416,201 - MIT1002_03062 0.56 -1.6
3,416,250 + MIT1002_03062 0.62 -0.8
3,416,258 - MIT1002_03062 0.63 -1.1
3,416,316 + MIT1002_03062 0.70 -2.8
3,416,324 - MIT1002_03062 0.71 -1.0
3,416,357 + MIT1002_03062 0.75 -1.8
3,416,401 + MIT1002_03062 0.80 -2.3
3,416,546 - -3.0
3,416,726 - MIT1002_03063 0.26 -1.9
3,416,750 - MIT1002_03063 0.31 -2.5
3,416,790 + MIT1002_03063 0.38 +1.1
3,416,827 - MIT1002_03063 0.45 -0.9
3,416,827 - MIT1002_03063 0.45 -2.9
3,416,833 - MIT1002_03063 0.46 +0.7
3,416,843 + MIT1002_03063 0.48 +0.4
3,416,843 + MIT1002_03063 0.48 -0.8
3,416,851 - MIT1002_03063 0.50 +3.2
3,416,851 - MIT1002_03063 0.50 -1.2
3,416,919 - MIT1002_03063 0.62 -0.7
3,416,919 - MIT1002_03063 0.62 -1.2
3,416,936 + MIT1002_03063 0.65 -1.9
3,416,936 + MIT1002_03063 0.65 +0.3
3,416,936 + MIT1002_03063 0.65 +1.3
3,416,936 + MIT1002_03063 0.65 -1.2
3,416,936 + MIT1002_03063 0.65 -0.3
3,416,936 + MIT1002_03063 0.65 -1.3
3,417,041 + MIT1002_03063 0.85 +0.1
3,417,139 - +3.1
3,417,141 + +0.1
3,417,239 + -0.9
3,417,252 - +0.6

Or see this region's nucleotide sequence